Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Forward (+)

86819153 .. 86820518

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAACCCCCACCATTACTCCTCACTCTCCTCCACCTCCTCCTCCTCTCCTCCACCACCCTCTCCGCCACCACCCCCAACACCACTCACTCCCGCCCCCCAACTCCATCCCCCACTTCCTCTCCAACCCCCACCACCCCCAACACCACTCACTCCCTTCCCCCAACTCCAACCCCCACTTCCTCTCCAACCCCCACCACTCCTTCCTCAAAAGGCTCATCTTCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATTCCAACTTCCAAAGACCCATGCACTCAGCTCCACTCCAACACCACCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTGTCCTTCACCGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTCCACTTCCTCAACTGCCCCATCGCCCCCATTCGCTTCCCCGCCGATCTCGTCGCCTCCCTCCACTCCTTCTCCGCCGTCAGCAGCCTCCGCCACCTCACCGGCGTCTGGCTCTCCCGCCTCCAGAACCTCACCGATCTAACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTAATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACCATCTCCCATGCCAACCTCACCGGTAATGTTCCCAAACACTTGAATCTCAACTTGACCCAGATCGACTTTTCGGGGGTCGTTCCTTTCAATGTGACATTCATTAGTAAGTTGGCTGTGTTCAAGGTTAGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTCGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACATGGGCTGCCAATGTCGCCTCCTCCGGCGAAAGAGGACAGCTCAGCGGATGACAGCAGTGATTCGGATTATGATGACAGTGATGGGGATGGTGATTCCCAAAATCAGGATCATCATCATGGGCCTAACAAGGTAGTTCTTGGTGTGGCAATTGGGCTTTCTTCCCTTGTCTTCCTCATAGTTTTCTTGATTCTTCTATCAAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

354

Amino Acids

37.7

Weight (kDa)

8.17

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	966
AcyI	GRCGYC	3 cut(s)	321, 378, 531
AfiI	CCNNNNNNNGG	2 cut(s)	534, 955
AgeI	ACCGGT	1 cut(s)	665
AgsI	TTSAA	5 cut(s)	625, 688, 733, 766, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	4 cut(s)	295, 631, 826, 891
AluI	AGCT	4 cut(s)	295, 631, 826, 891
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	966
AoxI	GGCC	2 cut(s)	598, 971
ApeKI	GCWGC	2 cut(s)	510, 856
AsiGI	ACCGGT	1 cut(s)	665
AspS9I	GGNCC	3 cut(s)	599, 636, 971
AsuHPI	GGTGA	7 cut(s)	346, 385, 517, 550, 634, 655, 953
AvaII	GGWCC	1 cut(s)	636
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	1012
BbvI	GCAGC	2 cut(s)	522, 843
BccI	CCATC	5 cut(s)	115, 455, 653, 926, 932
BceAI	ACGGC	1 cut(s)	488
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	227
BisI	GCNGC	3 cut(s)	324, 511, 857
BlpI	GCTNAGC	1 cut(s)	892
BlsI	GCNGC	3 cut(s)	325, 512, 858
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	599, 636, 971
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	1012
BplI	GAGNNNNNCTC	2 cut(s)	875, 907
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	892
BpuEI	CTTGAG	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	963
BsaHI	GRCGYC	3 cut(s)	321, 378, 531
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	9 cut(s)	33, 106, 136, 169, 199, 332, 362, 482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 955
Bse118I	RCCGGY	2 cut(s)	527, 665
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	1 cut(s)	963
BseGI	GGATG	3 cut(s)	107, 904, 943
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	2 cut(s)	534, 955
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	3 cut(s)	305, 646, 906
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	8 cut(s)	11, 20, 29, 32, 35, 40, 335, 861
BseXI	GCAGC	2 cut(s)	522, 843
BshFI	GGCC	2 cut(s)	600, 973
BshTI	ACCGGT	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	528, 666, 875
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	534, 955
BsmAI	GTCTC	1 cut(s)	577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	600, 973
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	472, 562, 705, 958
Bsp1720I	GCTNAGC	1 cut(s)	892
BspANI	GGCC	2 cut(s)	600, 973
BspCNI	CTCAG	3 cut(s)	304, 645, 905
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	966
BsrDI	GCAATG	1 cut(s)	831
BsrFI	RCCGGY	2 cut(s)	527, 665
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	2 cut(s)	527, 665
BssMI	GATC	4 cut(s)	472, 562, 705, 958
BssNI	GRCGYC	3 cut(s)	321, 378, 531
Bst4CI	ACNGT	2 cut(s)	571, 929
BstACI	GRCGYC	3 cut(s)	321, 378, 531
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstDEI	CTNAG	3 cut(s)	291, 632, 892
BstF5I	GGATG	3 cut(s)	107, 904, 943
BstKTI	GATC	4 cut(s)	475, 565, 708, 961
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	472, 562, 705, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	516, 789, 865
BstV1I	GCAGC	2 cut(s)	522, 843
BstV2I	GAAGAC	1 cut(s)	1012
BsuRI	GGCC	2 cut(s)	600, 973
BtgZI	GCGATG	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	107, 904, 943
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	3 cut(s)	601, 913, 934
Cfr10I	RCCGGY	2 cut(s)	527, 665
Cfr13I	GGNCC	3 cut(s)	599, 636, 971
CseI	GACGC	2 cut(s)	329, 520
CspAI	ACCGGT	1 cut(s)	665
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	4 cut(s)	285, 653, 851, 968
DdeI	CTNAG	3 cut(s)	291, 632, 892
DpnI	GATC	4 cut(s)	474, 564, 707, 960
DpnII	GATC	4 cut(s)	472, 562, 705, 958
EciI	GGCGGA	4 cut(s)	55, 326, 490, 506
Eco24I	GRGCYC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	636
EcoT38I	GRGCYC	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	577
FaeI	CATG	4 cut(s)	288, 656, 854, 971
FaiI	YATR	6 cut(s)	286, 654, 852, 921, 969, 1028
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	4 cut(s)	284, 652, 850, 967
FauI	CCCGC	3 cut(s)	101, 475, 551
Fnu4HI	GCNGC	3 cut(s)	324, 511, 857
FokI	GGATG	3 cut(s)	94, 911, 950
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	324, 511, 857
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	3 cut(s)	324, 511, 857
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	600, 973
HapII	CCGG	3 cut(s)	528, 666, 875
HgaI	GACGC	2 cut(s)	329, 520
Hin1I	GRCGYC	3 cut(s)	321, 378, 531
Hin1II	CATG	4 cut(s)	288, 656, 854, 971
HinfI	GANTC	4 cut(s)	688, 911, 944, 1039
HpaII	CCGG	3 cut(s)	528, 666, 875
HphI	GGTGA	7 cut(s)	346, 385, 517, 550, 634, 655, 953
Hpy188I	TCNGA	2 cut(s)	373, 916
Hpy188III	TCNNGA	4 cut(s)	227, 550, 956, 1036
Hpy99I	CGWCG	6 cut(s)	323, 377, 380, 383, 482, 817
HpyAV	CCTTC	5 cut(s)	167, 213, 343, 400, 505
HpyCH4III	ACNGT	2 cut(s)	571, 929
HpyCH4IV	ACGT	2 cut(s)	378, 579
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	516, 789, 865
HpyF3I	CTNAG	3 cut(s)	291, 632, 892
HpySE526I	ACGT	2 cut(s)	378, 579
Hsp92I	GRCGYC	3 cut(s)	321, 378, 531
Hsp92II	CATG	4 cut(s)	288, 656, 854, 971
Kzo9I	GATC	4 cut(s)	472, 562, 705, 958
LmnI	GCTCC	3 cut(s)	300, 374, 841
Lsp1109I	GCAGC	2 cut(s)	522, 843
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	378, 579
MaeIII	GTNAC	2 cut(s)	640, 736
MalI	GATC	4 cut(s)	474, 564, 707, 960
MboI	GATC	4 cut(s)	472, 562, 705, 958
MboII	GAAGA	5 cut(s)	213, 637, 1002, 1012, 1034
MfeI	CAATTG	1 cut(s)	999
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	4 cut(s)	609, 784, 818, 999
MmeI	TCCRAC	7 cut(s)	149, 194, 212, 293, 327, 396, 600
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	3 cut(s)	528, 666, 875
MunI	CAATTG	1 cut(s)	999
MwoI	GCNNNNNNNGC	3 cut(s)	516, 789, 865
NdeII	GATC	4 cut(s)	472, 562, 705, 958
NlaIII	CATG	4 cut(s)	288, 656, 854, 971
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	594, 807
NmuCI	GTSAC	2 cut(s)	640, 736
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	688, 911, 944, 1039
PflFI	GACNNNGTC	1 cut(s)	377
PinAI	ACCGGT	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	325, 512, 858
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	599, 636, 971
PsyI	GACNNNGTC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	966
SatI	GCNGC	3 cut(s)	324, 511, 857
Sau3AI	GATC	4 cut(s)	472, 562, 705, 958
Sau96I	GGNCC	3 cut(s)	599, 636, 971
SduI	GDGCHC	1 cut(s)	250
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	609, 784, 818, 999
SspMI	CTAG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	571, 929
TaiI	ACGT	2 cut(s)	381, 582
TaqI	TCGA	2 cut(s)	708, 815
TasI	AATT	4 cut(s)	609, 784, 818, 999
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	4 cut(s)	688, 911, 944, 1039
TscAI	CASTG	3 cut(s)	601, 913, 934
TseFI	GTSAC	2 cut(s)	640, 736
TseI	GCWGC	2 cut(s)	510, 856
Tsp45I	GTSAC	2 cut(s)	640, 736
TspDTI	ATGAA	1 cut(s)	733
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	3 cut(s)	601, 913, 934
Tth111I	GACNNNGTC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	636
XbaI	TCTAGA	1 cut(s)	226
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.