Rroxscaffold_1G00065030

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
86823107 .. 86824858
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065030.1

Sequence Viewer

Length: 1752 bp
ATGTTTTGTTCTGGGATTGATGTGGACTTGGCTACGATTATCAATGTTCTAATGGCGTGTTCGGACTGTGGAGATCTTGCATTGGGTAGGGTGGTTCATGCTTACGCGATAAAAGCTGGTTTCAACATGGATGTTATGTTGTGTAATAATGTTCTAGATATGTATTCAAAATGTGGCGATTTGAGTGATGCAATTCGAGTTTTTGAGAAGATGGGTCAAAGAAGTGTTGTGTCATGGACTTCGATGATAGCAGGTTATGTTCGTGAAGGTCTTTCGGACAAGGCAATTGAGTTGTTTTGTGAAATGGAAGAGAATGGTGTTAGCCCAGATGGTTATACAATCACAAGCATACTTCATGCATGTGCTTGTAGTGGCTCGTTGGAAAAAGGTAAGGATATACACAAGTATATTAGGGAACATGGCATGGACTCGAGTTTGTTTGTCTGTAATTCGCTTATGGATATGTATGCAAAATGTGGAAGCATGGAAGACGCTGACTCAGTTTTTTCTCATATGCTTAGAAAGGACATTGTGTCATGGAATACCATGATCGGAGGTTACTCCAAAAACTGTCTTCCAAATGAAGCTCTTGAACTCTTTTCTGAGATGCAACAGAAATTTAAACCTGACAGCATGACAATTGCTAGTGTCCTTCCCGCTTGTGCAAGCCTAGCAGCTCTAGACAGAGGTCAAGAGATCCATGGTTATTTACTGAGAAATGGATACTTCTTGGATCGATATGTTGCCAATGCACTTGTTGACATGTATGTCAAGTGCGGGGTACTAGTTCTTGCTCGGGTACTGTTTGATATGATTCCGGTGAAGGATCTGATCTCTTGGACTGTGATAATTGCTGGTTATGGGATGCATGGATTTGGAAGGGAAGCTATTGCTGCGTTTAATGAGATGAAAAAGGCTGGAATTGAACCGGACAGCATTTCCTTCATCTCTATACTTTATGCTTGCAGTCATTCTGGATTAGTTCAGGAAGGATGGAGATTCTTTGATATTATGAGAAATGATTACAAAATCGAGCCCATGTTGGAGCATTATGCTTGTATGGTAGATCTTCTTGCTCGTACTGGGAAGCTAACCAAGGCATATAAGTTTATTAACATGATGCCAATTGAGCCAGATGCCACAGTCTGGGGTTCCTTGCTCTGTGGTTGTAGGATTCACCATGATGTGAAACTAGCAGAGAAAGTAGCAGAGCATGTCTTTGAACTAGAGCCAGAAAACACTGGCTATTATATACTTCTAGCAAATATTTATGCAGAGGCGGAAAAATGGGAAGAGGTGAAGAAGTTGAGGGAGAGGATTGGTCGGCGAGGCTTGAAAAAGAATCCGGGCTGTAGTTGGATAGAAATCAAGGGAAAAGTTAATATCTTTGTTGTGGGAGACACTTCACACCCAGAGGCCATGAAGATAGAGTCCCTAGTGAAGAAGTTTAGATTGAGGATGAAGGAAGATGGCTATAATCCTAAAATGCAGTACGCTTTGATTAATGCAGATGAGGTGGAAAAAGAGGTGGCTCTCTGTGGGCATAGTGAGAAGTTAGCCATAGCATTTGGGATACTGAACTTGCCACCCGGAAAAACCATACGGGTGACCAAGAATCTACGAGTCTGCGGTGACTGCCATGAGATGGCCAAGTTCATATCGAAGACATCTAGGAGGGAAATTGTTTTGAGAGATTCTAATCGCTTTCATCATATGAAGGATGGAAATTGTTCTTGTAGGGGCTTTTGGTAA

Protein Analysis

583

Amino Acids

65.51

Weight (kDa)

6.4

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 122 5.4e-15 PPR repeat family
PPR PF01535 77 - 107 3.5e-10 PPR repeat
PPR_3 PF13812 98 - 157 3.4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 175 - 222 2.3e-10 PPR repeat family
PPR PF01535 178 - 206 1e-08 PPR repeat
PPR_2 PF13041 276 - 323 1.2e-09 PPR repeat family
PPR PF01535 278 - 308 3.8e-06 PPR repeat
E_motif PF20431 393 - 455 1e-20 E motif
DYW_deaminase PF14432 491 - 583 1.2e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18750
fragaria_vesca FvH4_3g36560 FvH4_3g36640
malus_domestica MD10G1276800.v1.1
prunus_persica Prupe.4G065400_v2.0.a1
pyrus_communis pycom10g23110
rosa_chinensis RchiOBHm_Chr5g0011421
rosa_laevigata RLG00000031832
rosa_multiflora Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii Rroxscaffold_1G00065030
rosa_rugosa Rorug04G0456900
rosa_samantha Rh5BG083800 Rh5CG097300
rosa_wichuraiana Rw5G007710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 767
Acc36I ACCTGC 1 cut(s) 242
AccB7I CCANNNNNTGG 2 cut(s) 1146, 1645
AccII CGCG 1 cut(s) 107
AciI CCGC 4 cut(s) 657, 777, 1280, 1629
AclWI GGATC 3 cut(s) 691, 741, 834
AcoI YGGCCR 1 cut(s) 1647
AcsI RAATTY 1 cut(s) 617
AfaI GTAC 4 cut(s) 783, 801, 1081, 1493
AfiI CCNNNNNNNGG 2 cut(s) 1146, 1645
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 6 cut(s) 124, 168, 593, 926, 1223, 1336
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 1 cut(s) 784
AluBI AGCT 5 cut(s) 116, 587, 677, 887, 1090
AluI AGCT 5 cut(s) 116, 587, 677, 887, 1090
Alw26I GTCTC 1 cut(s) 1392
AlwI GGATC 3 cut(s) 691, 741, 834
Ama87I CYCGRG 2 cut(s) 430, 795
AoxI GGCC 2 cut(s) 1416, 1647
ApeKI GCWGC 2 cut(s) 674, 893
ApoI RAATTY 1 cut(s) 617
AseI ATTAAT 1 cut(s) 1503
Asp700I GAANNNNTTC 1 cut(s) 1729
AsuC2I CCSGG 2 cut(s) 1347, 1590
AsuHPI GGTGA 5 cut(s) 832, 1169, 1309, 1618, 1643
AvaI CYCGRG 2 cut(s) 430, 795
BalI TGGCCA 1 cut(s) 1649
BanII GRGCYC 1 cut(s) 1038
BbsI GAAGAC 3 cut(s) 495, 566, 1670
BbvI GCAGC 2 cut(s) 686, 880
BccI CCATC 6 cut(s) 205, 323, 987, 1463, 1639, 1715
BciVI GTATCC 2 cut(s) 716, 1566
BcnI CCSGG 2 cut(s) 1347, 1590
BcoDI GTCTC 1 cut(s) 1392
BcuI ACTAGT 1 cut(s) 784
BfmI CTRYAG 1 cut(s) 1351
BfuAI ACCTGC 1 cut(s) 242
BfuI GTATCC 2 cut(s) 716, 1566
BglII AGATCT 2 cut(s) 73, 1066
BisI GCNGC 2 cut(s) 675, 894
BlsI GCNGC 2 cut(s) 676, 895
Bme1390I CCNGG 2 cut(s) 1347, 1590
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 2 cut(s) 430, 795
BmiI GGNNCC 1 cut(s) 1153
BmrFI CCNGG 2 cut(s) 1347, 1590
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 5 cut(s) 178, 597, 855, 1110, 1126
BmuI ACTGGG 1 cut(s) 1092
BoxI GACNNNNGTC 1 cut(s) 687
BpiI GAAGAC 3 cut(s) 495, 566, 1670
BpuMI CCSGG 2 cut(s) 1347, 1590
Bsa29I ATCGAT 1 cut(s) 736
BsaBI GATNNNNATC 2 cut(s) 1364, 1698
BsaJI CCNNGG 2 cut(s) 700, 1095
BsaWI WCCGGW 2 cut(s) 817, 928
Bsc4I CCNNNNNNNGG 2 cut(s) 1146, 1645
Bse1I ACTGG 2 cut(s) 1087, 1246
Bse8I GATNNNNATC 2 cut(s) 1364, 1698
BseCI ATCGAT 1 cut(s) 736
BseDI CCNNGG 2 cut(s) 700, 1095
BseGI GGATG 5 cut(s) 136, 870, 998, 1464, 1726
BseJI GATNNNNATC 2 cut(s) 1364, 1698
BseLI CCNNNNNNNGG 2 cut(s) 1146, 1645
BseMII CTCAG 3 cut(s) 513, 594, 704
BseNI ACTGG 2 cut(s) 1087, 1246
BseXI GCAGC 2 cut(s) 686, 880
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 1418, 1649
BshVI ATCGAT 1 cut(s) 736
BsiHKCI CYCGRG 2 cut(s) 430, 795
BsiSI CCGG 4 cut(s) 818, 929, 1346, 1590
BslFI GGGAC 1 cut(s) 1417
BslI CCNNNNNNNGG 2 cut(s) 1146, 1645
BsmAI GTCTC 1 cut(s) 1392
BsmFI GGGAC 1 cut(s) 1417
BsnI GGCC 2 cut(s) 1418, 1649
BsoBI CYCGRG 2 cut(s) 430, 795
Bsp1286I GDGCHC 1 cut(s) 1038
Bsp143I GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
Bsp19I CCATGG 1 cut(s) 700
BspACI CCGC 4 cut(s) 657, 777, 1280, 1629
BspANI GGCC 2 cut(s) 1418, 1649
BspCNI CTCAG 3 cut(s) 512, 595, 705
BspDI ATCGAT 1 cut(s) 736
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 1153
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 3 cut(s) 691, 741, 834
BsrI ACTGG 2 cut(s) 1087, 1246
BssECI CCNNGG 2 cut(s) 700, 1095
BssMI GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
BssT1I CCWWGG 2 cut(s) 700, 1095
Bst4CI ACNGT 5 cut(s) 68, 572, 804, 844, 1144
Bst6I CTCTTC 2 cut(s) 303, 1287
BstC8I GCNNGC 2 cut(s) 667, 964
BstDEI CTNAG 4 cut(s) 499, 518, 603, 713
BstDSI CCRYGG 1 cut(s) 700
BstEII GGTNACC 1 cut(s) 1606
BstF5I GGATG 5 cut(s) 136, 870, 998, 1464, 1726
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 7 cut(s) 76, 552, 699, 736, 829, 834, 1069
BstMAI GTCTC 1 cut(s) 1392
BstMBI GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
BstMWI GCNNNNNNNGC 5 cut(s) 113, 671, 893, 1129, 1635
BstNSI RCATGY 3 cut(s) 363, 766, 1217
BstPAI GACNNNNGTC 1 cut(s) 687
BstPI GGTNACC 1 cut(s) 1606
BstSCI CCNGG 2 cut(s) 1345, 1588
BstSFI CTRYAG 1 cut(s) 1351
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 686, 880
BstV2I GAAGAC 3 cut(s) 495, 566, 1670
BstX2I RGATCY 4 cut(s) 73, 696, 826, 1066
BstYI RGATCY 4 cut(s) 73, 696, 826, 1066
Bsu15I ATCGAT 1 cut(s) 736
BsuI GTATCC 2 cut(s) 716, 1566
BsuRI GGCC 2 cut(s) 1418, 1649
BsuTUI ATCGAT 1 cut(s) 736
BtgI CCRYGG 1 cut(s) 700
BtsCI GGATG 5 cut(s) 136, 870, 998, 1464, 1726
BtsIMutI CAGTG 1 cut(s) 1239
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 667, 964
ClaI ATCGAT 1 cut(s) 736
CseI GACGC 1 cut(s) 500
Csp6I GTAC 4 cut(s) 782, 800, 1080, 1492
CviQI GTAC 4 cut(s) 782, 800, 1080, 1492
DdeI CTNAG 4 cut(s) 499, 518, 603, 713
DpnI GATC 7 cut(s) 75, 551, 698, 735, 828, 833, 1068
DpnII GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
DraI TTTAAA 1 cut(s) 622
DrdI GACNNNNNNGTC 1 cut(s) 767
DriI GACNNNNNGTC 1 cut(s) 532
DseDI GACNNNNNNGTC 1 cut(s) 767
EaeI YGGCCR 1 cut(s) 1647
Eam1104I CTCTTC 2 cut(s) 303, 1287
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 2 cut(s) 303, 1287
EciI GGCGGA 1 cut(s) 1295
Eco130I CCWWGG 2 cut(s) 700, 1095
Eco24I GRGCYC 1 cut(s) 1038
Eco88I CYCGRG 2 cut(s) 430, 795
Eco91I GGTNACC 1 cut(s) 1606
EcoO65I GGTNACC 1 cut(s) 1606
EcoT14I CCWWGG 2 cut(s) 700, 1095
EcoT22I ATGCAT 2 cut(s) 361, 870
EcoT38I GRGCYC 1 cut(s) 1038
ErhI CCWWGG 2 cut(s) 700, 1095
FaqI GGGAC 1 cut(s) 1417
FauI CCCGC 2 cut(s) 664, 770
FauNDI CATATG 2 cut(s) 513, 1713
Fnu4HI GCNGC 2 cut(s) 675, 894
FokI GGATG 5 cut(s) 143, 877, 1005, 1471, 1733
FriOI GRGCYC 1 cut(s) 1038
Fsp4HI GCNGC 2 cut(s) 675, 894
GluI GCNGC 2 cut(s) 675, 894
HaeIII GGCC 2 cut(s) 1418, 1649
HapII CCGG 4 cut(s) 818, 929, 1346, 1590
HgaI GACGC 1 cut(s) 500
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HpaII CCGG 4 cut(s) 818, 929, 1346, 1590
HphI GGTGA 5 cut(s) 832, 1169, 1309, 1618, 1643
Hpy166II GTNNAC 2 cut(s) 25, 760
Hpy188I TCNGA 5 cut(s) 64, 277, 554, 604, 831
Hpy188III TCNNGA 7 cut(s) 155, 263, 590, 680, 692, 975, 986
Hpy8I GTNNAC 2 cut(s) 25, 760
HpyAV CCTTC 8 cut(s) 260, 662, 817, 873, 952, 983, 1456, 1711
HpyCH4III ACNGT 5 cut(s) 68, 572, 804, 844, 1144
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 671, 893, 1129, 1635
HpyF3I CTNAG 4 cut(s) 499, 518, 603, 713
Kzo9I GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 2 cut(s) 686, 880
LweI GCATC 5 cut(s) 178, 597, 855, 1110, 1126
MaeIII GTNAC 3 cut(s) 557, 1606, 1631
MalI GATC 7 cut(s) 75, 551, 698, 735, 828, 833, 1068
MboI GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
MfeI CAATTG 3 cut(s) 285, 639, 1125
MflI RGATCY 4 cut(s) 73, 696, 826, 1066
MhlI GDGCHC 1 cut(s) 1038
MlsI TGGCCA 1 cut(s) 1649
MluNI TGGCCA 1 cut(s) 1649
MlyI GAGTC 4 cut(s) 422, 491, 1439, 1632
MmeI TCCRAC 3 cut(s) 360, 1023, 1337
Mox20I TGGCCA 1 cut(s) 1649
Mph1103I ATGCAT 2 cut(s) 361, 870
MroXI GAANNNNTTC 1 cut(s) 1729
MscI TGGCCA 1 cut(s) 1649
MseI TTAA 5 cut(s) 621, 900, 1113, 1380, 1503
MslI CAYNNNNRTG 3 cut(s) 360, 1182, 1604
Msp20I TGGCCA 1 cut(s) 1649
MspI CCGG 4 cut(s) 818, 929, 1346, 1590
MspR9I CCNGG 2 cut(s) 1347, 1590
MunI CAATTG 3 cut(s) 285, 639, 1125
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 113, 671, 893, 1129, 1635
NciI CCSGG 2 cut(s) 1347, 1590
NcoI CCATGG 1 cut(s) 700
NdeI CATATG 2 cut(s) 513, 1713
NdeII GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
NlaIV GGNNCC 1 cut(s) 1153
NmuCI GTSAC 2 cut(s) 1606, 1631
NsiI ATGCAT 2 cut(s) 361, 870
NspI RCATGY 3 cut(s) 363, 766, 1217
PaeR7I CTCGAG 1 cut(s) 430
PciI ACATGT 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 1729
PfeI GAWTC 6 cut(s) 814, 999, 1174, 1342, 1615, 1694
PflMI CCANNNNNTGG 2 cut(s) 1146, 1645
PkrI GCNGC 2 cut(s) 676, 895
PleI GAGTC 4 cut(s) 422, 491, 1438, 1631
PpsI GAGTC 4 cut(s) 422, 491, 1438, 1631
PscI ACATGT 1 cut(s) 762
PshAI GACNNNNGTC 1 cut(s) 687
PshBI ATTAAT 1 cut(s) 1503
PspEI GGTNACC 1 cut(s) 1606
PspN4I GGNNCC 1 cut(s) 1153
PspXI VCTCGAGB 1 cut(s) 430
PsuI RGATCY 4 cut(s) 73, 696, 826, 1066
RsaI GTAC 4 cut(s) 783, 801, 1081, 1493
RsaNI GTAC 4 cut(s) 782, 800, 1080, 1492
RseI CAYNNNNRTG 3 cut(s) 360, 1182, 1604
SaqAI TTAA 5 cut(s) 621, 900, 1113, 1380, 1503
SatI GCNGC 2 cut(s) 675, 894
Sau3AI GATC 7 cut(s) 73, 549, 696, 733, 826, 831, 1066
SchI GAGTC 4 cut(s) 422, 491, 1439, 1632
ScrFI CCNGG 2 cut(s) 1347, 1590
SduI GDGCHC 1 cut(s) 1038
SfaNI GCATC 5 cut(s) 178, 597, 855, 1110, 1126
SfcI CTRYAG 1 cut(s) 1351
Sfr274I CTCGAG 1 cut(s) 430
SlaI CTCGAG 1 cut(s) 430
SmiMI CAYNNNNRTG 3 cut(s) 360, 1182, 1604
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
SpeI ACTAGT 1 cut(s) 784
SsiI CCGC 4 cut(s) 657, 777, 1280, 1629
SspI AATATT 1 cut(s) 1267
StyD4I CCNGG 2 cut(s) 1345, 1588
StyI CCWWGG 2 cut(s) 700, 1095
TaaI ACNGT 5 cut(s) 68, 572, 804, 844, 1144
TaqI TCGA 6 cut(s) 196, 242, 431, 736, 1032, 1661
TfiI GAWTC 6 cut(s) 814, 999, 1174, 1342, 1615, 1694
Tru1I TTAA 5 cut(s) 621, 900, 1113, 1380, 1503
Tru9I TTAA 5 cut(s) 621, 900, 1113, 1380, 1503
TscAI CASTG 1 cut(s) 1246
TseFI GTSAC 2 cut(s) 1606, 1631
TseI GCWGC 2 cut(s) 674, 893
Tsp45I GTSAC 2 cut(s) 1606, 1631
TspRI CASTG 1 cut(s) 1246
Van91I CCANNNNNTGG 2 cut(s) 1146, 1645
VspI ATTAAT 1 cut(s) 1503
XapI RAATTY 1 cut(s) 617
XbaI TCTAGA 2 cut(s) 154, 679
XceI RCATGY 3 cut(s) 363, 766, 1217
XhoI CTCGAG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 1729
Zsp2I ATGCAT 2 cut(s) 361, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.