Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016045

Physical Location & Seq

Genomic Coordinates Forward (+)

31383999 .. 31387646

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

ATGTTGATGCTCTGCACAACCTCACCAAACCAGTCATGGGTCTCTCCTTCTTCCTACCAATACATAAACCCAAACCCTTTGAAGCCCCGCTTCATTTTCTTCAGACCCAATTCAAGAACCTCTCTTTTTGGCGCCAAATTTCGTGTCCCGGCGACCACGCTCGCCGGAACTACCCATCGCAAAAATGCTGACAAGAATGTGAAGATTGGCGTGCTCTGTGAACTGGGTAATCTGAAAGAGGCGGTGGAAATGGTGTGCGGGTCGGAAAGCTCCGATCTTGATTCGGCGGCGTACTGCTCCGTCTTGGAGCTCTGCGCCGGAAACAAGTCTCTGAAAGACGGGAAGAGAGTTCACTCGGTTCTTTGTGAGCATGGAGTGAACGTTGATGGGTATGTGGGGGCAAAGCTTGTGTTCATGTATGTGCATTGTGGGGATTTAAGAGAAGCGAGGCGGGTTTTCGATGCATTATCAGATAGAAAAGTTTTCTTATGGAATCTTATGATCAATGAGTATGCCAAGGTTCGTGATTTTAGAGAGGGTGTGTGTTTATTTGGGAAGATGGTGGAGTGTGGTGTTGAGCTGAATTCGTATACGTTTTCGTGTGTTTTCAAGTGTTTTGCTGCTCTTGGGTGTGTTAGGGAAGGTGAGTGGGTTCATGGGTATTTGTATAAGCTGAGATTTGGGTCTGATAGTAATGTGGTGAACTCTTTGATGGCTTTTTATTTCAAGAATGGGAGAGTTGAGAGTGCACGGAAGGTGTTTGATGCGTTGCGTGAGAGAGATGTTGTGTCGTGGAATTCCATGATAAGTGCGTATGTGTCCAATGGTGCTCCGGAGAAGGGGATTGAGATTTTCAGGGAGATGGTTTGGTCTGGGATTGATGTGGACTTGGCTACGATTATTAATGTTCTGATGGCTTGTTCGGACTGTGGGAATGTTGTGTTAGGTAGGGTGGTTCATGGTTATGCGATGAAAGGTGGTTTCGACGTGGATGTTGTGTTATGTAATAGTGTGTTGGATATGTATTCGAAATGTGGTGATTTGAGTGATGCAGTGAGAGTTTTTGAGAAGATGGGTCGAAGAAGTGTTGTGTCGTGGACTTCAATGATAGCCGGTTATGTTAGAGAAGGTCTTTCGGATAAGGCAATTGAGTTGTTTTGTGAGATGGAAAAGGATGATGTTATCCCAGATGTTTATACAATCACAAGCATACTTCATGCATGTGCTTGTAGTGGCTCATTGGAAAAGGGTAAGGATATACACAAGTATATTAGGGAACATGATATGGACTCGAGTTTGTTTGTCTGTAATTCGCTCATAGATATGTATGCAAAATGTGGAAGCATGGAAGATGCTGATTCAGTTTTTTCTCATATGCCTATGAAGGACATCGTGTCATGGAATACCATGATCGGAGGTTTCTCCAAGAACTGCCTTCCAAACGAAGCTCTTGAACTCTTTTCTGATATGCAACGGAAATTTAAACCTGACAGCATGACCCTTGCCAGTGTCCTTCCTGCTTGTGCAAGCCTAGCAGCTCTCGACAGAGGTCAAGAGATCCATGGTTATTTACTGAGACATGGATACTTTTTGGATCAATATGTTGCCAATGCACTTGTTGACATGTATGTCAAGTGCGGGGTGCTAATTCTTGCTCGGGTACTTTTTGAAATGATTCCTGTGAAAGATCTGATCTCTTATACTGTGATAATTGCTGGTTATGGGATGCATGGATTTGGAAAGGAAGCAATTGCTGCATTCAATGAGATGACAAAGGCTGGAATTGAACCGGACAGCATTTCCTTCATCTCTATACTTTATGCTTGCAGTCATTCTGGATTGGTTCAGGAAGGATGGAGATTCTTTGATATTATGAGAAATGATTACAAAATCGAGCCCATGTTGGAGCATTATGCTTGTATGGTGGATCTTCTTGCTCGGACTGGGAATCTAACCAAGGCATATAAATTTATTAACATGATGCCAATTGAGCCAGATGCCACAGTCTGGGGTTCCTTGCTCTGTGGTTGTAGGATTCACCATGATGTGAAACTAGCAGAGAAAGTTGCAGAGCATGTCTTTGAACTAGAGCCAGAAAACACTGGCTATTATATACTTCTAGCAAATATTTATGCAGAGGCAGAAAAGTGGGAAGAGGTGAAGAAGTTGAGGGAGAGGATTGGTCGGCGAAGCTTGAAAAAGAATCCGGGCTGTAGTTGGATAGAGATCAAGGGAAAAGTTAATATCTTTGTTGCAGGAGGCACTTCACACCCAGATGCCATGAAGATAGAGTCCCTAGTGAAGAAATTTAGATCGAGGATGAAGGAAGATGGCTACAATCCTAAAATGCAGTACGCTTTGATTAATGCAGATGAGGTGGAGAAAGAAGTGGCTCTCTGTGGGCATAGTGAGAAATTAGCCATAGCATTCGGGATACTGAACACGCCACCCGGAAAAACCATACGAGTGACCAAGAATCTACGAGTCTGTGGCGACTGCCATGAGATGGCCAAGTTCATATCCAGAACATCTAGGAGGGAAATTGTTTTGAGAGATTCTAACCGCTTTCATCATATGAAGGATGGGAATTGTTCATACTCTTCTCCACAAAAGTTTTCGCCTAAGCTCCAATCTCCTCCGCTACGCGCGTTTGGGGATTATGGTTTAGCTCATCTCTCTCAGGTGCTCATGGAGGAGGACATGGAATCAAAGCCATGTATGTTCCATGACCCTTTGGTTCTTCAAGCCACTGAGGAGTCTCTTTATGAGGTTATTGGAGGAGGGATCCCAAGACCAAAACCCTCTTTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0009987 GO:0010016 GO:0010051 GO:0010087 GO:0010154 GO:0010305 GO:0010588 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090698 GO:0097159 GO:0099402 GO:1900865 GO:1901360 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

938

Amino Acids

105.02

Weight (kDa)

6.69

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 207	6.4e-10	PPR repeat family
PPR_2	PF13041	260 - 300	7.8e-08	PPR repeat family
PPR	PF01535	263 - 293	1.9e-08	PPR repeat
PPR_2	PF13041	362 - 409	5.6e-14	PPR repeat family
PPR	PF01535	364 - 393	5.7e-09	PPR repeat
PPR_2	PF13041	462 - 509	8.4e-10	PPR repeat family
PPR	PF01535	465 - 493	1.9e-07	PPR repeat
PPR_2	PF13041	563 - 610	9.4e-09	PPR repeat family
E_motif	PF20431	680 - 742	1.2e-19	E motif
DYW_deaminase	PF14432	778 - 866	7.3e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18750
fragaria_vesca	FvH4_3g36560 FvH4_3g36640
malus_domestica	MD10G1276800.v1.1
prunus_persica	Prupe.4G065400_v2.0.a1
pyrus_communis	pycom10g23110
rosa_chinensis	RchiOBHm_Chr5g0011421
rosa_laevigata	RLG00000031832
rosa_multiflora	Rmu_co8262965.1_g000001 Rmu_sc0009975.1_g000017
rosa_roxburghii	Rroxscaffold_1G00065030
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083800 Rh5CG097300
rosa_wichuraiana	Rw5G007710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1628
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	2 cut(s)	2007, 2506
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	2 cut(s)	2646, 2648
AccIII	TCCGGA	1 cut(s)	832
AciI	CCGC	8 cut(s)	88, 242, 258, 287, 451, 1638, 2563, 2639
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	5 cut(s)	1552, 1602, 1935, 2779, 2792
AcoI	YGGCCR	1 cut(s)	2508
AcsI	RAATTY	6 cut(s)	137, 583, 796, 1478, 1967, 2306
AcuI	CTGAAG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	293, 1662, 2354
AfiI	CCNNNNNNNGG	4 cut(s)	37, 839, 2007, 2506
AflIII	ACRYGT	1 cut(s)	1623
AhdI	GACNNNNNGTC	1 cut(s)	1393
AjiI	CACGTC	1 cut(s)	988
Alw21I	GWGCWC	5 cut(s)	216, 312, 751, 832, 2688
Alw26I	GTCTC	4 cut(s)	46, 333, 1570, 2763
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	5 cut(s)	1552, 1602, 1935, 2779, 2792
Ama87I	CYCGRG	2 cut(s)	1291, 1656
Aor13HI	TCCGGA	1 cut(s)	832
AoxI	GGCC	1 cut(s)	2508
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	3 cut(s)	620, 1535, 1754
ApoI	RAATTY	6 cut(s)	137, 583, 796, 1478, 1967, 2306
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AseI	ATTAAT	2 cut(s)	903, 2364
Asp700I	GAANNNNTTC	1 cut(s)	1674
AspLEI	GCGC	3 cut(s)	134, 317, 2648
AsuC2I	CCSGG	3 cut(s)	149, 2208, 2451
AsuHPI	GGTGA	6 cut(s)	15, 656, 712, 1049, 2030, 2170
AsuII	TTCGAA	1 cut(s)	1028
AvaI	CYCGRG	2 cut(s)	1291, 1656
BaeGI	GKGCMC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	2510
BamHI	GGATCC	1 cut(s)	2784
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	312, 1899
Bbv12I	GWGCWC	5 cut(s)	216, 312, 751, 832, 2688
BbvI	GCAGC	3 cut(s)	607, 1547, 1741
BciVI	GTATCC	2 cut(s)	1577, 2427
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	3 cut(s)	149, 2208, 2451
BcoDI	GTCTC	4 cut(s)	46, 333, 1570, 2763
BfaI	CTAG	6 cut(s)	1532, 2054, 2087, 2120, 2297, 2532
BfmI	CTRYAG	1 cut(s)	2212
BfoI	RGCGCY	1 cut(s)	135
BfuI	GTATCC	2 cut(s)	1577, 2427
BglII	AGATCT	1 cut(s)	1687
BisI	GCNGC	4 cut(s)	288, 621, 1536, 1755
BlsI	GCNGC	4 cut(s)	289, 622, 1537, 1756
Bme1390I	CCNGG	3 cut(s)	149, 2208, 2451
BmeRI	GACNNNNNGTC	1 cut(s)	1393
BmeT110I	CYCGRG	2 cut(s)	1291, 1656
BmgBI	CACGTC	1 cut(s)	988
BmiI	GGNNCC	3 cut(s)	133, 2014, 2786
BmrFI	CCNGG	3 cut(s)	149, 2208, 2451
BmrI	ACTGGG	2 cut(s)	233, 1953
BmsI	GCATC	8 cut(s)	451, 754, 1039, 1342, 1716, 1971, 1987, 2266
BmuI	ACTGGG	2 cut(s)	233, 1953
BoxI	GACNNNNGTC	1 cut(s)	1548
Bpu10I	CCTNAGC	1 cut(s)	2622
Bpu14I	TTCGAA	1 cut(s)	1028
BpuMI	CCSGG	3 cut(s)	149, 2208, 2451
BsaBI	GATNNNNATC	1 cut(s)	2225
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	516, 1561, 1956
BsaWI	WCCGGW	2 cut(s)	832, 1789
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 839, 2007, 2506
Bse118I	RCCGGY	1 cut(s)	1112
Bse1I	ACTGG	5 cut(s)	31, 228, 1506, 1948, 2107
Bse8I	GATNNNNATC	1 cut(s)	2225
BseAI	TCCGGA	1 cut(s)	832
BseDI	CCNNGG	3 cut(s)	516, 1561, 1956
BseGI	GGATG	6 cut(s)	997, 1180, 1731, 1859, 2325, 2587
BseJI	GATNNNNATC	1 cut(s)	2225
BseLI	CCNNNNNNNGG	4 cut(s)	37, 839, 2007, 2506
BseMII	CTCAG	4 cut(s)	665, 1565, 2693, 2742
BseNI	ACTGG	5 cut(s)	31, 228, 1506, 1948, 2107
BseRI	GAGGAG	4 cut(s)	2625, 2708, 2768, 2793
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	3 cut(s)	607, 1547, 1741
Bsh1236I	CGCG	2 cut(s)	2646, 2648
BshFI	GGCC	1 cut(s)	2510
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	5 cut(s)	216, 312, 751, 832, 2688
BsiHKCI	CYCGRG	2 cut(s)	1291, 1656
BsiSI	CCGG	8 cut(s)	149, 165, 318, 833, 1113, 1790, 2207, 2451
BslFI	GGGAC	2 cut(s)	131, 2278
BslI	CCNNNNNNNGG	4 cut(s)	37, 839, 2007, 2506
BsmAI	GTCTC	4 cut(s)	46, 333, 1570, 2763
BsmFI	GGGAC	2 cut(s)	131, 2278
BsmI	GAATGC	2 cut(s)	1757, 2426
BsnI	GGCC	1 cut(s)	2510
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	1291, 1656
Bsp119I	TTCGAA	1 cut(s)	1028
Bsp1286I	GDGCHC	6 cut(s)	216, 312, 751, 832, 1899, 2688
Bsp13I	TCCGGA	1 cut(s)	832
Bsp19I	CCATGG	1 cut(s)	1561
BspACI	CCGC	8 cut(s)	88, 242, 258, 287, 451, 1638, 2563, 2639
BspANI	GGCC	1 cut(s)	2510
BspCNI	CTCAG	4 cut(s)	666, 1566, 2692, 2743
BspEI	TCCGGA	1 cut(s)	832
BspFNI	CGCG	2 cut(s)	2646, 2648
BspLI	GGNNCC	3 cut(s)	133, 2014, 2786
BspPI	GGATC	5 cut(s)	1552, 1602, 1935, 2779, 2792
BspT104I	TTCGAA	1 cut(s)	1028
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	1112
BsrI	ACTGG	5 cut(s)	31, 228, 1506, 1948, 2107
BssAI	RCCGGY	1 cut(s)	1112
BssECI	CCNNGG	3 cut(s)	516, 1561, 1956
BssNAI	GTATAC	1 cut(s)	591
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	516, 1561, 1956
Bst1107I	GTATAC	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	929, 1705, 2005
Bst6I	CTCTTC	3 cut(s)	338, 2148, 2605
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstBI	TTCGAA	1 cut(s)	1028
BstC8I	GCNNGC	4 cut(s)	162, 212, 1528, 1825
BstDEI	CTNAG	5 cut(s)	674, 1574, 2622, 2679, 2751
BstDSI	CCRYGG	1 cut(s)	1561
BstF5I	GGATG	6 cut(s)	997, 1180, 1731, 1859, 2325, 2587
BstFNI	CGCG	2 cut(s)	2646, 2648
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	3 cut(s)	134, 317, 2648
BstMAI	GTCTC	4 cut(s)	46, 333, 1570, 2763
BstMWI	GCNNNNNNNGC	3 cut(s)	1532, 1754, 1990
BstNSI	RCATGY	3 cut(s)	1224, 1627, 2078
BstPAI	GACNNNNGTC	1 cut(s)	1548
BstSCI	CCNGG	3 cut(s)	147, 2206, 2449
BstSFI	CTRYAG	1 cut(s)	2212
BstSLI	GKGCMC	1 cut(s)	751
BstUI	CGCG	2 cut(s)	2646, 2648
BstV1I	GCAGC	3 cut(s)	607, 1547, 1741
BstX2I	RGATCY	4 cut(s)	1557, 1687, 1927, 2784
BstYI	RGATCY	4 cut(s)	1557, 1687, 1927, 2784
BstZ17I	GTATAC	1 cut(s)	591
BsuI	GTATCC	2 cut(s)	1577, 2427
BsuRI	GGCC	1 cut(s)	2510
BtgI	CCRYGG	1 cut(s)	1561
BtgZI	GCGATG	2 cut(s)	161, 983
BtrI	CACGTC	1 cut(s)	988
BtsCI	GGATG	6 cut(s)	997, 1180, 1731, 1859, 2325, 2587
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	4 cut(s)	1059, 1513, 2100, 2748
Cac8I	GCNNGC	4 cut(s)	162, 212, 1528, 1825
CfoI	GCGC	3 cut(s)	134, 317, 2648
Cfr10I	RCCGGY	1 cut(s)	1112
Csp6I	GTAC	3 cut(s)	292, 1661, 2353
CviQI	GTAC	3 cut(s)	292, 1661, 2353
DdeI	CTNAG	5 cut(s)	674, 1574, 2622, 2679, 2751
DinI	GGCGCC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	1483
DrdI	GACNNNNNNGTC	1 cut(s)	1628
DriI	GACNNNNNGTC	1 cut(s)	1393
DseDI	GACNNNNNNGTC	1 cut(s)	1628
EaeI	YGGCCR	1 cut(s)	2508
Eam1104I	CTCTTC	3 cut(s)	338, 2148, 2605
Eam1105I	GACNNNNNGTC	1 cut(s)	1393
EarI	CTCTTC	3 cut(s)	338, 2148, 2605
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	3 cut(s)	516, 1561, 1956
Eco24I	GRGCYC	2 cut(s)	312, 1899
Eco31I	GGTCTC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	85
Eco88I	CYCGRG	2 cut(s)	1291, 1656
EcoICRI	GAGCTC	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	583, 796
EcoT14I	CCWWGG	3 cut(s)	516, 1561, 1956
EcoT22I	ATGCAT	3 cut(s)	466, 1222, 1731
EcoT38I	GRGCYC	2 cut(s)	312, 1899
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	516, 1561, 1956
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	2 cut(s)	131, 2278
FauI	CCCGC	4 cut(s)	95, 251, 444, 1631
FauNDI	CATATG	2 cut(s)	1374, 2574
FbaI	TGATCA	1 cut(s)	501
FblI	GTMKAC	1 cut(s)	590
Fnu4HI	GCNGC	4 cut(s)	288, 621, 1536, 1755
FokI	GGATG	6 cut(s)	1004, 1187, 1738, 1866, 2332, 2594
FriOI	GRGCYC	2 cut(s)	312, 1899
Fsp4HI	GCNGC	4 cut(s)	288, 621, 1536, 1755
FspBI	CTAG	6 cut(s)	1532, 2054, 2087, 2120, 2297, 2532
GlaI	GCGC	3 cut(s)	133, 316, 2647
GluI	GCNGC	4 cut(s)	288, 621, 1536, 1755
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	2510
HapII	CCGG	8 cut(s)	149, 165, 318, 833, 1113, 1790, 2207, 2451
HhaI	GCGC	3 cut(s)	134, 317, 2648
Hin1I	GRCGYC	1 cut(s)	132
Hin6I	GCGC	3 cut(s)	132, 315, 2646
HinP1I	GCGC	3 cut(s)	132, 315, 2646
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HindIII	AAGCTT	2 cut(s)	404, 2191
HpaII	CCGG	8 cut(s)	149, 165, 318, 833, 1113, 1790, 2207, 2451
HphI	GGTGA	6 cut(s)	15, 656, 712, 1049, 2030, 2170
Hpy166II	GTNNAC	9 cut(s)	221, 352, 379, 591, 703, 749, 886, 1098, 1621
Hpy8I	GTNNAC	9 cut(s)	221, 352, 379, 591, 703, 749, 886, 1098, 1621
Hpy99I	CGWCG	1 cut(s)	989
HpyCH4III	ACNGT	3 cut(s)	929, 1705, 2005
HpyCH4IV	ACGT	3 cut(s)	381, 593, 987
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1532, 1754, 1990
HpyF3I	CTNAG	5 cut(s)	674, 1574, 2622, 2679, 2751
HpySE526I	ACGT	3 cut(s)	381, 593, 987
Hsp92I	GRCGYC	1 cut(s)	132
HspAI	GCGC	3 cut(s)	132, 315, 2646
KasI	GGCGCC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	832
Ksp22I	TGATCA	1 cut(s)	501
LmnI	GCTCC	6 cut(s)	275, 302, 307, 835, 1906, 2631
Lsp1109I	GCAGC	3 cut(s)	607, 1547, 1741
LweI	GCATC	8 cut(s)	451, 754, 1039, 1342, 1716, 1971, 1987, 2266
MaeI	CTAG	6 cut(s)	1532, 2054, 2087, 2120, 2297, 2532
MaeII	ACGT	3 cut(s)	381, 593, 987
MaeIII	GTNAC	1 cut(s)	2467
MfeI	CAATTG	3 cut(s)	1146, 1749, 1986
MflI	RGATCY	4 cut(s)	1557, 1687, 1927, 2784
MhlI	GDGCHC	6 cut(s)	216, 312, 751, 832, 1899, 2688
MlsI	TGGCCA	1 cut(s)	2510
MluNI	TGGCCA	1 cut(s)	2510
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	4 cut(s)	1283, 2300, 2493, 2765
MmeI	TCCRAC	4 cut(s)	243, 996, 1884, 2198
Mox20I	TGGCCA	1 cut(s)	2510
Mph1103I	ATGCAT	3 cut(s)	466, 1222, 1731
MroI	TCCGGA	1 cut(s)	832
MroXI	GAANNNNTTC	1 cut(s)	1674
MscI	TGGCCA	1 cut(s)	2510
MseI	TTAA	6 cut(s)	437, 903, 1482, 1974, 2241, 2364
MslI	CAYNNNNRTG	7 cut(s)	419, 963, 1221, 1322, 2043, 2274, 2465
Msp20I	TGGCCA	1 cut(s)	2510
MspI	CCGG	8 cut(s)	149, 165, 318, 833, 1113, 1790, 2207, 2451
MspR9I	CCNGG	3 cut(s)	149, 2208, 2451
MunI	CAATTG	3 cut(s)	1146, 1749, 1986
Mva1269I	GAATGC	2 cut(s)	1757, 2426
MvnI	CGCG	2 cut(s)	2646, 2648
MwoI	GCNNNNNNNGC	3 cut(s)	1532, 1754, 1990
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	3 cut(s)	149, 2208, 2451
NcoI	CCATGG	1 cut(s)	1561
NdeI	CATATG	2 cut(s)	1374, 2574
NlaIV	GGNNCC	3 cut(s)	133, 2014, 2786
NmuCI	GTSAC	1 cut(s)	2467
NsiI	ATGCAT	3 cut(s)	466, 1222, 1731
NspI	RCATGY	3 cut(s)	1224, 1627, 2078
NspV	TTCGAA	1 cut(s)	1028
PaeR7I	CTCGAG	1 cut(s)	1291
PciI	ACATGT	1 cut(s)	1623
PctI	GAATGC	2 cut(s)	1757, 2426
PdmI	GAANNNNTTC	1 cut(s)	1674
PflMI	CCANNNNNTGG	2 cut(s)	2007, 2506
PkrI	GCNGC	4 cut(s)	289, 622, 1537, 1756
PleI	GAGTC	4 cut(s)	1283, 2299, 2492, 2764
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	4 cut(s)	1283, 2299, 2492, 2764
PscI	ACATGT	1 cut(s)	1623
PshAI	GACNNNNGTC	1 cut(s)	1548
PshBI	ATTAAT	2 cut(s)	903, 2364
Psp124BI	GAGCTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	133, 2014, 2786
PspXI	VCTCGAGB	1 cut(s)	1291
PsuI	RGATCY	4 cut(s)	1557, 1687, 1927, 2784
RsaI	GTAC	3 cut(s)	293, 1662, 2354
RsaNI	GTAC	3 cut(s)	292, 1661, 2353
RseI	CAYNNNNRTG	7 cut(s)	419, 963, 1221, 1322, 2043, 2274, 2465
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	6 cut(s)	437, 903, 1482, 1974, 2241, 2364
SatI	GCNGC	4 cut(s)	288, 621, 1536, 1755
SchI	GAGTC	4 cut(s)	1283, 2300, 2493, 2765
ScrFI	CCNGG	3 cut(s)	149, 2208, 2451
SduI	GDGCHC	6 cut(s)	216, 312, 751, 832, 1899, 2688
SfaNI	GCATC	8 cut(s)	451, 754, 1039, 1342, 1716, 1971, 1987, 2266
SfcI	CTRYAG	1 cut(s)	2212
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	1291
SfuI	TTCGAA	1 cut(s)	1028
SlaI	CTCGAG	1 cut(s)	1291
SmiMI	CAYNNNNRTG	7 cut(s)	419, 963, 1221, 1322, 2043, 2274, 2465
SmlI	CTYRAG	1 cut(s)	1291
SmoI	CTYRAG	1 cut(s)	1291
SsiI	CCGC	8 cut(s)	88, 242, 258, 287, 451, 1638, 2563, 2639
SspDI	GGCGCC	1 cut(s)	131
SspI	AATATT	1 cut(s)	2128
SspMI	CTAG	6 cut(s)	1532, 2054, 2087, 2120, 2297, 2532
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	147, 2206, 2449
StyI	CCWWGG	3 cut(s)	516, 1561, 1956
TaaI	ACNGT	3 cut(s)	929, 1705, 2005
TaiI	ACGT	3 cut(s)	384, 596, 990
TaqI	TCGA	8 cut(s)	459, 984, 1028, 1078, 1292, 1542, 1893, 2315
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	6 cut(s)	437, 903, 1482, 1974, 2241, 2364
Tru9I	TTAA	6 cut(s)	437, 903, 1482, 1974, 2241, 2364
TscAI	CASTG	4 cut(s)	1059, 1513, 2107, 2755
TseFI	GTSAC	1 cut(s)	2467
TseI	GCWGC	3 cut(s)	620, 1535, 1754
Tsp45I	GTSAC	1 cut(s)	2467
TspGWI	ACGGA	3 cut(s)	289, 766, 1489
TspRI	CASTG	4 cut(s)	1059, 1513, 2107, 2755
Van91I	CCANNNNNTGG	2 cut(s)	2007, 2506
VneI	GTGCAC	1 cut(s)	747
VspI	ATTAAT	2 cut(s)	903, 2364
XapI	RAATTY	6 cut(s)	137, 583, 796, 1478, 1967, 2306
XceI	RCATGY	3 cut(s)	1224, 1627, 2078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	1291
XmiI	GTMKAC	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	1674
XspI	CTAG	6 cut(s)	1532, 2054, 2087, 2120, 2297, 2532
Zsp2I	ATGCAT	3 cut(s)	466, 1222, 1731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.