AT4G18750

DYW family of nucleic acid deaminases

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
10304662 .. 10307673
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18750.1

Sequence Viewer

Length: 2616 bp
ATGGCGATGTTGGTGACGAATTTATCTTCTTCAAGCTTCTGTTTTTTTTCCTCTCCTCATTTACAAAACCAGAAGGAGATCAGAAGCGGCGTTAGAGTTCGAAAATATGTGATTTTCAATAGAGCCTCGTTGAGAACAGTATCAGATTGTGTTGATTCGATTACAACTTTTGATCGAAGCGTAACAGATGCGAACACTCAATTACGGAGATTCTGCGAATCAGGGAATCTAGAGAACGCCGTGAAACTTCTTTGCGTATCTGGAAAATGGGATATTGATCCGAGAACTTTATGCTCTGTTCTTCAGCTCTGTGCTGATTCGAAATCTCTCAAAGATGGTAAAGAAGTTGATAACTTTATTCGTGGTAATGGGTTTGTGATAGATTCGAATTTGGGATCAAAACTCTCTCTTATGTATACAAATTGTGGAGATTTGAAAGAAGCAAGTAGAGTGTTCGATGAGGTTAAGATCGAGAAAGCATTGTTCTGGAATATTTTGATGAATGAGCTTGCAAAATCTGGTGACTTTAGTGGGAGTATTGGATTGTTTAAGAAGATGATGAGTTCTGGTGTTGAAATGGATAGCTATACTTTTTCTTGTGTTTCAAAGAGTTTTTCGTCTTTACGAAGTGTTCATGGAGGAGAGCAGCTTCATGGATTTATTCTTAAATCAGGTTTTGGAGAAAGGAACTCTGTGGGGAATTCTTTGGTTGCATTTTATTTGAAGAATCAGAGAGTTGATAGTGCACGTAAGGTGTTTGATGAAATGACTGAGAGAGATGTTATATCTTGGAATTCTATTATTAATGGGTATGTATCAAACGGATTAGCTGAGAAAGGGCTATCTGTTTTCGTGCAGATGTTGGTTTCAGGGATAGAGATTGATTTGGCTACTATAGTTAGTGTTTTTGCTGGTTGTGCTGATTCTCGTTTGATATCGTTAGGTAGAGCTGTTCATAGTATTGGAGTGAAAGCTTGTTTTAGTAGAGAAGATCGGTTTTGTAATACATTGCTTGATATGTATTCGAAGTGTGGTGATCTTGATTCTGCTAAAGCTGTGTTTAGGGAGATGAGTGATCGAAGTGTTGTGTCGTATACTTCCATGATTGCTGGTTATGCTAGGGAAGGTTTGGCTGGTGAAGCTGTAAAGTTGTTTGAAGAAATGGAGGAAGAAGGTATTAGTCCTGATGTTTATACCGTCACTGCTGTTTTAAATTGTTGTGCTCGTTATCGGTTGTTAGATGAAGGCAAGCGTGTGCATGAGTGGATAAAGGAAAACGATTTGGGATTTGATATCTTTGTATCAAATGCTCTGATGGATATGTATGCAAAATGTGGAAGCATGCAAGAGGCGGAGCTAGTCTTCTCTGAGATGCGTGTGAAAGATATCATCTCGTGGAACACCATTATTGGTGGGTACTCAAAGAACTGTTACGCCAATGAAGCTCTAAGCCTGTTTAATTTGCTGTTGGAAGAAAAGAGGTTTAGTCCTGATGAGAGAACAGTGGCGTGTGTTCTTCCGGCTTGTGCAAGTCTTTCTGCTTTCGATAAAGGCAGAGAAATCCACGGTTACATCATGAGAAACGGGTATTTCTCAGATCGGCATGTTGCTAATTCGCTTGTAGACATGTACGCGAAATGTGGTGCGTTGTTACTCGCTCATATGCTCTTTGATGATATTGCTTCCAAGGATCTTGTTTCTTGGACAGTGATGATAGCTGGATATGGGATGCACGGGTTTGGAAAAGAGGCGATTGCTCTTTTCAATCAAATGAGACAAGCGGGTATTGAGGCTGATGAAATATCCTTTGTATCTTTGTTGTATGCTTGTAGCCATTCAGGACTAGTTGATGAAGGATGGAGATTCTTTAACATCATGAGACATGAATGCAAGATCGAGCCAACGGTGGAACATTATGCTTGTATAGTTGACATGCTTGCAAGAACTGGAGATTTAATCAAAGCTTATAGGTTCATCGAGAACATGCCAATTCCGCCAGATGCTACAATCTGGGGAGCTTTGCTGTGTGGATGCAGGATACATCATGATGTTAAGTTAGCTGAGAAAGTTGCAGAGAAAGTCTTTGAGCTTGAACCAGAGAACACAGGATATTATGTACTCATGGCAAATATCTACGCAGAAGCTGAGAAATGGGAACAAGTGAAAAGGCTAAGAAAGAGGATAGGGCAGCGCGGATTGAGGAAGAATCCGGGATGTAGCTGGATAGAGATAAAGGGTAGAGTTAACATCTTTGTAGCTGGAGATAGTTCAAACCCGGAAACTGAAAACATTGAAGCTTTTTTGAGAAAGGTAAGAGCTAGAATGATAGAAGAAGGATATTCACCACTGACGAAATACGCTTTGATCGATGCGGAAGAGATGGAAAAGGAAGAAGCTTTATGTGGTCATAGTGAGAAATTAGCAATGGCTTTGGGAATCATAAGCTCTGGACATGGAAAGATCATAAGAGTTACAAAGAATCTAAGAGTTTGTGGAGATTGTCATGAAATGGCCAAGTTCATGTCTAAGTTAACCAGAAGAGAGATTGTCCTAAGAGATTCAAACCGGTTTCACCAATTTAAAGATGGACATTGTTCTTGCAGAGGTTTCTGGTGA

Protein Analysis

871

Amino Acids

97.7

Weight (kDa)

6.31

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 162 - 205 1.2e-07 PPR repeat family
PPR_2 PF13041 259 - 307 2.2e-08 PPR repeat family
PPR PF01535 262 - 292 1.6e-06 PPR repeat
PPR_2 PF13041 361 - 409 3.2e-15 PPR repeat family
PPR_1 PF12854 361 - 389 5.3e-07 PPR repeat
PPR_3 PF13812 361 - 407 8.8e-06 Pentatricopeptide repeat domain
PPR PF01535 363 - 393 1.5e-09 PPR repeat
PPR_2 PF13041 461 - 510 4e-07 PPR repeat family
PPR_2 PF13041 564 - 611 4.3e-09 PPR repeat family
PPR PF01535 566 - 596 2.4e-07 PPR repeat
E_motif PF20431 681 - 743 5.3e-20 E motif
DYW_deaminase PF14432 779 - 871 9.6e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18750
fragaria_vesca FvH4_3g36560 FvH4_3g36640
malus_domestica MD10G1276800.v1.1
prunus_persica Prupe.4G065400_v2.0.a1
pyrus_communis pycom10g23110
rosa_chinensis RchiOBHm_Chr5g0011421
rosa_laevigata RLG00000031832
rosa_multiflora Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii Rroxscaffold_1G00065030
rosa_rugosa Rorug04G0456900
rosa_samantha Rh5BG083800 Rh5CG097300
rosa_wichuraiana Rw5G007710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 416, 1094, 1623
AccII CGCG 2 cut(s) 1634, 2193
AciI CCGC 6 cut(s) 87, 1352, 1781, 1994, 2193, 2372
AclWI GGATC 3 cut(s) 272, 403, 1698
AcoI YGGCCR 1 cut(s) 2511
AcsI RAATTY 4 cut(s) 19, 388, 700, 793
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 3 cut(s) 1418, 1631, 2118
AflIII ACRYGT 1 cut(s) 1626
AgeI ACCGGT 1 cut(s) 2565
AhlI ACTAGT 1 cut(s) 1843
Alw21I GWGCWC 2 cut(s) 748, 1225
Alw26I GTCTC 2 cut(s) 1768, 1873
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 3 cut(s) 272, 403, 1698
AlwNI CAGNNNCTG 1 cut(s) 2144
AoxI GGCC 1 cut(s) 2511
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 2 cut(s) 646, 2188
ApoI RAATTY 4 cut(s) 19, 388, 700, 793
AseI ATTAAT 1 cut(s) 804
AsiGI ACCGGT 1 cut(s) 2565
AspLEI GCGC 1 cut(s) 2193
AsuC2I CCSGG 2 cut(s) 2211, 2276
AsuHPI GGTGA 6 cut(s) 25, 533, 1046, 1148, 2334, 2564
AsuII TTCGAA 4 cut(s) 100, 320, 386, 1025
BaeGI GKGCMC 1 cut(s) 748
BalI TGGCCA 1 cut(s) 2513
BauI CACGAG 1 cut(s) 1393
BbsI GAAGAC 1 cut(s) 1354
Bbv12I GWGCWC 2 cut(s) 748, 1225
BbvI GCAGC 2 cut(s) 658, 2200
BccI CCATC 5 cut(s) 329, 1309, 1851, 2374, 2579
BceAI ACGGC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 2031
BcnI CCSGG 2 cut(s) 2211, 2276
BcoDI GTCTC 2 cut(s) 1768, 1873
BcuI ACTAGT 1 cut(s) 1843
BfaI CTAG 5 cut(s) 230, 1119, 1358, 1844, 2319
BfmI CTRYAG 1 cut(s) 894
BfuI GTATCC 1 cut(s) 2031
BisI GCNGC 3 cut(s) 88, 647, 2189
BlsI GCNGC 3 cut(s) 89, 648, 2190
Bme1390I CCNGG 2 cut(s) 2211, 2276
BmrFI CCNGG 2 cut(s) 2211, 2276
BmsI GCATC 6 cut(s) 178, 1362, 1719, 1990, 2021, 2359
BpiI GAAGAC 1 cut(s) 1354
BpmI CTGGAG 2 cut(s) 1968, 2280
Bpu14I TTCGAA 4 cut(s) 100, 320, 386, 1025
BpuMI CCSGG 2 cut(s) 2211, 2276
Bsa29I ATCGAT 1 cut(s) 2367
BsaAI YACGTR 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 1564, 1686
BsaWI WCCGGW 1 cut(s) 2565
Bse118I RCCGGY 1 cut(s) 2565
Bse1I ACTGG 1 cut(s) 1951
Bse3DI GCAATG 2 cut(s) 1007, 2430
Bse8I GATNNNNATC 1 cut(s) 276
BseCI ATCGAT 1 cut(s) 2367
BseDI CCNNGG 2 cut(s) 1564, 1686
BseGI GGATG 4 cut(s) 1734, 1862, 2036, 2219
BseJI GATNNNNATC 1 cut(s) 276
BseMI GCAATG 2 cut(s) 1007, 2430
BseMII CTCAG 6 cut(s) 762, 822, 1359, 1608, 2052, 2136
BseNI ACTGG 1 cut(s) 1951
BseRI GAGGAG 2 cut(s) 45, 654
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 2 cut(s) 658, 2200
BsgI GTGCAG 1 cut(s) 875
Bsh1236I CGCG 2 cut(s) 1634, 2193
BshFI GGCC 1 cut(s) 2513
BshTI ACCGGT 1 cut(s) 2565
BshVI ATCGAT 1 cut(s) 2367
BsiHKAI GWGCWC 2 cut(s) 748, 1225
BsiSI CCGG 4 cut(s) 1520, 2210, 2276, 2566
BsmAI GTCTC 2 cut(s) 1768, 1873
BsmI GAATGC 1 cut(s) 1892
BsnI GGCC 1 cut(s) 2513
Bsp119I TTCGAA 4 cut(s) 100, 320, 386, 1025
Bsp1286I GDGCHC 2 cut(s) 748, 1225
BspACI CCGC 6 cut(s) 87, 1352, 1781, 1994, 2193, 2372
BspANI GGCC 1 cut(s) 2513
BspCNI CTCAG 6 cut(s) 763, 823, 1360, 1607, 2053, 2137
BspDI ATCGAT 1 cut(s) 2367
BspFNI CGCG 2 cut(s) 1634, 2193
BspHI TCATGA 4 cut(s) 1575, 1875, 2044, 2503
BspPI GGATC 3 cut(s) 272, 403, 1698
BspT104I TTCGAA 4 cut(s) 100, 320, 386, 1025
BsrDI GCAATG 2 cut(s) 1007, 2430
BsrFI RCCGGY 1 cut(s) 2565
BsrI ACTGG 1 cut(s) 1951
BssAI RCCGGY 1 cut(s) 2565
BssECI CCNNGG 2 cut(s) 1564, 1686
BssNAI GTATAC 2 cut(s) 417, 1095
BssSI CACGAG 1 cut(s) 1393
BssT1I CCWWGG 1 cut(s) 1686
Bst1107I GTATAC 2 cut(s) 417, 1095
Bst2BI CACGAG 1 cut(s) 1393
Bst4CI ACNGT 7 cut(s) 139, 1198, 1430, 1504, 1568, 1708, 1906
Bst6I CTCTTC 2 cut(s) 2370, 2533
BstBAI YACGTR 1 cut(s) 749
BstBI TTCGAA 4 cut(s) 100, 320, 386, 1025
BstC8I GCNNGC 4 cut(s) 510, 1250, 1343, 1938
BstDSI CCRYGG 1 cut(s) 1564
BstF5I GGATG 4 cut(s) 1734, 1862, 2036, 2219
BstFNI CGCG 2 cut(s) 1634, 2193
BstHHI GCGC 1 cut(s) 2193
BstMAI GTCTC 2 cut(s) 1768, 1873
BstMWI GCNNNNNNNGC 5 cut(s) 917, 1115, 1139, 1442, 1993
BstNSI RCATGY 5 cut(s) 1345, 1607, 1630, 1936, 1987
BstSCI CCNGG 2 cut(s) 2209, 2274
BstSFI CTRYAG 1 cut(s) 894
BstSLI GKGCMC 1 cut(s) 748
BstUI CGCG 2 cut(s) 1634, 2193
BstV1I GCAGC 2 cut(s) 658, 2200
BstV2I GAAGAC 1 cut(s) 1354
BstX2I RGATCY 1 cut(s) 1690
BstYI RGATCY 1 cut(s) 1690
BstZ17I GTATAC 2 cut(s) 417, 1095
Bsu15I ATCGAT 1 cut(s) 2367
BsuI GTATCC 1 cut(s) 2031
BsuRI GGCC 1 cut(s) 2513
BsuTUI ATCGAT 1 cut(s) 2367
BtgI CCRYGG 1 cut(s) 1564
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 1734, 1862, 2036, 2219
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 4 cut(s) 1200, 1509, 1713, 2345
Cac8I GCNNGC 4 cut(s) 510, 1250, 1343, 1938
CaiI CAGNNNCTG 1 cut(s) 2144
CciI TCATGA 4 cut(s) 1575, 1875, 2044, 2503
CfoI GCGC 1 cut(s) 2193
Cfr10I RCCGGY 1 cut(s) 2565
ClaI ATCGAT 1 cut(s) 2367
Csp6I GTAC 3 cut(s) 1417, 1630, 2117
CspAI ACCGGT 1 cut(s) 2565
CviQI GTAC 3 cut(s) 1417, 1630, 2117
DraI TTTAAA 2 cut(s) 1212, 2581
EaeI YGGCCR 1 cut(s) 2511
Eam1104I CTCTTC 2 cut(s) 2370, 2533
EarI CTCTTC 2 cut(s) 2370, 2533
EciI GGCGGA 2 cut(s) 1367, 1983
Eco130I CCWWGG 1 cut(s) 1686
Eco32I GATATC 3 cut(s) 936, 1294, 1387
Eco57I CTGAAG 1 cut(s) 287
EcoRI GAATTC 2 cut(s) 700, 793
EcoRV GATATC 3 cut(s) 936, 1294, 1387
EcoT14I CCWWGG 1 cut(s) 1686
ErhI CCWWGG 1 cut(s) 1686
FauI CCCGC 1 cut(s) 1774
FauNDI CATATG 1 cut(s) 1662
FblI GTMKAC 3 cut(s) 416, 1094, 1623
Fnu4HI GCNGC 3 cut(s) 88, 647, 2189
FokI GGATG 4 cut(s) 1741, 1869, 2043, 2226
Fsp4HI GCNGC 3 cut(s) 88, 647, 2189
FspBI CTAG 5 cut(s) 230, 1119, 1358, 1844, 2319
GlaI GCGC 1 cut(s) 2192
GluI GCNGC 3 cut(s) 88, 647, 2189
GsuI CTGGAG 2 cut(s) 1968, 2280
HaeIII GGCC 1 cut(s) 2513
HapII CCGG 4 cut(s) 1520, 2210, 2276, 2566
HhaI GCGC 1 cut(s) 2193
Hin6I GCGC 1 cut(s) 2191
HinP1I GCGC 1 cut(s) 2191
HincII GTYRAC 3 cut(s) 1930, 2245, 2532
HindII GTYRAC 3 cut(s) 1930, 2245, 2532
HindIII AAGCTT 5 cut(s) 34, 972, 1962, 2295, 2394
HpaI GTTAAC 2 cut(s) 2245, 2532
HpaII CCGG 4 cut(s) 1520, 2210, 2276, 2566
HphI GGTGA 6 cut(s) 25, 533, 1046, 1148, 2334, 2564
Hpy166II GTNNAC 7 cut(s) 417, 746, 1095, 1624, 1930, 2245, 2532
Hpy188I TCNGA 7 cut(s) 83, 145, 282, 732, 1314, 1369, 1597
Hpy8I GTNNAC 7 cut(s) 417, 746, 1095, 1624, 1930, 2245, 2532
HpyAV CCTTC 6 cut(s) 67, 1118, 1166, 1238, 1847, 2327
HpyCH4III ACNGT 7 cut(s) 139, 1198, 1430, 1504, 1568, 1708, 1906
HpyCH4IV ACGT 1 cut(s) 748
HpyF10VI GCNNNNNNNGC 5 cut(s) 917, 1115, 1139, 1442, 1993
HpySE526I ACGT 1 cut(s) 748
HspAI GCGC 1 cut(s) 2191
KspAI GTTAAC 2 cut(s) 2245, 2532
LmnI GCTCC 2 cut(s) 1354, 2015
Lsp1109I GCAGC 2 cut(s) 658, 2200
LweI GCATC 6 cut(s) 178, 1362, 1719, 1990, 2021, 2359
MaeI CTAG 5 cut(s) 230, 1119, 1358, 1844, 2319
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 8 cut(s) 13, 181, 521, 1198, 1430, 1568, 1650, 2470
MflI RGATCY 1 cut(s) 1690
MhlI GDGCHC 2 cut(s) 748, 1225
MlsI TGGCCA 1 cut(s) 2513
MluNI TGGCCA 1 cut(s) 2513
MmeI TCCRAC 1 cut(s) 1449
Mox20I TGGCCA 1 cut(s) 2513
MscI TGGCCA 1 cut(s) 2513
MslI CAYNNNNRTG 1 cut(s) 2046
Msp20I TGGCCA 1 cut(s) 2513
MspI CCGG 4 cut(s) 1520, 2210, 2276, 2566
MspR9I CCNGG 2 cut(s) 2211, 2276
Mva1269I GAATGC 1 cut(s) 1892
MvnI CGCG 2 cut(s) 1634, 2193
MwoI GCNNNNNNNGC 5 cut(s) 917, 1115, 1139, 1442, 1993
NciI CCSGG 2 cut(s) 2211, 2276
NdeI CATATG 1 cut(s) 1662
NmuCI GTSAC 3 cut(s) 13, 521, 1198
NspI RCATGY 5 cut(s) 1345, 1607, 1630, 1936, 1987
NspV TTCGAA 4 cut(s) 100, 320, 386, 1025
PaeI GCATGC 1 cut(s) 1345
PagI TCATGA 4 cut(s) 1575, 1875, 2044, 2503
PciI ACATGT 1 cut(s) 1626
PcsI WCGNNNNNNNCGW 1 cut(s) 2364
PctI GAATGC 1 cut(s) 1892
PfoI TCCNGGA 1 cut(s) 2209
PinAI ACCGGT 1 cut(s) 2565
PkrI GCNGC 3 cut(s) 89, 648, 2190
Ppu21I YACGTR 1 cut(s) 749
PscI ACATGT 1 cut(s) 1626
PshBI ATTAAT 1 cut(s) 804
PstNI CAGNNNCTG 1 cut(s) 2144
PsuI RGATCY 1 cut(s) 1690
RsaI GTAC 3 cut(s) 1418, 1631, 2118
RsaNI GTAC 3 cut(s) 1417, 1630, 2117
RseI CAYNNNNRTG 1 cut(s) 2046
SatI GCNGC 3 cut(s) 88, 647, 2189
ScrFI CCNGG 2 cut(s) 2211, 2276
SduI GDGCHC 2 cut(s) 748, 1225
SfaNI GCATC 6 cut(s) 178, 1362, 1719, 1990, 2021, 2359
SfcI CTRYAG 1 cut(s) 894
SfuI TTCGAA 4 cut(s) 100, 320, 386, 1025
SmiMI CAYNNNNRTG 1 cut(s) 2046
SpeI ACTAGT 1 cut(s) 1843
SphI GCATGC 1 cut(s) 1345
SsiI CCGC 6 cut(s) 87, 1352, 1781, 1994, 2193, 2372
SspI AATATT 1 cut(s) 493
SspMI CTAG 5 cut(s) 230, 1119, 1358, 1844, 2319
StyD4I CCNGG 2 cut(s) 2209, 2274
StyI CCWWGG 1 cut(s) 1686
TaaI ACNGT 7 cut(s) 139, 1198, 1430, 1504, 1568, 1708, 1906
TaiI ACGT 1 cut(s) 751
TatI WGTACW 1 cut(s) 2116
TauI GCSGC 1 cut(s) 90
TscAI CASTG 4 cut(s) 1207, 1509, 1713, 2352
TseFI GTSAC 3 cut(s) 13, 521, 1198
TseI GCWGC 2 cut(s) 646, 2188
Tsp45I GTSAC 3 cut(s) 13, 521, 1198
TspGWI ACGGA 2 cut(s) 220, 837
TspRI CASTG 4 cut(s) 1207, 1509, 1713, 2352
VneI GTGCAC 1 cut(s) 744
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 4 cut(s) 19, 388, 700, 793
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 5 cut(s) 1345, 1607, 1630, 1936, 1987
XcmI CCANNNNNNNNNTGG 1 cut(s) 2582
XmiI GTMKAC 3 cut(s) 416, 1094, 1623
XspI CTAG 5 cut(s) 230, 1119, 1358, 1844, 2319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.