Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

10307810 .. 10309591

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGAAACCTCCGTCGTTACCGTTACTCCTCCTCCTCCTCCACCTCTCAGCCACTATCTCCGCCGCTCCTTCCCTCTCTCCAACTCCATCTCCAACCACCTCTCCCATTCCACCTCACAAACCTTCCTCATCCTCTTCCCCATTAGACCCAAAACAACTCAAAGCCCTTGAATCTCTCAACATCCCCACCGTCAAAGATCCTTGCAACCACCGTCCCACCACCAAATCCACCTCCTCCTCCGTCGTAACCTGCGACACCAGCTCCCCATTTCGCCTCGTCACTTCCATCTCCTTCACAAATTGCTCCACCGATCTCTCCATCTCCACAACAGCTCTCAGAGCTCTCTCACCATCTCTAACCTCTCTCTCTTTCCTCAACTGTCCTTCACTCTCCCCTCCTCCACGTCTCCCTGACTCACTCCACTCCTTCACCGCCGTCTCCTCCTTCCTCCGCCGCCGTAATGGCCTCTCCGGAGTCTTCTTAGCTCGTCTCGTTAACCTCACTGACCTCACAGTCTCTTCTGTTCCAGTCTCAACCTCTGGTCTCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCAAATCTCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCAGACAATCTACTCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTCTCTAAATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAATCTCCTTAAAAAACCTATCTTTATCCTCAAACAAGCTATCAGGACCAATCCCAGATTCAATCTCATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCATTCCAAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCTTCCATGGAGTTCTACCATTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATCGGTGGAAACAGTGATCTTTGTTACAACCATAGTGTATTGTCATCGAAGATGAAATTGGGTATTGCTCAGTGTGATAAACATGGTTTGCCTTTGTCTCCACCGCCGCAGAAAGAAGATTCGAATTCAGATTATGATTACGGAAATGAAGATGATACTAGTGAGAAGAAGAAAGAAGAGCATCATGGTCCTAATAAAGTTGTGCTTGGTGTTGCTATTGGACTTTCTTCACTTGTGTTCTTAATCATCTTCATGATCCTTCTCGCCAAATGGTGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

431

Amino Acids

46.07

Weight (kDa)

8.75

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	229 - 317	7.4e-07	Leucine-rich repeat region
LRR_8	PF13855	236 - 296	8.9e-11	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	893
AccBSI	CCGCTC	1 cut(s)	65
AccIII	TCCGGA	3 cut(s)	470, 608, 746
AciI	CCGC	7 cut(s)	60, 63, 432, 451, 454, 1118, 1121
AclWI	GGATC	2 cut(s)	191, 1264
AcsI	RAATTY	2 cut(s)	724, 1138
AgsI	TTSAA	5 cut(s)	170, 837, 940, 979, 1012
AhlI	ACTAGT	1 cut(s)	1172
AjiI	CACGTC	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	4 cut(s)	817, 849, 1055, 1087
AluBI	AGCT	8 cut(s)	261, 332, 341, 485, 814, 856, 947, 987
AluI	AGCT	8 cut(s)	261, 332, 341, 485, 814, 856, 947, 987
Alw21I	GWGCWC	1 cut(s)	343
AlwI	GGATC	2 cut(s)	191, 1264
Aor13HI	TCCGGA	3 cut(s)	470, 608, 746
AoxI	GGCC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	724, 1138
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspA2I	CCTAGG	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	821, 1202
AsuHPI	GGTGA	3 cut(s)	339, 421, 782
AsuII	TTCGAA	1 cut(s)	1136
AvaII	GGWCC	2 cut(s)	821, 1202
AvrII	CCTAGG	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	343
BccI	CCATC	5 cut(s)	94, 293, 326, 358, 749
BceAI	ACGGC	3 cut(s)	419, 441, 907
BcuI	ACTAGT	1 cut(s)	1172
BfaI	CTAG	3 cut(s)	557, 944, 1173
BfuAI	ACCTGC	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	868
BisI	GCNGC	3 cut(s)	63, 454, 1121
BlnI	CCTAGG	1 cut(s)	556
BlsI	GCNGC	3 cut(s)	64, 455, 1122
Bme18I	GGWCC	2 cut(s)	821, 1202
BmgBI	CACGTC	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	821, 1202
BmiI	GGNNCC	2 cut(s)	881, 895
BmsI	GCATC	1 cut(s)	1204
BpiI	GAAGAC	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
Bpu14I	TTCGAA	1 cut(s)	1136
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	556, 961
BsaWI	WCCGGW	3 cut(s)	470, 608, 746
Bse1I	ACTGG	1 cut(s)	527
BseAI	TCCGGA	3 cut(s)	470, 608, 746
BseDI	CCNNGG	2 cut(s)	556, 961
BseGI	GGATG	4 cut(s)	128, 180, 615, 842
BseMII	CTCAG	4 cut(s)	60, 349, 863, 1097
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	8 cut(s)	17, 20, 23, 26, 223, 226, 387, 430
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	893
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	3 cut(s)	471, 609, 747
BslFI	GGGAC	1 cut(s)	198
BsmBI	CGTCTC	4 cut(s)	410, 442, 494, 583
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	1136
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp13I	TCCGGA	3 cut(s)	470, 608, 746
Bsp143I	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	7 cut(s)	60, 63, 432, 451, 454, 1118, 1121
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	4 cut(s)	59, 348, 864, 1096
BspEI	TCCGGA	3 cut(s)	470, 608, 746
BspHI	TCATGA	1 cut(s)	1266
BspLI	GGNNCC	2 cut(s)	881, 895
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	191, 1264
BspQI	GCTCTTC	1 cut(s)	1185
BspT104I	TTCGAA	1 cut(s)	1136
BspT107I	GGYRCC	1 cut(s)	893
BspTNI	GGTCTC	1 cut(s)	548
BsrBI	CCGCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	556, 961
BssMI	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	2 cut(s)	556, 961
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	6 cut(s)	21, 190, 212, 380, 514, 1028
Bst6I	CTCTTC	4 cut(s)	139, 523, 551, 1185
BstBI	TTCGAA	1 cut(s)	1136
BstC8I	GCNNGC	1 cut(s)	985
BstDEI	CTNAG	6 cut(s)	46, 335, 481, 865, 872, 1083
BstDSI	CCRYGG	1 cut(s)	961
BstEII	GGTNACC	1 cut(s)	770
BstF5I	GGATG	4 cut(s)	128, 180, 615, 842
BstKTI	GATC	6 cut(s)	199, 313, 576, 871, 1033, 1272
BstMBI	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 338, 462, 953
BstPI	GGTNACC	1 cut(s)	770
BstV2I	GAAGAC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	196, 868
BstYI	RGATCY	2 cut(s)	196, 868
BsuRI	GGCC	1 cut(s)	465
BtgI	CCRYGG	1 cut(s)	961
BtrI	CACGTC	1 cut(s)	404
BtsCI	GGATG	4 cut(s)	128, 180, 615, 842
BtsIMutI	CAGTG	3 cut(s)	501, 1033, 1091
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	985
CciI	TCATGA	1 cut(s)	1266
Cfr13I	GGNCC	2 cut(s)	821, 1202
CspCI	CAANNNNNGTGG	3 cut(s)	1000, 1035, 1270
CviAII	CATG	4 cut(s)	962, 1097, 1199, 1267
DdeI	CTNAG	6 cut(s)	46, 335, 481, 865, 872, 1083
DpnI	GATC	6 cut(s)	198, 312, 575, 870, 1032, 1271
DpnII	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
Eam1104I	CTCTTC	4 cut(s)	139, 523, 551, 1185
EarI	CTCTTC	4 cut(s)	139, 523, 551, 1185
EciI	GGCGGA	2 cut(s)	49, 440
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	556, 961
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	821, 1202
Eco53kI	GAGCTC	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	770
EcoICRI	GAGCTC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	1138
EcoT14I	CCWWGG	2 cut(s)	556, 961
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	2 cut(s)	556, 961
Esp3I	CGTCTC	4 cut(s)	410, 442, 494, 583
FaeI	CATG	4 cut(s)	965, 1100, 1202, 1270
FaiI	YATR	8 cut(s)	566, 755, 963, 1047, 1098, 1149, 1200, 1268
FalI	AAGNNNNNCTT	2 cut(s)	1203, 1235
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	961, 1096, 1198, 1266
Fnu4HI	GCNGC	3 cut(s)	63, 454, 1121
FokI	GGATG	4 cut(s)	115, 167, 602, 829
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	3 cut(s)	63, 454, 1121
FspBI	CTAG	3 cut(s)	557, 944, 1173
GluI	GCNGC	3 cut(s)	63, 454, 1121
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	3 cut(s)	471, 609, 747
Hin1II	CATG	4 cut(s)	965, 1100, 1202, 1270
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	9 cut(s)	170, 413, 474, 761, 833, 906, 940, 997, 1133
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	3 cut(s)	471, 609, 747
HphI	GGTGA	3 cut(s)	339, 421, 782
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	4 cut(s)	338, 661, 873, 1144
Hpy188III	TCNNGA	8 cut(s)	471, 609, 747, 819, 851, 994, 1001, 1267
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	2 cut(s)	16, 245
HpyAV	CCTTC	8 cut(s)	78, 132, 301, 393, 436, 454, 967, 1283
HpyCH4III	ACNGT	6 cut(s)	21, 190, 212, 380, 514, 1028
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	2 cut(s)	204, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 338, 462, 953
HpyF3I	CTNAG	6 cut(s)	46, 335, 481, 865, 872, 1083
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	4 cut(s)	965, 1100, 1202, 1270
Kpn2I	TCCGGA	3 cut(s)	470, 608, 746
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
LguI	GCTCTTC	1 cut(s)	1185
LmnI	GCTCC	3 cut(s)	70, 266, 308
LweI	GCATC	1 cut(s)	1204
MaeI	CTAG	3 cut(s)	557, 944, 1173
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	6 cut(s)	15, 21, 244, 277, 770, 1037
MalI	GATC	6 cut(s)	198, 312, 575, 870, 1032, 1271
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
MflI	RGATCY	2 cut(s)	196, 868
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	4 cut(s)	298, 724, 1070, 1138
MlyI	GAGTC	3 cut(s)	407, 483, 755
MmeI	TCCRAC	2 cut(s)	104, 116
MroI	TCCGGA	3 cut(s)	470, 608, 746
MseI	TTAA	3 cut(s)	495, 785, 1256
MslI	CAYNNNNRTG	1 cut(s)	1265
MspI	CCGG	3 cut(s)	471, 609, 747
MwoI	GCNNNNNNNGC	4 cut(s)	258, 338, 462, 953
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
NlaIII	CATG	4 cut(s)	965, 1100, 1202, 1270
NlaIV	GGNNCC	2 cut(s)	881, 895
NmuCI	GTSAC	2 cut(s)	277, 770
NspV	TTCGAA	1 cut(s)	1136
PagI	TCATGA	1 cut(s)	1266
PciSI	GCTCTTC	1 cut(s)	1185
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	6 cut(s)	170, 833, 906, 940, 997, 1133
PkrI	GCNGC	3 cut(s)	64, 455, 1122
PleI	GAGTC	3 cut(s)	407, 482, 755
PpsI	GAGTC	3 cut(s)	407, 482, 755
Psp124BI	GAGCTC	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	770
PspN4I	GGNNCC	2 cut(s)	881, 895
PspPI	GGNCC	2 cut(s)	821, 1202
PsuI	RGATCY	2 cut(s)	196, 868
RseI	CAYNNNNRTG	1 cut(s)	1265
SacI	GAGCTC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	3 cut(s)	495, 785, 1256
SatI	GCNGC	3 cut(s)	63, 454, 1121
Sau3AI	GATC	6 cut(s)	196, 310, 573, 868, 1030, 1269
Sau96I	GGNCC	2 cut(s)	821, 1202
SchI	GAGTC	3 cut(s)	407, 483, 755
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	1204
SfuI	TTCGAA	1 cut(s)	1136
SinI	GGWCC	2 cut(s)	821, 1202
SmiMI	CAYNNNNRTG	1 cut(s)	1265
SpeI	ACTAGT	1 cut(s)	1172
Sse9I	AATT	4 cut(s)	298, 724, 1070, 1138
SsiI	CCGC	7 cut(s)	60, 63, 432, 451, 454, 1118, 1121
SspMI	CTAG	3 cut(s)	557, 944, 1173
SstI	GAGCTC	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	556, 961
TaaI	ACNGT	6 cut(s)	21, 190, 212, 380, 514, 1028
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	3 cut(s)	1002, 1061, 1136
TasI	AATT	4 cut(s)	298, 724, 1070, 1138
TauI	GCSGC	3 cut(s)	65, 456, 1123
TfiI	GAWTC	6 cut(s)	170, 833, 906, 940, 997, 1133
Tru1I	TTAA	3 cut(s)	495, 785, 1256
Tru9I	TTAA	3 cut(s)	495, 785, 1256
TscAI	CASTG	3 cut(s)	508, 1033, 1091
TseFI	GTSAC	2 cut(s)	277, 770
Tsp45I	GTSAC	2 cut(s)	277, 770
TspDTI	ATGAA	7 cut(s)	17, 637, 898, 935, 1082, 1176, 1255
TspGWI	ACGGA	2 cut(s)	229, 1170
TspRI	CASTG	3 cut(s)	508, 1033, 1091
VpaK11BI	GGWCC	2 cut(s)	821, 1202
XapI	RAATTY	2 cut(s)	724, 1138
XmaJI	CCTAGG	1 cut(s)	556
XspI	CTAG	3 cut(s)	557, 944, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.