Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016045

Physical Location & Seq

Genomic Coordinates Forward (+)

7558989 .. 7561888

Gene Structure 2900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGTTGATGCTCTGCACAGCCTCACCAAACCAGTCATGGGTCTCTCCTTCTTCTTCTTCTTACCATGACATAAAGCCAAAGCCTTTGAAGCCCTGCTTCATCTTCTTCAAACCCAATTCAACAACCTCTCTGTTATCTCTGAATTTCTCTAATTTTCGCGCCAAATTTCGCGTCTCGGCGACCGCCCTCGCCGGAACCACTGACCGGAAAACTGCGGACAAGAATGTGAAGATTTCCGAACTCTGTGAATTGGGTAATCTGAAAGAGGCGGTGGAAATGGTGTGCGGGTCTGAAAGCTCCGATCTTGAGTTGGTGACTTACTGCTCCGTGTTGGAGCTCTGTGCCGGAACTAAGTCTCTGCAAGACGGGAAGAGGGTTCACTCTGTTCTTTGTGACCATGGAGTAGATGTTGATGGGTATGTGGGTGCAAAACTTGTGTTCATGTACGTGCATTGTGGGGATTTAAGAGAAGCGAGGCGGGTTTTCGATGAATTATCGAATGCGAAAGTGTTTCTATGGAACCTTTTAATCAATGAGTATGCGAAGATTCGTAATTTTAGAGAAGGTGTGTACTTATTTGGGAAGATGCAGGAGTTGGGTATTCATCCGAATTCGTATACGTTTTCTTGTATTTTGAAGTGTTTTGCTGCTCTTGGGTGTGTTAAGGAAGGTGAGTGGGTTCATGGGTATGTGTGGAAACTGGGTTTTAGCTCTGATAATACTGTGGTGAATTCTCTGATGGCTTTCTATTTCAAGAATAGAAGAGTTGAAAGTGCACGGAAGGTGTTTGATGAATTGCGTGACAGAGATGTGATATCGTGGAATTCGATGATTAGTGCGTATGTGTCGAATGGTGCTGCGGAGAAGGGAGTGGAGGTTTTCAGGCAGATGTTTTGTTCTGGGATTGATGTGGACTTGGCTACGATTATCAATGTTCTAATGGCGTGTTCGGACTGTGGAGATCTTGCATTGGGTAGGGTGGTTCATGCTTATGCGATAAAAGCTGGTTTCGACATGGATGTTATGTTGTGTAATAATGTTCTAGATATGTATTCAAAGTGTGGCGATTTGAGTGATGCAGTTCGAGTTTTTGAGAAGATGGGTCAAAGAAGTGTTGTGTCGTGGACTTCGATGATAGCAGGTTATGTTCGTGAAGGTCTTTCGGACAAGGCAATTGAGTTGTTTTGTGAAATGGAAGAGAATGGCGTTAGCCCAGATGGTTATACAATCACAAGCATACTTCATGCATGTGCTTGTAGTGGCTCGTTGGAAAAAGGCAAGGATACACACAAGTATATTAGGGAACATGGCATGGACTCGAGTTTGTTTGTCTGTAATTCGCTCATGGATATGTATGCAAAATGTGGAAGCATGGAAGACGCTGACTCAGTTTTTTCTCATATGCTTAGAAAGGACATTGTGTCATGGAATACCATGATCGGAGGTTACTCCAAAAACTGTCTTCCAAATGAAACTCTTGAACTCTTTTCTGAGATGCAACAGAAATTTAAACCTGACAGCATGACAATTGCTAGTGTCCTTCCCGCTTGTGCAAGCCTAGCAGCTCTAGACAGAGGTCAAGAGATCCATGGTTATTTACTGAGAAATGGATACTTCTTGGATCGATATGTTGCCAATGCACTTGTTGACATGTATGTCAAGTGCGGGGTACTAGTTCTTGCTCAGATACTGTTTGATATGATTCCGGTGAAGGATCTGATCTCTTGGACTGTGATAATTGCTGGTTATGGGATGCATGGATTTGGAAGGGAAGCTATTGCTGCTTTTAATGAGATGAAAAAGGCTGGAATTGAACCGGACAGCATTTCCTTCATCTCTATACTTTATGCTTGCAGTCATTCTGGATTAGTTCAGGAAGGATGGAGATTCTTTGATATTATGAGAAATGATTACAAAATCGAGCCCATGTTGGAGCATTATGCTTGTATGGTAGATCTTCTTGCTCGTACTGGGAATCTAACCAAGGCATATAAATTTATTAACATGATGCCAATTGAGCCAGATGCCACAGTCTGGGGTTCCTTGCTCTGTGGTTGTAGGATTCACCATGATGTGAAACTAGCAGAGAAAGTTGCAGAGCATGTCTTTGAACTAGAGCCAGAAAACACTGGCTATTATATACTTCTAGCAAATATTTATGCAGAGGCAGAAAAGTGGGAAGAGGTGAAGAAGTTGAGGGAGAGGATTGGTCGGCGAGGCTTGAAAAAGAATCCGGGCTGTAGTTGGATAGAAATCAAGGGAAAAGTTAATATCTTTGTTGCAGGAGACACTTCACACCCAGAGGCCATGAAGATAGAGTCCCTAGTGAAGAAGTTTAGATTGAGGATGAAGGAAGATGGCTATAATCCTAAAATGCAGTACGCTTTGATTAATGCAGATGAGGTGGAAAAAGAGGTGGCTCTCTGTGGGCATAGTGAGAAGTTAGCCATAGCATTTGGGATACTGAACTTGCCACCCGGAAAAACCATACGGGTGACCAAGAATCTACGAGCCTGCGGTGACTGCCATGAGATGGCCAAGTTCATATCCAAGACATCTAGGAGGGAAATTGTTTTGAGAGATTCTAATCGCTTTCATCATATGAAGGATGGAAATTGTTCTTGTAGGGGCTTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090698 GO:0097159 GO:0099402 GO:1900865 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

879

Amino Acids

98.69

Weight (kDa)

6.65

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	170 - 216	2.1e-10	PPR repeat family
PPR_2	PF13041	269 - 309	6.1e-07	PPR repeat family
PPR	PF01535	272 - 302	1.7e-06	PPR repeat
PPR_2	PF13041	371 - 418	9.1e-15	PPR repeat family
PPR	PF01535	373 - 403	5.7e-10	PPR repeat
PPR_2	PF13041	471 - 518	8.4e-09	PPR repeat family
PPR	PF01535	474 - 502	1.2e-06	PPR repeat
PPR_2	PF13041	572 - 619	2e-09	PPR repeat family
PPR	PF01535	574 - 604	6.1e-06	PPR repeat
E_motif	PF20431	689 - 751	1.8e-20	E motif
DYW_deaminase	PF14432	787 - 879	1.7e-37	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18750
fragaria_vesca	FvH4_3g36560 FvH4_3g36640
malus_domestica	MD10G1276800.v1.1
prunus_persica	Prupe.4G065400_v2.0.a1
pyrus_communis	pycom10g23110
rosa_chinensis	RchiOBHm_Chr5g0011421
rosa_laevigata	RLG00000031832
rosa_multiflora	Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii	Rroxscaffold_1G00065030
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083800 Rh5CG097300
rosa_wichuraiana	Rw5G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1655
Acc36I	ACCTGC	1 cut(s)	1130
AccB7I	CCANNNNNTGG	2 cut(s)	2034, 2533
AccI	GTMKAC	1 cut(s)	617
AccII	CGCG	2 cut(s)	159, 171
AciI	CCGC	9 cut(s)	183, 215, 269, 285, 478, 860, 1545, 1665, 2517
AclWI	GGATC	3 cut(s)	1579, 1629, 1722
AcoI	YGGCCR	1 cut(s)	2535
AcsI	RAATTY	7 cut(s)	142, 164, 610, 730, 823, 1505, 1994
AfaI	GTAC	5 cut(s)	446, 572, 1671, 1969, 2381
AfiI	CCNNNNNNNGG	4 cut(s)	37, 204, 2034, 2533
AflIII	ACRYGT	1 cut(s)	1650
AhdI	GACNNNNNGTC	1 cut(s)	1420
AhlI	ACTAGT	1 cut(s)	1672
AluBI	AGCT	6 cut(s)	297, 337, 711, 1004, 1565, 1775
AluI	AGCT	6 cut(s)	297, 337, 711, 1004, 1565, 1775
Alw21I	GWGCWC	2 cut(s)	339, 778
Alw26I	GTCTC	4 cut(s)	46, 178, 360, 2280
Alw44I	GTGCAC	1 cut(s)	774
AlwI	GGATC	3 cut(s)	1579, 1629, 1722
AlwNI	CAGNNNCTG	1 cut(s)	1690
Ama87I	CYCGRG	1 cut(s)	1318
AoxI	GGCC	2 cut(s)	2304, 2535
ApaLI	GTGCAC	1 cut(s)	774
ApeKI	GCWGC	4 cut(s)	647, 857, 1562, 1781
ApoI	RAATTY	7 cut(s)	142, 164, 610, 730, 823, 1505, 1994
ArsI	GACNNNNNNTTYG	2 cut(s)	156, 188
AseI	ATTAAT	1 cut(s)	2391
Asp700I	GAANNNNTTC	1 cut(s)	2617
AspLEI	GCGC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	2235, 2478
AsuHPI	GGTGA	9 cut(s)	15, 325, 683, 739, 1720, 2057, 2197, 2506, 2531
AvaI	CYCGRG	1 cut(s)	1318
BaeGI	GKGCMC	1 cut(s)	778
BalI	TGGCCA	1 cut(s)	2537
BanII	GRGCYC	2 cut(s)	339, 1926
BbsI	GAAGAC	2 cut(s)	1383, 1454
Bbv12I	GWGCWC	2 cut(s)	339, 778
BbvI	GCAGC	4 cut(s)	634, 844, 1574, 1768
BccI	CCATC	8 cut(s)	407, 733, 1093, 1211, 1875, 2351, 2527, 2603
BciVI	GTATCC	3 cut(s)	1276, 1604, 2454
BcnI	CCSGG	2 cut(s)	2235, 2478
BcoDI	GTCTC	4 cut(s)	46, 178, 360, 2280
BcuI	ACTAGT	1 cut(s)	1672
BfmI	CTRYAG	1 cut(s)	2239
BfuAI	ACCTGC	1 cut(s)	1130
BfuI	GTATCC	3 cut(s)	1276, 1604, 2454
BglII	AGATCT	2 cut(s)	961, 1954
BisI	GCNGC	4 cut(s)	648, 858, 1563, 1782
BlsI	GCNGC	4 cut(s)	649, 859, 1564, 1783
Bme1390I	CCNGG	2 cut(s)	2235, 2478
BmeRI	GACNNNNNGTC	1 cut(s)	1420
BmeT110I	CYCGRG	1 cut(s)	1318
BmiI	GGNNCC	3 cut(s)	196, 521, 2041
BmrFI	CCNGG	2 cut(s)	2235, 2478
BmrI	ACTGGG	2 cut(s)	710, 1980
BmsI	GCATC	6 cut(s)	576, 1066, 1485, 1743, 1998, 2014
BmuI	ACTGGG	2 cut(s)	710, 1980
BoxI	GACNNNNGTC	1 cut(s)	1575
BpiI	GAAGAC	2 cut(s)	1383, 1454
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	2235, 2478
Bsa29I	ATCGAT	1 cut(s)	1624
BsaAI	YACGTR	1 cut(s)	448
BsaBI	GATNNNNATC	2 cut(s)	2252, 2586
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	397, 1588, 1983
BsaWI	WCCGGW	3 cut(s)	204, 1705, 1816
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 861, 891
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 204, 2034, 2533
Bse1I	ACTGG	4 cut(s)	31, 705, 1975, 2134
Bse8I	GATNNNNATC	2 cut(s)	2252, 2586
BseCI	ATCGAT	1 cut(s)	1624
BseDI	CCNNGG	3 cut(s)	397, 1588, 1983
BseGI	GGATG	6 cut(s)	604, 1024, 1758, 1886, 2352, 2614
BseJI	GATNNNNATC	2 cut(s)	2252, 2586
BseLI	CCNNNNNNNGG	4 cut(s)	37, 204, 2034, 2533
BseMII	CTCAG	4 cut(s)	1401, 1482, 1592, 1697
BseNI	ACTGG	4 cut(s)	31, 705, 1975, 2134
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	4 cut(s)	634, 844, 1574, 1768
Bsh1236I	CGCG	2 cut(s)	159, 171
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	2306, 2537
BshVI	ATCGAT	1 cut(s)	1624
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	339, 778
BsiHKCI	CYCGRG	1 cut(s)	1318
BsiSI	CCGG	7 cut(s)	192, 205, 345, 1706, 1817, 2234, 2478
BslFI	GGGAC	1 cut(s)	2305
BslI	CCNNNNNNNGG	4 cut(s)	37, 204, 2034, 2533
BsmAI	GTCTC	4 cut(s)	46, 178, 360, 2280
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	2305
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	2306, 2537
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	1318
Bsp1286I	GDGCHC	3 cut(s)	339, 778, 1926
Bsp143I	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
Bsp19I	CCATGG	2 cut(s)	397, 1588
BspACI	CCGC	9 cut(s)	183, 215, 269, 285, 478, 860, 1545, 1665, 2517
BspANI	GGCC	2 cut(s)	2306, 2537
BspCNI	CTCAG	4 cut(s)	1400, 1483, 1593, 1696
BspDI	ATCGAT	1 cut(s)	1624
BspFNI	CGCG	2 cut(s)	159, 171
BspLI	GGNNCC	3 cut(s)	196, 521, 2041
BspMI	ACCTGC	1 cut(s)	1130
BspPI	GGATC	3 cut(s)	1579, 1629, 1722
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	31, 705, 1975, 2134
BssECI	CCNNGG	3 cut(s)	397, 1588, 1983
BssMI	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
BssNAI	GTATAC	1 cut(s)	618
BssT1I	CCWWGG	3 cut(s)	397, 1588, 1983
Bst1107I	GTATAC	1 cut(s)	618
Bst4CI	ACNGT	6 cut(s)	724, 956, 1460, 1692, 1732, 2032
Bst6I	CTCTTC	4 cut(s)	365, 757, 1191, 2175
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	1555, 1852, 2515
BstDEI	CTNAG	6 cut(s)	351, 1387, 1406, 1491, 1601, 1683
BstDSI	CCRYGG	2 cut(s)	397, 1588
BstEII	GGTNACC	1 cut(s)	2494
BstF5I	GGATG	6 cut(s)	604, 1024, 1758, 1886, 2352, 2614
BstFNI	CGCG	2 cut(s)	159, 171
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	8 cut(s)	304, 964, 1440, 1587, 1624, 1717, 1722, 1957
BstMAI	GTCTC	4 cut(s)	46, 178, 360, 2280
BstMBI	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 1001, 1559, 1781, 2017, 2523
BstNSI	RCATGY	3 cut(s)	1251, 1654, 2105
BstPAI	GACNNNNGTC	1 cut(s)	1575
BstPI	GGTNACC	1 cut(s)	2494
BstSCI	CCNGG	2 cut(s)	2233, 2476
BstSFI	CTRYAG	1 cut(s)	2239
BstSLI	GKGCMC	1 cut(s)	778
BstUI	CGCG	2 cut(s)	159, 171
BstV1I	GCAGC	4 cut(s)	634, 844, 1574, 1768
BstV2I	GAAGAC	2 cut(s)	1383, 1454
BstX2I	RGATCY	4 cut(s)	961, 1584, 1714, 1954
BstYI	RGATCY	4 cut(s)	961, 1584, 1714, 1954
BstZ17I	GTATAC	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	1624
BsuI	GTATCC	3 cut(s)	1276, 1604, 2454
BsuRI	GGCC	2 cut(s)	2306, 2537
BsuTUI	ATCGAT	1 cut(s)	1624
BtgI	CCRYGG	2 cut(s)	397, 1588
BtsCI	GGATG	6 cut(s)	604, 1024, 1758, 1886, 2352, 2614
BtsIMutI	CAGTG	2 cut(s)	198, 2127
BveI	ACCTGC	1 cut(s)	1130
Cac8I	GCNNGC	3 cut(s)	1555, 1852, 2515
CaiI	CAGNNNCTG	1 cut(s)	1690
CfoI	GCGC	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	1624
CseI	GACGC	2 cut(s)	160, 1388
Csp6I	GTAC	5 cut(s)	445, 571, 1670, 1968, 2380
CviQI	GTAC	5 cut(s)	445, 571, 1670, 1968, 2380
DdeI	CTNAG	6 cut(s)	351, 1387, 1406, 1491, 1601, 1683
DpnI	GATC	8 cut(s)	303, 963, 1439, 1586, 1623, 1716, 1721, 1956
DpnII	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
DraI	TTTAAA	1 cut(s)	1510
DrdI	GACNNNNNNGTC	1 cut(s)	1655
DriI	GACNNNNNGTC	1 cut(s)	1420
DseDI	GACNNNNNNGTC	1 cut(s)	1655
EaeI	YGGCCR	1 cut(s)	2535
Eam1104I	CTCTTC	4 cut(s)	365, 757, 1191, 2175
Eam1105I	GACNNNNNGTC	1 cut(s)	1420
EarI	CTCTTC	4 cut(s)	365, 757, 1191, 2175
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	3 cut(s)	397, 1588, 1983
Eco24I	GRGCYC	2 cut(s)	339, 1926
Eco31I	GGTCTC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	816
Eco53kI	GAGCTC	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	1318
Eco91I	GGTNACC	1 cut(s)	2494
EcoICRI	GAGCTC	1 cut(s)	337
EcoO65I	GGTNACC	1 cut(s)	2494
EcoRI	GAATTC	3 cut(s)	610, 730, 823
EcoRV	GATATC	1 cut(s)	816
EcoT14I	CCWWGG	3 cut(s)	397, 1588, 1983
EcoT22I	ATGCAT	2 cut(s)	1249, 1758
EcoT38I	GRGCYC	2 cut(s)	339, 1926
ErhI	CCWWGG	3 cut(s)	397, 1588, 1983
Esp3I	CGTCTC	1 cut(s)	178
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	2305
FauI	CCCGC	4 cut(s)	278, 471, 1552, 1658
FauNDI	CATATG	2 cut(s)	1401, 2601
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	648, 858, 1563, 1782
FokI	GGATG	6 cut(s)	591, 1031, 1765, 1893, 2359, 2621
FriOI	GRGCYC	2 cut(s)	339, 1926
Fsp4HI	GCNGC	4 cut(s)	648, 858, 1563, 1782
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	648, 858, 1563, 1782
HaeIII	GGCC	2 cut(s)	2306, 2537
HapII	CCGG	7 cut(s)	192, 205, 345, 1706, 1817, 2234, 2478
HgaI	GACGC	2 cut(s)	160, 1388
HhaI	GCGC	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	1 cut(s)	1648
HindII	GTYRAC	1 cut(s)	1648
HpaII	CCGG	7 cut(s)	192, 205, 345, 1706, 1817, 2234, 2478
HphI	GGTGA	9 cut(s)	15, 325, 683, 739, 1720, 2057, 2197, 2506, 2531
Hpy166II	GTNNAC	7 cut(s)	379, 571, 618, 776, 913, 1125, 1648
Hpy188III	TCNNGA	9 cut(s)	305, 754, 1043, 1151, 1478, 1568, 1580, 1863, 1874
Hpy8I	GTNNAC	7 cut(s)	379, 571, 618, 776, 913, 1125, 1648
HpyCH4III	ACNGT	6 cut(s)	724, 956, 1460, 1692, 1732, 2032
HpyCH4IV	ACGT	2 cut(s)	447, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 1001, 1559, 1781, 2017, 2523
HpyF3I	CTNAG	6 cut(s)	351, 1387, 1406, 1491, 1601, 1683
HpySE526I	ACGT	2 cut(s)	447, 620
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
LmnI	GCTCC	4 cut(s)	302, 329, 334, 1933
Lsp1109I	GCAGC	4 cut(s)	634, 844, 1574, 1768
LweI	GCATC	6 cut(s)	576, 1066, 1485, 1743, 1998, 2014
MaeII	ACGT	2 cut(s)	447, 620
MaeIII	GTNAC	6 cut(s)	313, 392, 800, 1445, 2494, 2519
MalI	GATC	8 cut(s)	303, 963, 1439, 1586, 1623, 1716, 1721, 1956
MboI	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
MfeI	CAATTG	3 cut(s)	1173, 1527, 2013
MflI	RGATCY	4 cut(s)	961, 1584, 1714, 1954
MhlI	GDGCHC	3 cut(s)	339, 778, 1926
MlsI	TGGCCA	1 cut(s)	2537
MluNI	TGGCCA	1 cut(s)	2537
MlyI	GAGTC	3 cut(s)	1310, 1379, 2327
MmeI	TCCRAC	4 cut(s)	312, 1248, 1911, 2225
Mox20I	TGGCCA	1 cut(s)	2537
Mph1103I	ATGCAT	2 cut(s)	1249, 1758
MroXI	GAANNNNTTC	1 cut(s)	2617
MscI	TGGCCA	1 cut(s)	2537
MseI	TTAA	8 cut(s)	464, 527, 663, 1509, 1788, 2001, 2268, 2391
MslI	CAYNNNNRTG	7 cut(s)	446, 687, 990, 1248, 1349, 2070, 2492
Msp20I	TGGCCA	1 cut(s)	2537
MspI	CCGG	7 cut(s)	192, 205, 345, 1706, 1817, 2234, 2478
MspR9I	CCNGG	2 cut(s)	2235, 2478
MunI	CAATTG	3 cut(s)	1173, 1527, 2013
Mva1269I	GAATGC	1 cut(s)	505
MvnI	CGCG	2 cut(s)	159, 171
MwoI	GCNNNNNNNGC	6 cut(s)	88, 1001, 1559, 1781, 2017, 2523
NciI	CCSGG	2 cut(s)	2235, 2478
NcoI	CCATGG	2 cut(s)	397, 1588
NdeI	CATATG	2 cut(s)	1401, 2601
NdeII	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
NlaIV	GGNNCC	3 cut(s)	196, 521, 2041
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	5 cut(s)	313, 392, 800, 2494, 2519
NsiI	ATGCAT	2 cut(s)	1249, 1758
NspI	RCATGY	3 cut(s)	1251, 1654, 2105
PaeR7I	CTCGAG	1 cut(s)	1318
PciI	ACATGT	1 cut(s)	1650
PcsI	WCGNNNNNNNCGW	2 cut(s)	824, 1127
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	2617
PfeI	GAWTC	8 cut(s)	547, 1702, 1887, 1975, 2062, 2230, 2503, 2582
PflMI	CCANNNNNTGG	2 cut(s)	2034, 2533
PkrI	GCNGC	4 cut(s)	649, 859, 1564, 1783
PleI	GAGTC	3 cut(s)	1310, 1379, 2326
PpsI	GAGTC	3 cut(s)	1310, 1379, 2326
Ppu21I	YACGTR	1 cut(s)	448
PscI	ACATGT	1 cut(s)	1650
PshAI	GACNNNNGTC	1 cut(s)	1575
PshBI	ATTAAT	1 cut(s)	2391
Psp124BI	GAGCTC	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	2494
PspN4I	GGNNCC	3 cut(s)	196, 521, 2041
PspXI	VCTCGAGB	1 cut(s)	1318
PstNI	CAGNNNCTG	1 cut(s)	1690
PsuI	RGATCY	4 cut(s)	961, 1584, 1714, 1954
RsaI	GTAC	5 cut(s)	446, 572, 1671, 1969, 2381
RsaNI	GTAC	5 cut(s)	445, 571, 1670, 1968, 2380
RseI	CAYNNNNRTG	7 cut(s)	446, 687, 990, 1248, 1349, 2070, 2492
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	8 cut(s)	464, 527, 663, 1509, 1788, 2001, 2268, 2391
SatI	GCNGC	4 cut(s)	648, 858, 1563, 1782
Sau3AI	GATC	8 cut(s)	301, 961, 1437, 1584, 1621, 1714, 1719, 1954
SchI	GAGTC	3 cut(s)	1310, 1379, 2327
ScrFI	CCNGG	2 cut(s)	2235, 2478
SduI	GDGCHC	3 cut(s)	339, 778, 1926
SfaNI	GCATC	6 cut(s)	576, 1066, 1485, 1743, 1998, 2014
SfcI	CTRYAG	1 cut(s)	2239
Sfr274I	CTCGAG	1 cut(s)	1318
SlaI	CTCGAG	1 cut(s)	1318
SmiMI	CAYNNNNRTG	7 cut(s)	446, 687, 990, 1248, 1349, 2070, 2492
SmlI	CTYRAG	2 cut(s)	305, 1318
SmoI	CTYRAG	2 cut(s)	305, 1318
SpeI	ACTAGT	1 cut(s)	1672
SsiI	CCGC	9 cut(s)	183, 215, 269, 285, 478, 860, 1545, 1665, 2517
SspI	AATATT	1 cut(s)	2155
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	2233, 2476
StyI	CCWWGG	3 cut(s)	397, 1588, 1983
TaaI	ACNGT	6 cut(s)	724, 956, 1460, 1692, 1732, 2032
TaiI	ACGT	2 cut(s)	450, 623
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	8 cut(s)	547, 1702, 1887, 1975, 2062, 2230, 2503, 2582
Tru1I	TTAA	8 cut(s)	464, 527, 663, 1509, 1788, 2001, 2268, 2391
Tru9I	TTAA	8 cut(s)	464, 527, 663, 1509, 1788, 2001, 2268, 2391
TscAI	CASTG	2 cut(s)	205, 2134
TseFI	GTSAC	5 cut(s)	313, 392, 800, 2494, 2519
TseI	GCWGC	4 cut(s)	647, 857, 1562, 1781
Tsp45I	GTSAC	5 cut(s)	313, 392, 800, 2494, 2519
TspGWI	ACGGA	2 cut(s)	316, 793
TspRI	CASTG	2 cut(s)	205, 2134
Van91I	CCANNNNNTGG	2 cut(s)	2034, 2533
VneI	GTGCAC	1 cut(s)	774
VspI	ATTAAT	1 cut(s)	2391
XapI	RAATTY	7 cut(s)	142, 164, 610, 730, 823, 1505, 1994
XbaI	TCTAGA	2 cut(s)	1042, 1567
XceI	RCATGY	3 cut(s)	1251, 1654, 2105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	1318
XmiI	GTMKAC	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	2617
Zsp2I	ATGCAT	2 cut(s)	1249, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.