Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016045

Physical Location & Seq

Genomic Coordinates Forward (+)

8574517 .. 8577153

Gene Structure 2637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGTTGATACTCTGCACAGCCTCACCAAACCAGTCATGGGTCTCTCCTTCTTCTTCTTACCATGACATAAAGCCAAAGCCTTTGAAGCGCTGCTTCATCTTCTTCAAACCCAATTCAACCACCTCTCTGTTATCTCTGAATTTCTCTAATTTTCGTGCCAAATTTCGTGTCTCGGCGACCACCCTTGCCGGAACCACTGACCGGAAAACTGCGGACAAGAATGTGAAGATTTCCGAACTCTGTGAATTGGGTAATCTGAAAGAGGCGGTGGAAATGGTGTGCGGGTCTGAAAGCTCCGATCTTGATTTGGTGACTTACTGCTCCGTGTTGGAGCTCTGTGCCGGAACTAAGTCTCTGCAAGATGGGAAGAGGGTTCACTCGGTTCTCTGTGACCATGGAGTAGATGTTGATAGGTATGTGGGTGCAAAACTTGTGTTCATGTATGTGCATTGTGGGGATTTAAGAGAAGCGAGGCGGGTTTTCGATGAATTATCGAATGCGAAAGTGTTTCTATGGAACCTTTTAATCAATGAGTATGCGAAGATTCGTAATTTTAGAGAAGGTGTGTACTTATTTGGGAAGATGCAGGAGTTGGGTATTCAACCGAATTCGTATACGTTTTCTTGTATTTTGAAGTGTTTTTCTGCTCTGGGGTGTGTTAAGGAAGGTGAGTGGGTTCATGGGTATGTGTGGAAACTGGGTTTTAGCTCTGATAATACTGTGGTGAATTCTCTGATGGCGTTTTATTTCAAGAATAGAAGAGTTGAAAGTGCACGGAAGGTGTTTGATGAATTGCGTGACAGAGATGTTATATCGTGGAATTCGATGATTAGTGCGTATGTGTCGAATGGTGCTGCGGAGAAGGGAGTTGAGGTTTTCAGGCAGATGTTTTGTTCTGGGATTGATGTGGACTTGGCTACGATTATCAATGTTCTAATGGCGTGTTCGGACTGTGCAGATCTTGCATTGGGTAGGGTGGTTCATGCTTATGCGATAAAAGCTGGTTTCAACATGGATGTTATGTTGTGTAATAATGTTCTAGATATGTATTCAAAATGTGGCGATTTGAGTGATGCAATTCGAGTTTTTGAGAAGATGGATCAAAGAAGTGTTGTGTCGTGGACTTCAATGATAGCAGGTTATGTTCGTGAAGGTCTTTCAGACAAGGCAATTGAGTTGTTTTGTGAAATGGAAGAGAATGGTGTTAGCCCAGATGGTTATACAATCACAAGCATACTTCATGCATGTGCTTCTAGTGGCTCGTTGGAAAAAGGCAAGGATATACACAAGTATATTAGGGAACATGGCATGGACTCGAGTTTGTTTGTCTGTAATTCGCTCATGGATATGTATGCAAAATGTGGAAGCATGGAAGACGCTGACTCAGTTTTTTCTCATATGCTTAGAAAGGACATTGTGTCATGGAATACCATGATCGGAGGTTACTCCAAAAACTGTCTTCCAAATGAAGCTCTTGAACTCTTTTCTGATATGCAACAGAAATTTAAACCTGACAGCATGACAATTGCTAGTGTCCTTCCCGCTTGTGCAAGCCTGGCAGCTCTAGACAAAGGTCAAGAGATCCATGGTTATTTACTGAGAAATGGATACTTCTTGGATCGATATGTTGCCAATGCACTTGTTGACATGTATGTCAAGTGCGGGGTACTAGTTCTTGCTCGGGTACTGTTTGATATGATTCCAGTGAAGGATCTGATCTCTTGGACTGTGATAATTGCTGGTTATGGGATGCATGGATTTGGAAGGGAAGCTATTGCTGCGTTTAATGAGATGAACAAGGCTGGAATTGAACCGGACAGCATTTCCTTCATCTCTATACTTTATGCTTGCAGTCATTCTGGATTAGTTCAGGAAGGATGGAGATTCTTTGATATTATGAGAAATGATTACAAAATCGAGCCCATGTTGGAGCATTATGCTTGTATGGTAGATCTTCTTGCTCGTACTGGGAATCTAACCAAGGCCATGAAGATAGAGTCCCTAGTGAAGAAGTTTAGATTGAGGATGAAGGAAGATGGCTATAATCCTAAAATGCAGTACGCTTTGATTAATGCAGATGAGGTGGAAAAAGAGGTGGCTCTCTGTGGGCATAGTGAGAAGTTAGCCATAGCATTTGGGATACTGAACTTGCCACCCGGAAAAACCATACGGGTGACCAAGAATCTACGAGTCTGCGGTGACTGCCATGAGATGGCCAAGTTCATATCCAAGACATCTAGGAGGGAAATTGTTTTGAGAGATTCTAATCGCTTTCATCATATGAAGGATGGAAATTGTTCTTGTAGGGGCTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090698 GO:0097159 GO:0099402 GO:1900865 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

773

Amino Acids

86.68

Weight (kDa)

6.97

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 214	1.4e-10	PPR repeat family
PPR_2	PF13041	268 - 308	5.3e-07	PPR repeat family
PPR	PF01535	271 - 301	1.4e-06	PPR repeat
PPR_2	PF13041	370 - 417	6.9e-15	PPR repeat family
PPR	PF01535	372 - 402	4.9e-10	PPR repeat
PPR_3	PF13812	393 - 452	3.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	470 - 517	5.1e-10	PPR repeat family
PPR	PF01535	473 - 501	6.1e-08	PPR repeat
PPR_2	PF13041	571 - 618	1.5e-08	PPR repeat family
DYW_deaminase	PF14432	680 - 772	1.8e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18750
fragaria_vesca	FvH4_3g36560 FvH4_3g36640
malus_domestica	MD10G1276800.v1.1
prunus_persica	Prupe.4G065400_v2.0.a1
pyrus_communis	pycom10g23110
rosa_chinensis	RchiOBHm_Chr5g0011421
rosa_laevigata	RLG00000031832
rosa_multiflora	Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii	Rroxscaffold_1G00065030
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083800 Rh5CG097300
rosa_wichuraiana	Rw5G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1652
Acc36I	ACCTGC	1 cut(s)	1127
AccB7I	CCANNNNNTGG	1 cut(s)	2212
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	8 cut(s)	212, 266, 282, 475, 857, 1542, 1662, 2196
AclWI	GGATC	4 cut(s)	1107, 1576, 1626, 1719
AcoI	YGGCCR	1 cut(s)	2214
AcsI	RAATTY	6 cut(s)	139, 161, 607, 727, 820, 1502
AfaI	GTAC	5 cut(s)	569, 1668, 1686, 1966, 2060
AfeI	AGCGCT	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	37, 201, 2212
AflIII	ACRYGT	1 cut(s)	1647
AhdI	GACNNNNNGTC	1 cut(s)	1417
AhlI	ACTAGT	1 cut(s)	1669
AjnI	CCWGG	1 cut(s)	1554
AluBI	AGCT	7 cut(s)	294, 334, 708, 1001, 1472, 1562, 1772
AluI	AGCT	7 cut(s)	294, 334, 708, 1001, 1472, 1562, 1772
Alw21I	GWGCWC	2 cut(s)	336, 775
Alw26I	GTCTC	3 cut(s)	46, 175, 357
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	4 cut(s)	1107, 1576, 1626, 1719
Ama87I	CYCGRG	2 cut(s)	1315, 1680
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	1983, 2214
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	4 cut(s)	90, 854, 1559, 1778
ApoI	RAATTY	6 cut(s)	139, 161, 607, 727, 820, 1502
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AseI	ATTAAT	1 cut(s)	2070
Asp700I	GAANNNNTTC	1 cut(s)	2296
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	2157
AsuHPI	GGTGA	6 cut(s)	15, 322, 680, 736, 2185, 2210
AvaI	CYCGRG	2 cut(s)	1315, 1680
BaeGI	GKGCMC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	2216
BanII	GRGCYC	2 cut(s)	336, 1923
BbsI	GAAGAC	2 cut(s)	1380, 1451
Bbv12I	GWGCWC	2 cut(s)	336, 775
BbvI	GCAGC	4 cut(s)	77, 841, 1571, 1765
BccI	CCATC	8 cut(s)	356, 730, 1090, 1208, 1872, 2030, 2206, 2282
BciT130I	CCWGG	1 cut(s)	1556
BciVI	GTATCC	2 cut(s)	1601, 2133
BcnI	CCSGG	1 cut(s)	2157
BcoDI	GTCTC	3 cut(s)	46, 175, 357
BcuI	ACTAGT	1 cut(s)	1669
BfaI	CTAG	7 cut(s)	1040, 1254, 1530, 1565, 1670, 2003, 2238
BfoI	RGCGCY	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	1127
BfuI	GTATCC	2 cut(s)	1601, 2133
BglII	AGATCT	2 cut(s)	958, 1951
BisI	GCNGC	4 cut(s)	91, 855, 1560, 1779
BlsI	GCNGC	4 cut(s)	92, 856, 1561, 1780
Bme1390I	CCNGG	2 cut(s)	1556, 2157
BmeRI	GACNNNNNGTC	1 cut(s)	1417
BmeT110I	CYCGRG	2 cut(s)	1315, 1680
BmiI	GGNNCC	2 cut(s)	193, 518
BmrFI	CCNGG	2 cut(s)	1556, 2157
BmrI	ACTGGG	2 cut(s)	707, 1977
BmsI	GCATC	3 cut(s)	573, 1063, 1740
BmuI	ACTGGG	2 cut(s)	707, 1977
BoxI	GACNNNNGTC	1 cut(s)	1572
BpiI	GAAGAC	2 cut(s)	1380, 1451
BpuMI	CCSGG	1 cut(s)	2157
Bsa29I	ATCGAT	1 cut(s)	1621
BsaBI	GATNNNNATC	1 cut(s)	2265
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	394, 1585, 1980
BsaWI	WCCGGW	2 cut(s)	201, 1813
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 858, 888
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 201, 2212
Bse1I	ACTGG	4 cut(s)	31, 702, 1703, 1972
Bse8I	GATNNNNATC	1 cut(s)	2265
BseBI	CCWGG	1 cut(s)	1556
BseCI	ATCGAT	1 cut(s)	1621
BseDI	CCNNGG	3 cut(s)	394, 1585, 1980
BseGI	GGATG	5 cut(s)	1021, 1755, 1883, 2031, 2293
BseJI	GATNNNNATC	1 cut(s)	2265
BseLI	CCNNNNNNNGG	3 cut(s)	37, 201, 2212
BseMII	CTCAG	2 cut(s)	1398, 1589
BseNI	ACTGG	4 cut(s)	31, 702, 1703, 1972
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	4 cut(s)	77, 841, 1571, 1765
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	1985, 2216
BshVI	ATCGAT	1 cut(s)	1621
BsiHKAI	GWGCWC	2 cut(s)	336, 775
BsiHKCI	CYCGRG	2 cut(s)	1315, 1680
BsiSI	CCGG	5 cut(s)	189, 202, 342, 1814, 2157
BslFI	GGGAC	1 cut(s)	1984
BslI	CCNNNNNNNGG	3 cut(s)	37, 201, 2212
BsmAI	GTCTC	3 cut(s)	46, 175, 357
BsmFI	GGGAC	1 cut(s)	1984
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	2 cut(s)	1985, 2216
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	1315, 1680
Bsp1286I	GDGCHC	3 cut(s)	336, 775, 1923
Bsp143I	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
Bsp19I	CCATGG	2 cut(s)	394, 1585
BspACI	CCGC	8 cut(s)	212, 266, 282, 475, 857, 1542, 1662, 2196
BspANI	GGCC	2 cut(s)	1985, 2216
BspCNI	CTCAG	2 cut(s)	1397, 1590
BspDI	ATCGAT	1 cut(s)	1621
BspLI	GGNNCC	2 cut(s)	193, 518
BspMI	ACCTGC	1 cut(s)	1127
BspPI	GGATC	4 cut(s)	1107, 1576, 1626, 1719
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	31, 702, 1703, 1972
BssECI	CCNNGG	3 cut(s)	394, 1585, 1980
BssMI	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
BssNAI	GTATAC	1 cut(s)	615
BssT1I	CCWWGG	3 cut(s)	394, 1585, 1980
Bst1107I	GTATAC	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	1556
Bst4CI	ACNGT	5 cut(s)	721, 953, 1457, 1689, 1729
Bst6I	CTCTTC	3 cut(s)	362, 754, 1188
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstC8I	GCNNGC	2 cut(s)	1552, 1849
BstDEI	CTNAG	4 cut(s)	348, 1384, 1403, 1598
BstDSI	CCRYGG	2 cut(s)	394, 1585
BstEII	GGTNACC	1 cut(s)	2173
BstF5I	GGATG	5 cut(s)	1021, 1755, 1883, 2031, 2293
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	9 cut(s)	301, 961, 1102, 1437, 1584, 1621, 1714, 1719, 1954
BstMAI	GTCTC	3 cut(s)	46, 175, 357
BstMBI	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 962, 998, 1556, 1778, 2202
BstNI	CCWGG	1 cut(s)	1556
BstNSI	RCATGY	2 cut(s)	1248, 1651
BstPAI	GACNNNNGTC	1 cut(s)	1572
BstPI	GGTNACC	1 cut(s)	2173
BstSCI	CCNGG	2 cut(s)	1554, 2155
BstSLI	GKGCMC	1 cut(s)	775
BstV1I	GCAGC	4 cut(s)	77, 841, 1571, 1765
BstV2I	GAAGAC	2 cut(s)	1380, 1451
BstX2I	RGATCY	4 cut(s)	958, 1581, 1711, 1951
BstYI	RGATCY	4 cut(s)	958, 1581, 1711, 1951
BstZ17I	GTATAC	1 cut(s)	615
Bsu15I	ATCGAT	1 cut(s)	1621
BsuI	GTATCC	2 cut(s)	1601, 2133
BsuRI	GGCC	2 cut(s)	1985, 2216
BsuTUI	ATCGAT	1 cut(s)	1621
BtgI	CCRYGG	2 cut(s)	394, 1585
BtsCI	GGATG	5 cut(s)	1021, 1755, 1883, 2031, 2293
BtsIMutI	CAGTG	2 cut(s)	195, 1710
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	2 cut(s)	1552, 1849
CfoI	GCGC	1 cut(s)	90
ClaI	ATCGAT	1 cut(s)	1621
CseI	GACGC	1 cut(s)	1385
Csp6I	GTAC	5 cut(s)	568, 1667, 1685, 1965, 2059
CviQI	GTAC	5 cut(s)	568, 1667, 1685, 1965, 2059
DdeI	CTNAG	4 cut(s)	348, 1384, 1403, 1598
DpnI	GATC	9 cut(s)	300, 960, 1101, 1436, 1583, 1620, 1713, 1718, 1953
DpnII	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
DraI	TTTAAA	1 cut(s)	1507
DrdI	GACNNNNNNGTC	1 cut(s)	1652
DriI	GACNNNNNGTC	1 cut(s)	1417
DseDI	GACNNNNNNGTC	1 cut(s)	1652
EaeI	YGGCCR	1 cut(s)	2214
Eam1104I	CTCTTC	3 cut(s)	362, 754, 1188
Eam1105I	GACNNNNNGTC	1 cut(s)	1417
EarI	CTCTTC	3 cut(s)	362, 754, 1188
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	3 cut(s)	394, 1585, 1980
Eco24I	GRGCYC	2 cut(s)	336, 1923
Eco31I	GGTCTC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	334
Eco88I	CYCGRG	2 cut(s)	1315, 1680
Eco91I	GGTNACC	1 cut(s)	2173
EcoICRI	GAGCTC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	2173
EcoRI	GAATTC	3 cut(s)	607, 727, 820
EcoRII	CCWGG	1 cut(s)	1554
EcoT14I	CCWWGG	3 cut(s)	394, 1585, 1980
EcoT22I	ATGCAT	2 cut(s)	1246, 1755
EcoT38I	GRGCYC	2 cut(s)	336, 1923
ErhI	CCWWGG	3 cut(s)	394, 1585, 1980
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	1984
FauI	CCCGC	4 cut(s)	275, 468, 1549, 1655
FauNDI	CATATG	2 cut(s)	1398, 2280
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	4 cut(s)	91, 855, 1560, 1779
FokI	GGATG	5 cut(s)	1028, 1762, 1890, 2038, 2300
FriOI	GRGCYC	2 cut(s)	336, 1923
Fsp4HI	GCNGC	4 cut(s)	91, 855, 1560, 1779
FspBI	CTAG	7 cut(s)	1040, 1254, 1530, 1565, 1670, 2003, 2238
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	4 cut(s)	91, 855, 1560, 1779
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	1985, 2216
HapII	CCGG	5 cut(s)	189, 202, 342, 1814, 2157
HgaI	GACGC	1 cut(s)	1385
HhaI	GCGC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	1645
HindII	GTYRAC	1 cut(s)	1645
HpaII	CCGG	5 cut(s)	189, 202, 342, 1814, 2157
HphI	GGTGA	6 cut(s)	15, 322, 680, 736, 2185, 2210
Hpy166II	GTNNAC	7 cut(s)	376, 568, 615, 773, 910, 1122, 1645
Hpy188III	TCNNGA	9 cut(s)	302, 751, 1040, 1148, 1475, 1565, 1577, 1860, 1871
Hpy8I	GTNNAC	7 cut(s)	376, 568, 615, 773, 910, 1122, 1645
HpyCH4III	ACNGT	5 cut(s)	721, 953, 1457, 1689, 1729
HpyCH4IV	ACGT	1 cut(s)	617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 962, 998, 1556, 1778, 2202
HpyF3I	CTNAG	4 cut(s)	348, 1384, 1403, 1598
HpySE526I	ACGT	1 cut(s)	617
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
LmnI	GCTCC	4 cut(s)	299, 326, 331, 1930
Lsp1109I	GCAGC	4 cut(s)	77, 841, 1571, 1765
LweI	GCATC	3 cut(s)	573, 1063, 1740
MaeI	CTAG	7 cut(s)	1040, 1254, 1530, 1565, 1670, 2003, 2238
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	6 cut(s)	310, 389, 797, 1442, 2173, 2198
MalI	GATC	9 cut(s)	300, 960, 1101, 1436, 1583, 1620, 1713, 1718, 1953
MboI	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
MfeI	CAATTG	2 cut(s)	1170, 1524
MflI	RGATCY	4 cut(s)	958, 1581, 1711, 1951
MhlI	GDGCHC	3 cut(s)	336, 775, 1923
MlsI	TGGCCA	1 cut(s)	2216
MluNI	TGGCCA	1 cut(s)	2216
MlyI	GAGTC	4 cut(s)	1307, 1376, 2006, 2199
MmeI	TCCRAC	3 cut(s)	309, 1245, 1908
Mox20I	TGGCCA	1 cut(s)	2216
Mph1103I	ATGCAT	2 cut(s)	1246, 1755
MroXI	GAANNNNTTC	1 cut(s)	2296
MscI	TGGCCA	1 cut(s)	2216
MseI	TTAA	6 cut(s)	461, 524, 660, 1506, 1785, 2070
MslI	CAYNNNNRTG	6 cut(s)	443, 684, 987, 1245, 1346, 2171
Msp20I	TGGCCA	1 cut(s)	2216
MspI	CCGG	5 cut(s)	189, 202, 342, 1814, 2157
MspR9I	CCNGG	2 cut(s)	1556, 2157
MunI	CAATTG	2 cut(s)	1170, 1524
Mva1269I	GAATGC	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	1556
MwoI	GCNNNNNNNGC	6 cut(s)	85, 962, 998, 1556, 1778, 2202
NciI	CCSGG	1 cut(s)	2157
NcoI	CCATGG	2 cut(s)	394, 1585
NdeI	CATATG	2 cut(s)	1398, 2280
NdeII	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
NlaIV	GGNNCC	2 cut(s)	193, 518
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	5 cut(s)	310, 389, 797, 2173, 2198
NsiI	ATGCAT	2 cut(s)	1246, 1755
NspI	RCATGY	2 cut(s)	1248, 1651
PaeR7I	CTCGAG	1 cut(s)	1315
PciI	ACATGT	1 cut(s)	1647
PcsI	WCGNNNNNNNCGW	1 cut(s)	821
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	2296
PfeI	GAWTC	6 cut(s)	544, 1699, 1884, 1972, 2182, 2261
PflMI	CCANNNNNTGG	1 cut(s)	2212
PkrI	GCNGC	4 cut(s)	92, 856, 1561, 1780
PleI	GAGTC	4 cut(s)	1307, 1376, 2005, 2198
PpsI	GAGTC	4 cut(s)	1307, 1376, 2005, 2198
PscI	ACATGT	1 cut(s)	1647
PshAI	GACNNNNGTC	1 cut(s)	1572
PshBI	ATTAAT	1 cut(s)	2070
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	1554
PspEI	GGTNACC	1 cut(s)	2173
PspGI	CCWGG	1 cut(s)	1554
PspN4I	GGNNCC	2 cut(s)	193, 518
PspXI	VCTCGAGB	1 cut(s)	1315
PsuI	RGATCY	4 cut(s)	958, 1581, 1711, 1951
RsaI	GTAC	5 cut(s)	569, 1668, 1686, 1966, 2060
RsaNI	GTAC	5 cut(s)	568, 1667, 1685, 1965, 2059
RseI	CAYNNNNRTG	6 cut(s)	443, 684, 987, 1245, 1346, 2171
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	6 cut(s)	461, 524, 660, 1506, 1785, 2070
SatI	GCNGC	4 cut(s)	91, 855, 1560, 1779
Sau3AI	GATC	9 cut(s)	298, 958, 1099, 1434, 1581, 1618, 1711, 1716, 1951
SchI	GAGTC	4 cut(s)	1307, 1376, 2006, 2199
ScrFI	CCNGG	2 cut(s)	1556, 2157
SduI	GDGCHC	3 cut(s)	336, 775, 1923
SfaNI	GCATC	3 cut(s)	573, 1063, 1740
Sfr274I	CTCGAG	1 cut(s)	1315
SlaI	CTCGAG	1 cut(s)	1315
SmiMI	CAYNNNNRTG	6 cut(s)	443, 684, 987, 1245, 1346, 2171
SmlI	CTYRAG	1 cut(s)	1315
SmoI	CTYRAG	1 cut(s)	1315
SpeI	ACTAGT	1 cut(s)	1669
SsiI	CCGC	8 cut(s)	212, 266, 282, 475, 857, 1542, 1662, 2196
SspMI	CTAG	7 cut(s)	1040, 1254, 1530, 1565, 1670, 2003, 2238
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	1554, 2155
StyI	CCWWGG	3 cut(s)	394, 1585, 1980
TaaI	ACNGT	5 cut(s)	721, 953, 1457, 1689, 1729
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	8 cut(s)	483, 494, 824, 845, 1081, 1316, 1621, 1917
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	6 cut(s)	544, 1699, 1884, 1972, 2182, 2261
Tru1I	TTAA	6 cut(s)	461, 524, 660, 1506, 1785, 2070
Tru9I	TTAA	6 cut(s)	461, 524, 660, 1506, 1785, 2070
TscAI	CASTG	2 cut(s)	202, 1710
TseFI	GTSAC	5 cut(s)	310, 389, 797, 2173, 2198
TseI	GCWGC	4 cut(s)	90, 854, 1559, 1778
Tsp45I	GTSAC	5 cut(s)	310, 389, 797, 2173, 2198
TspGWI	ACGGA	2 cut(s)	313, 790
TspRI	CASTG	2 cut(s)	202, 1710
Van91I	CCANNNNNTGG	1 cut(s)	2212
VneI	GTGCAC	1 cut(s)	771
VspI	ATTAAT	1 cut(s)	2070
XapI	RAATTY	6 cut(s)	139, 161, 607, 727, 820, 1502
XbaI	TCTAGA	2 cut(s)	1039, 1564
XceI	RCATGY	2 cut(s)	1248, 1651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	1315
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	2296
XspI	CTAG	7 cut(s)	1040, 1254, 1530, 1565, 1670, 2003, 2238
Zsp2I	ATGCAT	2 cut(s)	1246, 1755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.