Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016045

Physical Location & Seq

Genomic Coordinates Forward (+)

31314717 .. 31316150

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGGTCGAAGAAGTGTTTTGTCGTGGACTTCAATGATAGCCGGTTATGTTAGAGAAGCTCTTTCGGATAAGGCAATTGAGTTGTTTTGTGAAATGGAAACGGATGGTGTTATCCCAGATGTTTATACAATCACAAGCATACTTCATGCATGTGCTTGTAGCGGCTCATTGGAAAAGGGTAAGGATATACACAAGTATATTAGGGAACATGATATGGACTCGAGTTTGTTTGTCTGTAATTCGCTCATGGATATGTATGCAAAATGTGGAAGCATGGAAGATGCTGACTCAGTTTTTTCTCATATGCCTATGAAGGACATCGTGTCATGGAATACCATGATCGGAGGTTACTCCAAGAACTGCCTTCCAAACGAAGCTCTTGAACTCTTTTCTGATATGCAACGGAAATTTAAACCTGACAGCATGACCCTTGCCAGTGTCCTTCCTGCTTGTGCAAGCCTAGCAGCTCTCGACAGAGGTCAAGAGATCCATGGTTATTTACTGAGACATGGATACTTTTTGGATCAATATGTTGCCAATGCACTTGTTGACATGTATGTCAAGTGCGGGGTGCTAATTCTTGCTCGGGTACTTTTTGAAATGATTCCTGTGAAAGATCTGATCTCTTATACTGTGATAATTGCTGGTTATGGGATGCATGGATTTGGAAAGGAAGCAATTGCTGCGTTCAATGAGATGACAAAGGCTGAAATTGAACCGGACAGCATTTCCTTCATCTCTATACTTTATGCTTGCAGTCATTCTGGATTGGTTCAGGAAGGATGGAGATTCTTTGATATTATGAGAAATGATTACAAAATCGAGCCCATGTTGGAGCATTATGCTTGTATGGTGGATCTTCTTGCTCGGACTGGGAATCTAACCAAGGCATATAAATTTATTAACATGATGCCAATTGAGCCAGATGCCACAGTCTGGGGTTCCTTGCTCTGTGGTTGTAGGATTCACCATGATGTGAAACTAGCAGAGAAAGTTGCAGAGCATGTCTTTGAACTAGAGCCAGAAAACACTGGCTATTATATACTTCTAGCAAATATTTATGCAGAGGCAGAAAAGTGGGAAGAGGTGAAGAAGTTGAGGGAGAGGATTGGTCGGCGAAGCTTGAAAAAGAATCCGGGCTGTAGTTGGATAGAGATCAAGGGAAAAGTTAATATCTTTGTTGCAGGAGGCACTTCACACCCAGATGCCATGAAGATAGAGTCCCTAGTGAAGAAATTTAGATCGAGGATGAAGGAAGATGGCTACAATCCTAAAATGCAGTACGCTTTGATTAATGCAGATGAGGTGGAGAAAGAAGTGGCTCTCTGTGCGCATAGTGAGAAATTAGCCATAGCATTCGGGATACTGAACACGCCACCCAGAAAAAAACATACGAGTGACCAAGAATCTACGAGTCTGTGGCGACTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090698 GO:0097159 GO:0099402 GO:1900865 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

478

Amino Acids

53.83

Weight (kDa)

5.96

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 52	4.6e-12	PPR repeat family
PPR	PF01535	8 - 37	7.4e-07	PPR repeat
PPR_3	PF13812	28 - 87	6.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	105 - 152	1e-10	PPR repeat family
PPR	PF01535	108 - 136	2e-08	PPR repeat
PPR_2	PF13041	206 - 253	4.1e-08	PPR repeat family
E_motif	PF20431	323 - 385	4.7e-20	E motif
DYW_deaminase	PF14432	421 - 461	4.8e-08	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18750
fragaria_vesca	FvH4_3g36560 FvH4_3g36640
malus_domestica	MD10G1276800.v1.1
prunus_persica	Prupe.4G065400_v2.0.a1
pyrus_communis	pycom10g23110
rosa_chinensis	RchiOBHm_Chr5g0011421
rosa_laevigata	RLG00000031832
rosa_multiflora	Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii	Rroxscaffold_1G00065030
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083800 Rh5CG097300
rosa_wichuraiana	Rw5G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
Acc16I	TGCGCA	1 cut(s)	1332
AccB7I	CCANNNNNTGG	1 cut(s)	936
AciI	CCGC	2 cut(s)	162, 567
AclWI	GGATC	3 cut(s)	481, 531, 864
AcsI	RAATTY	3 cut(s)	407, 896, 1235
AfaI	GTAC	2 cut(s)	591, 1283
AfiI	CCNNNNNNNGG	1 cut(s)	936
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	7 cut(s)	33, 383, 599, 691, 716, 1013, 1126
AhdI	GACNNNNNGTC	1 cut(s)	322
AluBI	AGCT	4 cut(s)	59, 377, 467, 1122
AluI	AGCT	4 cut(s)	59, 377, 467, 1122
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	3 cut(s)	481, 531, 864
Ama87I	CYCGRG	2 cut(s)	220, 585
ApeKI	GCWGC	2 cut(s)	464, 683
ApoI	RAATTY	3 cut(s)	407, 896, 1235
AseI	ATTAAT	1 cut(s)	1293
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	1333
AsuC2I	CCSGG	1 cut(s)	1137
AsuHPI	GGTGA	2 cut(s)	959, 1099
AvaI	CYCGRG	2 cut(s)	220, 585
BanII	GRGCYC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	476, 670
BccI	CCATC	3 cut(s)	98, 777, 1253
BciVI	GTATCC	2 cut(s)	506, 1356
BcnI	CCSGG	1 cut(s)	1137
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	5 cut(s)	461, 983, 1016, 1049, 1226
BfmI	CTRYAG	1 cut(s)	1141
BfuI	GTATCC	2 cut(s)	506, 1356
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	3 cut(s)	163, 465, 684
BlsI	GCNGC	3 cut(s)	164, 466, 685
Bme1390I	CCNGG	1 cut(s)	1137
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	2 cut(s)	220, 585
BmiI	GGNNCC	1 cut(s)	943
BmrFI	CCNGG	1 cut(s)	1137
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	5 cut(s)	271, 645, 900, 916, 1195
BmuI	ACTGGG	1 cut(s)	882
BoxI	GACNNNNGTC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	1137
BsaBI	GATNNNNATC	1 cut(s)	1154
BsaJI	CCNNGG	2 cut(s)	490, 885
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	936
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	435, 877, 1036
Bse8I	GATNNNNATC	1 cut(s)	1154
BseDI	CCNNGG	2 cut(s)	490, 885
BseGI	GGATG	4 cut(s)	109, 660, 788, 1254
BseJI	GATNNNNATC	1 cut(s)	1154
BseLI	CCNNNNNNNGG	1 cut(s)	936
BseMII	CTCAG	2 cut(s)	303, 494
BseNI	ACTGG	3 cut(s)	435, 877, 1036
BseXI	GCAGC	2 cut(s)	476, 670
BsiHKCI	CYCGRG	2 cut(s)	220, 585
BsiSI	CCGG	3 cut(s)	42, 719, 1136
BslFI	GGGAC	1 cut(s)	1207
BslI	CCNNNNNNNGG	1 cut(s)	936
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	1207
BsmI	GAATGC	1 cut(s)	1355
BsoBI	CYCGRG	2 cut(s)	220, 585
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	2 cut(s)	162, 567
BspCNI	CTCAG	2 cut(s)	302, 495
BspLI	GGNNCC	1 cut(s)	943
BspPI	GGATC	3 cut(s)	481, 531, 864
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	435, 877, 1036
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	490, 885
BssMI	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
BssT1I	CCWWGG	2 cut(s)	490, 885
Bst4CI	ACNGT	2 cut(s)	634, 934
Bst6I	CTCTTC	1 cut(s)	1077
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	2 cut(s)	457, 754
BstDEI	CTNAG	2 cut(s)	289, 503
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	4 cut(s)	109, 660, 788, 1254
BstHHI	GCGC	1 cut(s)	1333
BstKTI	GATC	8 cut(s)	342, 489, 526, 619, 624, 859, 1158, 1244
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 683, 919, 1328
BstNSI	RCATGY	3 cut(s)	153, 556, 1007
BstPAI	GACNNNNGTC	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	1135
BstSFI	CTRYAG	1 cut(s)	1141
BstV1I	GCAGC	2 cut(s)	476, 670
BstX2I	RGATCY	3 cut(s)	486, 616, 856
BstYI	RGATCY	3 cut(s)	486, 616, 856
BsuI	GTATCC	2 cut(s)	506, 1356
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	109, 660, 788, 1254
BtsIMutI	CAGTG	2 cut(s)	442, 1029
Cac8I	GCNNGC	2 cut(s)	457, 754
CfoI	GCGC	1 cut(s)	1333
Cfr10I	RCCGGY	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	590, 1282
CviQI	GTAC	2 cut(s)	590, 1282
DdeI	CTNAG	2 cut(s)	289, 503
DpnI	GATC	8 cut(s)	341, 488, 525, 618, 623, 858, 1157, 1243
DpnII	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
DraI	TTTAAA	1 cut(s)	412
DrdI	GACNNNNNNGTC	1 cut(s)	557
DriI	GACNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	1077
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	1077
Eco130I	CCWWGG	2 cut(s)	490, 885
Eco24I	GRGCYC	1 cut(s)	828
Eco88I	CYCGRG	2 cut(s)	220, 585
EcoT14I	CCWWGG	2 cut(s)	490, 885
EcoT22I	ATGCAT	2 cut(s)	151, 660
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	490, 885
FaqI	GGGAC	1 cut(s)	1207
FauI	CCCGC	1 cut(s)	560
FauNDI	CATATG	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	163, 465, 684
FokI	GGATG	4 cut(s)	116, 667, 795, 1261
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	3 cut(s)	163, 465, 684
FspAI	RTGCGCAY	1 cut(s)	1332
FspBI	CTAG	5 cut(s)	461, 983, 1016, 1049, 1226
FspI	TGCGCA	1 cut(s)	1332
GlaI	GCGC	1 cut(s)	1332
GluI	GCNGC	3 cut(s)	163, 465, 684
HapII	CCGG	3 cut(s)	42, 719, 1136
HhaI	GCGC	1 cut(s)	1333
Hin6I	GCGC	1 cut(s)	1331
HinP1I	GCGC	1 cut(s)	1331
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	1120
HpaII	CCGG	3 cut(s)	42, 719, 1136
HphI	GGTGA	2 cut(s)	959, 1099
Hpy166II	GTNNAC	2 cut(s)	27, 550
Hpy188I	TCNGA	5 cut(s)	67, 344, 394, 621, 870
Hpy188III	TCNNGA	6 cut(s)	380, 470, 482, 765, 776, 1360
Hpy8I	GTNNAC	2 cut(s)	27, 550
HpyAV	CCTTC	6 cut(s)	307, 374, 452, 742, 773, 1246
HpyCH4III	ACNGT	2 cut(s)	634, 934
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 683, 919, 1328
HpyF3I	CTNAG	2 cut(s)	289, 503
HspAI	GCGC	1 cut(s)	1331
Kzo9I	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	2 cut(s)	476, 670
LweI	GCATC	5 cut(s)	271, 645, 900, 916, 1195
MaeI	CTAG	5 cut(s)	461, 983, 1016, 1049, 1226
MaeIII	GTNAC	2 cut(s)	347, 1397
MalI	GATC	8 cut(s)	341, 488, 525, 618, 623, 858, 1157, 1243
MboI	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
MboII	GAAGA	8 cut(s)	21, 290, 851, 1094, 1102, 1225, 1243, 1268
MfeI	CAATTG	3 cut(s)	75, 678, 915
MflI	RGATCY	3 cut(s)	486, 616, 856
MhlI	GDGCHC	1 cut(s)	828
MlyI	GAGTC	4 cut(s)	212, 281, 1229, 1423
MmeI	TCCRAC	2 cut(s)	813, 1127
MnlI	CCTC	9 cut(s)	338, 470, 1060, 1078, 1092, 1098, 1181, 1239, 1297
Mph1103I	ATGCAT	2 cut(s)	151, 660
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	4 cut(s)	411, 903, 1170, 1293
MslI	CAYNNNNRTG	5 cut(s)	150, 251, 972, 1203, 1395
MspI	CCGG	3 cut(s)	42, 719, 1136
MspR9I	CCNGG	1 cut(s)	1137
MunI	CAATTG	3 cut(s)	75, 678, 915
Mva1269I	GAATGC	1 cut(s)	1355
MwoI	GCNNNNNNNGC	4 cut(s)	461, 683, 919, 1328
NciI	CCSGG	1 cut(s)	1137
NcoI	CCATGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
NlaIV	GGNNCC	1 cut(s)	943
NmuCI	GTSAC	1 cut(s)	1397
NsbI	TGCGCA	1 cut(s)	1332
NsiI	ATGCAT	2 cut(s)	151, 660
NspI	RCATGY	3 cut(s)	153, 556, 1007
PaeR7I	CTCGAG	1 cut(s)	220
PciI	ACATGT	1 cut(s)	552
PctI	GAATGC	1 cut(s)	1355
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	6 cut(s)	604, 789, 877, 964, 1132, 1406
PflMI	CCANNNNNTGG	1 cut(s)	936
PkrI	GCNGC	3 cut(s)	164, 466, 685
PleI	GAGTC	4 cut(s)	212, 281, 1228, 1422
PpsI	GAGTC	4 cut(s)	212, 281, 1228, 1422
PscI	ACATGT	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	1293
PspN4I	GGNNCC	1 cut(s)	943
PspXI	VCTCGAGB	1 cut(s)	220
PsuI	RGATCY	3 cut(s)	486, 616, 856
RsaI	GTAC	2 cut(s)	591, 1283
RsaNI	GTAC	2 cut(s)	590, 1282
RseI	CAYNNNNRTG	5 cut(s)	150, 251, 972, 1203, 1395
SaqAI	TTAA	4 cut(s)	411, 903, 1170, 1293
SatI	GCNGC	3 cut(s)	163, 465, 684
Sau3AI	GATC	8 cut(s)	339, 486, 523, 616, 621, 856, 1155, 1241
SchI	GAGTC	4 cut(s)	212, 281, 1229, 1423
ScrFI	CCNGG	1 cut(s)	1137
SduI	GDGCHC	1 cut(s)	828
SetI	ASST	9 cut(s)	61, 349, 379, 418, 469, 481, 1089, 1124, 1308
SfaNI	GCATC	5 cut(s)	271, 645, 900, 916, 1195
SfcI	CTRYAG	1 cut(s)	1141
Sfr274I	CTCGAG	1 cut(s)	220
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	5 cut(s)	150, 251, 972, 1203, 1395
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	2 cut(s)	162, 567
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	5 cut(s)	461, 983, 1016, 1049, 1226
StyD4I	CCNGG	1 cut(s)	1135
StyI	CCWWGG	2 cut(s)	490, 885
TaaI	ACNGT	2 cut(s)	634, 934
TaqI	TCGA	5 cut(s)	7, 221, 471, 822, 1244
TauI	GCSGC	1 cut(s)	165
TfiI	GAWTC	6 cut(s)	604, 789, 877, 964, 1132, 1406
Tru1I	TTAA	4 cut(s)	411, 903, 1170, 1293
Tru9I	TTAA	4 cut(s)	411, 903, 1170, 1293
TscAI	CASTG	2 cut(s)	442, 1036
TseFI	GTSAC	1 cut(s)	1397
TseI	GCWGC	2 cut(s)	464, 683
Tsp45I	GTSAC	1 cut(s)	1397
TspDTI	ATGAA	5 cut(s)	134, 326, 724, 1226, 1265
TspGWI	ACGGA	2 cut(s)	116, 418
TspRI	CASTG	2 cut(s)	442, 1036
Van91I	CCANNNNNTGG	1 cut(s)	936
VspI	ATTAAT	1 cut(s)	1293
XapI	RAATTY	3 cut(s)	407, 896, 1235
XceI	RCATGY	3 cut(s)	153, 556, 1007
XhoI	CTCGAG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	5 cut(s)	461, 983, 1016, 1049, 1226
Zsp2I	ATGCAT	2 cut(s)	151, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.