Rroxscaffold_1G00062770

phospho-N-acetylmuramoyl-pentapeptide- transferase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008615
Physical Location & Seq
Forward (+)
84793315 .. 84797304
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062770.1

Sequence Viewer

Length: 1380 bp
ATGGCATCTTACTCCTCGATCTTCGCCACCTCTACCCTCTCCAGCTCCCTCGCCCCCACCGCCGCTCCTCATTTCGCGCCGTCGATCGCCTCCGATCCGGTTCCGGCTTCTCGCCGGTACGTTCCGGAATCAGTTACGATCTTAAGGTTTTTGATTGGGTTGCGAGGAGGTGGATGCCGCTTTGGTCATGGTCGTGTTCGTTATGGAGCCTTTGATGTGGATTTTGGTGATGTTTCGCCGGTTGAGGATTGGGGTAGTAACCAGGAAGAGACTGCAGAACACGTGAGTTTTTCCAGCGATGGTGATGATAGTGATGCCGAGTTTGTAGTGTCTCCTCAGTCTGATATTGATTTGCCTGCTATTACCAAACAAACTGACGATGCTCTAACTGTGAGTACTTATCGGCTTGCGATGCTTGGGCATAAGCGCAAGAAACACAGGCAAGATCAGGCAAGGAGTATTACTCAACACGGGACTGATAATGTTCTTGGTAGTGGTACTTCTATATGTGGATTGCTTGAAGATTCATCAAATTATCAGAAAAGAAGGTCCTGTAAGGCACTCTTTGAAAAAAGAACTCCCACAATGGGTGGACTGTTCTTTGTACCAGTTGGTGTCATTGTCGCAAGGTTCACTGCTGGGTTTTCTTCTGTTGAAGTATGTGGAGCAGCTACAGCAACTCTTGCATTTGCTGCTATTGGACTACTTGATGATATCATATGCTTGATAAAGAATCATAATAGTGGTCTATCTGCATGGATAAAAATTATTTTGGAGGTAGCTGTTGGAACCTGGAAAATGTTGGTTCCTCTACCTGCTCCACTAGGCATTGTGTGGCTGGGAAAACTATATTTAGTGCTGGCTTCATTCTGTTTTGTTTCTATGGGAAATGGGGTGAACTTAACAGATGGTCTTGATGGGCTGGCTGGAGGATCTGCTGCATTGGCTTTTATAGGAATGTCGATCGCAGTGCTTCCAATATGTTCAGACCTTGCGATATTTGGAGCGTCGATGGCAGGAGCTTGTGTTGGTTTTCTTTTGCACAACCGATATAAGGCATCAGTGTTCATGGGTGATACTGGATCCTTGGCAATTGGTGGAGGGTTAGCTGCAATGGCTTGTTGCACGGGGATGTTCTTCCCATTGTTCATTTCATCTGGCATCTTTGTCTTGGAAGCCTCATCAGTTATTTTGCAGGTTATGTACTTCAAGACAACCAAACGCTTGCAAGGTGCGGGTCGTCGGCTCTTCCGAATGGCACCCTTTCATCATCACCTTGAACTATGTGGACTTAAAGAACCAATCATTGTTGGTGGTGCCTATATAATATCGTCCACGTTATCGTTAATTGCTGCCTATGTCGGTCTGATATCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 map00550 map01100 map01502
Pfam Domains
Protein Families
Glycos_transf_4 MraY_sig1

Protein Analysis

459

Amino Acids

48.52

Weight (kDa)

7.14

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_4 PF00953 223 - 374 3.5e-24 Glycosyl transferase family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 823, 1186
AccB1I GGYRCC 2 cut(s) 1258, 1316
AccBSI CCGCTC 1 cut(s) 65
AccII CGCG 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 4 cut(s) 60, 63, 178, 1235
AclWI GGATC 4 cut(s) 89, 940, 1077, 1090
AcvI CACGTG 1 cut(s) 283
AfaI GTAC 5 cut(s) 119, 397, 499, 606, 1205
AfiI CCNNNNNNNGG 2 cut(s) 587, 1054
AflII CTTAAG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 521, 569, 656, 1210, 1280
AjnI CCWGG 2 cut(s) 261, 791
AluBI AGCT 5 cut(s) 45, 671, 782, 1022, 1109
AluI AGCT 5 cut(s) 45, 671, 782, 1022, 1109
Alw26I GTCTC 2 cut(s) 263, 336
AlwI GGATC 4 cut(s) 89, 940, 1077, 1090
Aor13HI TCCGGA 1 cut(s) 124
ApeKI GCWGC 5 cut(s) 668, 692, 938, 1109, 1352
AspLEI GCGC 2 cut(s) 79, 429
AspS9I GGNCC 1 cut(s) 549
AsuHPI GGTGA 5 cut(s) 239, 314, 907, 1085, 1265
AvaII GGWCC 1 cut(s) 549
BamHI GGATCC 1 cut(s) 1082
BanI GGYRCC 2 cut(s) 1258, 1316
BarI GAAGNNNNNNTAC 2 cut(s) 484, 516
BbrPI CACGTG 1 cut(s) 283
BbvI GCAGC 5 cut(s) 679, 680, 925, 1096, 1339
BccI CCATC 4 cut(s) 293, 902, 911, 1006
BceAI ACGGC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 952, 986
BciT130I CCWGG 2 cut(s) 263, 793
BcoDI GTCTC 2 cut(s) 263, 336
BfaI CTAG 1 cut(s) 824
BfmI CTRYAG 2 cut(s) 273, 672
BfrI CTTAAG 1 cut(s) 142
BfuAI ACCTGC 2 cut(s) 823, 1186
BisI GCNGC 7 cut(s) 63, 178, 669, 693, 939, 1110, 1353
BlsI GCNGC 7 cut(s) 64, 179, 670, 694, 940, 1111, 1354
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 2 cut(s) 263, 793
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 7 cut(s) 102, 208, 790, 807, 1084, 1260, 1318
BmrFI CCNGG 2 cut(s) 263, 793
BmsI GCATC 7 cut(s) 14, 164, 304, 370, 402, 1067, 1170
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 2 cut(s) 25, 948
BsaAI YACGTR 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 2 cut(s) 97, 124
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 1011, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 1054
Bse118I RCCGGY 2 cut(s) 114, 238
Bse1I ACTGG 2 cut(s) 608, 1084
Bse3DI GCAATG 1 cut(s) 1119
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 2 cut(s) 263, 793
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 2 cut(s) 179, 1137
BseLI CCNNNNNNNGG 2 cut(s) 587, 1054
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 2 cut(s) 608, 1084
BseRI GAGGAG 4 cut(s) 4, 57, 180, 324
BseXI GCAGC 5 cut(s) 679, 680, 925, 1096, 1339
BseYI CCCAGC 2 cut(s) 638, 838
Bsh1236I CGCG 1 cut(s) 77
Bsh1285I CGRYCG 2 cut(s) 87, 966
BshNI GGYRCC 2 cut(s) 1258, 1316
BsiEI CGRYCG 2 cut(s) 87, 966
BsiSI CCGG 5 cut(s) 98, 104, 115, 125, 239
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 587, 1054
BsmAI GTCTC 2 cut(s) 263, 336
BsmFI GGGAC 1 cut(s) 487
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
BspACI CCGC 4 cut(s) 60, 63, 178, 1235
BspCNI CTCAG 1 cut(s) 349
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 7 cut(s) 102, 208, 790, 807, 1084, 1260, 1318
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 2 cut(s) 823, 1186
BspPI GGATC 4 cut(s) 89, 940, 1077, 1090
BspQI GCTCTTC 1 cut(s) 1253
BspT107I GGYRCC 2 cut(s) 1258, 1316
BspTI CTTAAG 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 1119
BsrFI RCCGGY 2 cut(s) 114, 238
BsrI ACTGG 2 cut(s) 608, 1084
BssAI RCCGGY 2 cut(s) 114, 238
BssECI CCNNGG 1 cut(s) 1086
BssMI GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
BssT1I CCWWGG 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 263, 793
Bst4CI ACNGT 2 cut(s) 391, 597
Bst6I CTCTTC 2 cut(s) 261, 1253
BstAFI CTTAAG 1 cut(s) 142
BstAPI GCANNNNNTGC 2 cut(s) 683, 692
BstBAI YACGTR 1 cut(s) 283
BstC8I GCNNGC 5 cut(s) 357, 408, 861, 924, 1226
BstDEI CTNAG 2 cut(s) 336, 1377
BstF5I GGATG 2 cut(s) 179, 1137
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 429
BstKTI GATC 8 cut(s) 21, 87, 97, 141, 448, 935, 966, 1085
BstMAI GTCTC 2 cut(s) 263, 336
BstMBI GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
BstMCI CGRYCG 2 cut(s) 87, 966
BstMWI GCNNNNNNNGC 8 cut(s) 59, 412, 674, 683, 692, 944, 1013, 1115
BstNI CCWGG 2 cut(s) 263, 793
BstSCI CCNGG 2 cut(s) 261, 791
BstSFI CTRYAG 2 cut(s) 273, 672
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 5 cut(s) 679, 680, 925, 1096, 1339
BstX2I RGATCY 2 cut(s) 932, 1082
BstYI RGATCY 2 cut(s) 932, 1082
BtgZI GCGATG 2 cut(s) 312, 425
BtsCI GGATG 2 cut(s) 179, 1137
BtsI GCAGTG 2 cut(s) 633, 975
BtsIMutI CAGTG 3 cut(s) 633, 975, 1068
BveI ACCTGC 2 cut(s) 823, 1186
Cac8I GCNNGC 5 cut(s) 357, 408, 861, 924, 1226
CfoI GCGC 2 cut(s) 79, 429
Cfr10I RCCGGY 2 cut(s) 114, 238
Cfr13I GGNCC 1 cut(s) 549
CseI GACGC 1 cut(s) 996
Csp6I GTAC 5 cut(s) 118, 396, 498, 605, 1204
CviAII CATG 3 cut(s) 188, 756, 1069
CviQI GTAC 5 cut(s) 118, 396, 498, 605, 1204
DdeI CTNAG 2 cut(s) 336, 1377
DpnI GATC 8 cut(s) 20, 86, 96, 140, 447, 934, 965, 1084
DpnII GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
Eam1104I CTCTTC 2 cut(s) 261, 1253
EarI CTCTTC 2 cut(s) 261, 1253
Eco130I CCWWGG 1 cut(s) 1086
Eco32I GATATC 2 cut(s) 715, 1371
Eco47I GGWCC 1 cut(s) 549
Eco72I CACGTG 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 261, 791
EcoRV GATATC 2 cut(s) 715, 1371
EcoT14I CCWWGG 1 cut(s) 1086
ErhI CCWWGG 1 cut(s) 1086
FaeI CATG 3 cut(s) 191, 759, 1072
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 487
FatI CATG 3 cut(s) 187, 755, 1068
FauI CCCGC 1 cut(s) 1228
FauNDI CATATG 1 cut(s) 719
Fnu4HI GCNGC 7 cut(s) 63, 178, 669, 693, 939, 1110, 1353
FokI GGATG 2 cut(s) 186, 1144
Fsp4HI GCNGC 7 cut(s) 63, 178, 669, 693, 939, 1110, 1353
FspBI CTAG 1 cut(s) 824
GlaI GCGC 2 cut(s) 78, 428
GluI GCNGC 7 cut(s) 63, 178, 669, 693, 939, 1110, 1353
GsaI CCCAGC 2 cut(s) 642, 842
GsuI CTGGAG 2 cut(s) 25, 948
HapII CCGG 5 cut(s) 98, 104, 115, 125, 239
HgaI GACGC 1 cut(s) 996
HhaI GCGC 2 cut(s) 79, 429
Hin1II CATG 3 cut(s) 191, 759, 1072
Hin6I GCGC 2 cut(s) 77, 427
HinP1I GCGC 2 cut(s) 77, 427
HinfI GANTC 3 cut(s) 128, 524, 733
HpaII CCGG 5 cut(s) 98, 104, 115, 125, 239
HphI GGTGA 5 cut(s) 239, 314, 907, 1085, 1265
Hpy166II GTNNAC 5 cut(s) 593, 633, 898, 1289, 1335
Hpy188I TCNGA 6 cut(s) 94, 343, 540, 988, 1253, 1368
Hpy188III TCNNGA 3 cut(s) 125, 914, 1210
Hpy8I GTNNAC 5 cut(s) 593, 633, 898, 1289, 1335
Hpy99I CGWCG 3 cut(s) 85, 1012, 1245
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 2 cut(s) 391, 597
HpyCH4IV ACGT 3 cut(s) 120, 282, 1337
HpyCH4V TGCA 9 cut(s) 275, 686, 755, 941, 1042, 1112, 1125, 1195, 1228
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 412, 674, 683, 692, 944, 1013, 1115
HpyF3I CTNAG 2 cut(s) 336, 1377
HpySE526I ACGT 3 cut(s) 120, 282, 1337
Hsp92II CATG 3 cut(s) 191, 759, 1072
HspAI GCGC 2 cut(s) 77, 427
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
LguI GCTCTTC 1 cut(s) 1253
LmnI GCTCC 7 cut(s) 50, 70, 206, 665, 823, 1004, 1019
Lsp1109I GCAGC 5 cut(s) 679, 680, 925, 1096, 1339
LweI GCATC 7 cut(s) 14, 164, 304, 370, 402, 1067, 1170
MaeI CTAG 1 cut(s) 824
MaeII ACGT 3 cut(s) 120, 282, 1337
MaeIII GTNAC 2 cut(s) 133, 257
MalI GATC 8 cut(s) 20, 86, 96, 140, 447, 934, 965, 1084
MbiI CCGCTC 1 cut(s) 65
MboI GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
MboII GAAGA 6 cut(s) 13, 278, 533, 639, 1129, 1240
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 932, 1082
MluCI AATT 4 cut(s) 532, 765, 1092, 1347
MmeI TCCRAC 1 cut(s) 766
MroI TCCGGA 1 cut(s) 124
MseI TTAA 4 cut(s) 143, 902, 1293, 1346
MslI CAYNNNNRTG 3 cut(s) 192, 741, 1130
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 5 cut(s) 98, 104, 115, 125, 239
MspR9I CCNGG 2 cut(s) 263, 793
MunI CAATTG 1 cut(s) 1092
MvaI CCWGG 2 cut(s) 263, 793
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 8 cut(s) 59, 412, 674, 683, 692, 944, 1013, 1115
NdeI CATATG 1 cut(s) 719
NdeII GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
NlaIII CATG 3 cut(s) 191, 759, 1072
NlaIV GGNNCC 7 cut(s) 102, 208, 790, 807, 1084, 1260, 1318
NmeAIII GCCGAG 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 1249
PfeI GAWTC 3 cut(s) 128, 524, 733
PkrI GCNGC 7 cut(s) 64, 179, 670, 694, 940, 1111, 1354
Ple19I CGATCG 2 cut(s) 87, 966
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 261, 791
PspCI CACGTG 1 cut(s) 283
PspFI CCCAGC 2 cut(s) 638, 838
PspGI CCWGG 2 cut(s) 261, 791
PspN4I GGNNCC 7 cut(s) 102, 208, 790, 807, 1084, 1260, 1318
PspPI GGNCC 1 cut(s) 549
PspPPI RGGWCCY 1 cut(s) 549
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 2 cut(s) 932, 1082
PvuI CGATCG 2 cut(s) 87, 966
RsaI GTAC 5 cut(s) 119, 397, 499, 606, 1205
RsaNI GTAC 5 cut(s) 118, 396, 498, 605, 1204
RseI CAYNNNNRTG 3 cut(s) 192, 741, 1130
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 4 cut(s) 143, 902, 1293, 1346
SatI GCNGC 7 cut(s) 63, 178, 669, 693, 939, 1110, 1353
Sau3AI GATC 8 cut(s) 18, 84, 94, 138, 445, 932, 963, 1082
Sau96I GGNCC 1 cut(s) 549
ScaI AGTACT 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 263, 793
SfaNI GCATC 7 cut(s) 14, 164, 304, 370, 402, 1067, 1170
SfcI CTRYAG 2 cut(s) 273, 672
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 3 cut(s) 192, 741, 1130
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 4 cut(s) 532, 765, 1092, 1347
SsiI CCGC 4 cut(s) 60, 63, 178, 1235
SspMI CTAG 1 cut(s) 824
StyD4I CCNGG 2 cut(s) 261, 791
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 2 cut(s) 391, 597
TaiI ACGT 3 cut(s) 123, 285, 1340
TaqI TCGA 4 cut(s) 17, 83, 962, 1010
TaqII GACCGA 1 cut(s) 1352
TasI AATT 4 cut(s) 532, 765, 1092, 1347
TatI WGTACW 2 cut(s) 395, 1203
TauI GCSGC 2 cut(s) 65, 180
TfiI GAWTC 3 cut(s) 128, 524, 733
Tru1I TTAA 4 cut(s) 143, 902, 1293, 1346
Tru9I TTAA 4 cut(s) 143, 902, 1293, 1346
TscAI CASTG 3 cut(s) 640, 975, 1068
TseI GCWGC 5 cut(s) 668, 692, 938, 1109, 1352
TspDTI ATGAA 6 cut(s) 516, 855, 1057, 1138, 1143, 1256
TspRI CASTG 3 cut(s) 640, 975, 1068
Vha464I CTTAAG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 549
XspI CTAG 1 cut(s) 824
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.