Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262965.1

Orthogroup ID

OG0016045

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 812

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 812 bp

atgggtcaaagaagtgttgtgtcgtggacttcgatgatagcaggttatgttcgtgaaggtctttcggacaaggcaattgagttgttttgtgaaatggaagagaatggtgttagcccagatggttatacaatcacaagcatacttcatgcatgtgcttgtagtggctcgttggaaaaaggcaaggatacacacaagtatattagggaacatggcatggactcgagtttgtttgtctgtaattcgctcatggatatgtatgcaaaatgtggaagcatggaagacgctgactcagttttttctcatatgcctaggaaggacattgtgtcatggaataccatgatcggaggttactccaaaaactgtcttccaaatgaagctctagaactcttttctgagatgcaacagaaatttaaacctgacagcatgacaattgctagtgtccttcccgcttgtgcaagcctagcagctctagacagaggtcaagagatccatggttatttactgagaaatggatacttcttggatcgatatgttgccaatgcacttgttgacatgtatgtcaagtgcggggtactagttcttgctcgggtactgtttgatatgattccggtgaaggatctgatctcttggactgtgataattgctggttatgggatgcatggatttggaagggaagctattgctgcgtttaatgagatgaaaaaggctggaattgaaccggacagcatttccttcatctctatactttatgcttgcagtcattctggattagttcaggaaggatggagattctttgatattatgagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090698 GO:0097159 GO:0099402 GO:1900865 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

270

Amino Acids

29.99

Weight (kDa)

5.38

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18750
fragaria_vesca	FvH4_3g36560 FvH4_3g36640
malus_domestica	MD10G1276800.v1.1
prunus_persica	Prupe.4G065400_v2.0.a1
pyrus_communis	pycom10g23110
rosa_chinensis	RchiOBHm_Chr5g0011421
rosa_laevigata	RLG00000031832
rosa_multiflora	Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii	Rroxscaffold_1G00065030
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083800 Rh5CG097300
rosa_wichuraiana	Rw5G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	32
AciI	CCGC	2 cut(s)	447, 567
AclWI	GGATC	3 cut(s)	481, 531, 624
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	2 cut(s)	573, 591
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	1 cut(s)	716
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	1 cut(s)	574
AluBI	AGCT	3 cut(s)	377, 467, 677
AluI	AGCT	3 cut(s)	377, 467, 677
AlwI	GGATC	3 cut(s)	481, 531, 624
Ama87I	CYCGRG	2 cut(s)	220, 585
ApeKI	GCWGC	2 cut(s)	464, 683
ApoI	RAATTY	1 cut(s)	407
AspA2I	CCTAGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	622
AvaI	CYCGRG	2 cut(s)	220, 585
AvrII	CCTAGG	1 cut(s)	308
BbsI	GAAGAC	2 cut(s)	285, 356
BbvI	GCAGC	2 cut(s)	476, 670
BccI	CCATC	2 cut(s)	113, 777
BciVI	GTATCC	2 cut(s)	178, 506
BcuI	ACTAGT	1 cut(s)	574
BfaI	CTAG	6 cut(s)	309, 380, 435, 461, 470, 575
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	2 cut(s)	178, 506
BisI	GCNGC	2 cut(s)	465, 684
BlnI	CCTAGG	1 cut(s)	308
BlsI	GCNGC	2 cut(s)	466, 685
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	2 cut(s)	220, 585
BmsI	GCATC	2 cut(s)	387, 645
BoxI	GACNNNNGTC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	285, 356
Bsa29I	ATCGAT	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	308, 490
BsaWI	WCCGGW	2 cut(s)	607, 718
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	308, 490
BseGI	GGATG	2 cut(s)	660, 788
BseMII	CTCAG	3 cut(s)	303, 384, 494
BseXI	GCAGC	2 cut(s)	476, 670
BshVI	ATCGAT	1 cut(s)	526
BsiHKCI	CYCGRG	2 cut(s)	220, 585
BsiSI	CCGG	2 cut(s)	608, 719
BsoBI	CYCGRG	2 cut(s)	220, 585
Bsp143I	GATC	5 cut(s)	339, 486, 523, 616, 621
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	2 cut(s)	447, 567
BspCNI	CTCAG	3 cut(s)	302, 385, 495
BspDI	ATCGAT	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	481, 531, 624
BssECI	CCNNGG	2 cut(s)	308, 490
BssMI	GATC	5 cut(s)	339, 486, 523, 616, 621
BssT1I	CCWWGG	2 cut(s)	308, 490
Bst4CI	ACNGT	3 cut(s)	362, 594, 634
Bst6I	CTCTTC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	457, 754
BstDEI	CTNAG	3 cut(s)	289, 393, 503
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	2 cut(s)	660, 788
BstKTI	GATC	5 cut(s)	342, 489, 526, 619, 624
BstMBI	GATC	5 cut(s)	339, 486, 523, 616, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 683
BstNSI	RCATGY	2 cut(s)	153, 556
BstPAI	GACNNNNGTC	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	476, 670
BstV2I	GAAGAC	2 cut(s)	285, 356
BstX2I	RGATCY	2 cut(s)	486, 616
BstYI	RGATCY	2 cut(s)	486, 616
Bsu15I	ATCGAT	1 cut(s)	526
BsuI	GTATCC	2 cut(s)	178, 506
BsuTUI	ATCGAT	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	660, 788
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	457, 754
ClaI	ATCGAT	1 cut(s)	526
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	572, 590
CviJI	RGCY	7 cut(s)	114, 165, 377, 459, 467, 677, 707
CviKI_1	RGCY	7 cut(s)	114, 165, 377, 459, 467, 677, 707
CviQI	GTAC	2 cut(s)	572, 590
DdeI	CTNAG	3 cut(s)	289, 393, 503
DpnI	GATC	5 cut(s)	341, 488, 525, 618, 623
DpnII	GATC	5 cut(s)	339, 486, 523, 616, 621
DraI	TTTAAA	1 cut(s)	412
DrdI	GACNNNNNNGTC	1 cut(s)	557
DriI	GACNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	93
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	308, 490
Eco88I	CYCGRG	2 cut(s)	220, 585
EcoT14I	CCWWGG	2 cut(s)	308, 490
EcoT22I	ATGCAT	2 cut(s)	151, 660
ErhI	CCWWGG	2 cut(s)	308, 490
FauI	CCCGC	2 cut(s)	454, 560
FauNDI	CATATG	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	465, 684
FokI	GGATG	2 cut(s)	667, 795
Fsp4HI	GCNGC	2 cut(s)	465, 684
FspBI	CTAG	6 cut(s)	309, 380, 435, 461, 470, 575
GluI	GCNGC	2 cut(s)	465, 684
HapII	CCGG	2 cut(s)	608, 719
HgaI	GACGC	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	218, 287, 604, 789
HpaII	CCGG	2 cut(s)	608, 719
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	2 cut(s)	27, 550
Hpy188I	TCNGA	4 cut(s)	67, 344, 394, 621
Hpy188III	TCNNGA	6 cut(s)	53, 380, 470, 482, 765, 776
Hpy8I	GTNNAC	2 cut(s)	27, 550
HpyAV	CCTTC	7 cut(s)	50, 307, 452, 607, 663, 742, 773
HpyCH4III	ACNGT	3 cut(s)	362, 594, 634
HpyCH4V	TGCA	7 cut(s)	149, 260, 400, 455, 542, 658, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 683
HpyF3I	CTNAG	3 cut(s)	289, 393, 503
Kzo9I	GATC	5 cut(s)	339, 486, 523, 616, 621
LpnPI	CCDG	9 cut(s)	27, 129, 429, 621, 630, 693, 732, 750, 761
Lsp1109I	GCAGC	2 cut(s)	476, 670
LweI	GCATC	2 cut(s)	387, 645
MaeI	CTAG	6 cut(s)	309, 380, 435, 461, 470, 575
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	5 cut(s)	341, 488, 525, 618, 623
MboI	GATC	5 cut(s)	339, 486, 523, 616, 621
MboII	GAAGA	3 cut(s)	110, 290, 356
MfeI	CAATTG	2 cut(s)	75, 429
MflI	RGATCY	2 cut(s)	486, 616
MluCI	AATT	6 cut(s)	75, 238, 407, 429, 639, 711
MlyI	GAGTC	2 cut(s)	212, 281
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	338, 470
Mph1103I	ATGCAT	2 cut(s)	151, 660
MseI	TTAA	2 cut(s)	411, 690
MslI	CAYNNNNRTG	2 cut(s)	150, 251
MspI	CCGG	2 cut(s)	608, 719
MunI	CAATTG	2 cut(s)	75, 429
MwoI	GCNNNNNNNGC	2 cut(s)	461, 683
NcoI	CCATGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	5 cut(s)	339, 486, 523, 616, 621
NsiI	ATGCAT	2 cut(s)	151, 660
NspI	RCATGY	2 cut(s)	153, 556
PaeR7I	CTCGAG	1 cut(s)	220
PciI	ACATGT	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	604, 789
PkrI	GCNGC	2 cut(s)	466, 685
PleI	GAGTC	2 cut(s)	212, 281
PpsI	GAGTC	2 cut(s)	212, 281
PscI	ACATGT	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	477
PspXI	VCTCGAGB	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	486, 616
RsaI	GTAC	2 cut(s)	573, 591
RsaNI	GTAC	2 cut(s)	572, 590
RseI	CAYNNNNRTG	2 cut(s)	150, 251
SaqAI	TTAA	2 cut(s)	411, 690
SatI	GCNGC	2 cut(s)	465, 684
Sau3AI	GATC	5 cut(s)	339, 486, 523, 616, 621
SchI	GAGTC	2 cut(s)	212, 281
SetI	ASST	8 cut(s)	46, 61, 349, 379, 418, 469, 481, 679
SfaNI	GCATC	2 cut(s)	387, 645
Sfr274I	CTCGAG	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	2 cut(s)	150, 251
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	574
Sse9I	AATT	6 cut(s)	75, 238, 407, 429, 639, 711
SsiI	CCGC	2 cut(s)	447, 567
SspMI	CTAG	6 cut(s)	309, 380, 435, 461, 470, 575
StyI	CCWWGG	2 cut(s)	308, 490
TaaI	ACNGT	3 cut(s)	362, 594, 634
TaqI	TCGA	3 cut(s)	32, 221, 526
TasI	AATT	6 cut(s)	75, 238, 407, 429, 639, 711
TfiI	GAWTC	2 cut(s)	604, 789
Tru1I	TTAA	2 cut(s)	411, 690
Tru9I	TTAA	2 cut(s)	411, 690
TseI	GCWGC	2 cut(s)	464, 683
TspDTI	ATGAA	4 cut(s)	134, 387, 713, 724
XapI	RAATTY	1 cut(s)	407
XbaI	TCTAGA	2 cut(s)	379, 469
XceI	RCATGY	2 cut(s)	153, 556
XhoI	CTCGAG	1 cut(s)	220
XmaJI	CCTAGG	1 cut(s)	308
XspI	CTAG	6 cut(s)	309, 380, 435, 461, 470, 575
Zsp2I	ATGCAT	2 cut(s)	151, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.