Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

7240154 .. 7241488

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG084000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAACCACCACCATTACTCCTCACTCTCCTCCACCTCCTCCTCCTCTCCTCCACCACCCTCTCCGCCACCAACACCACTCACTCCCGCCCCCCAACTCCATCCCCCAACACCACTCACTCCCTCCCCCCAACTCCATCCCCCACCTCCTCTCCAACCCCCACCGCTCCTTCCTCAAAAGGCTCATCTTCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATCCCAACTTCCAAAGACCCATGCACTCAGCTCCACTCCAACACCACCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTGTCCTTCACCGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTCCACTTCCTCAACTGCCCCATCGCCCCCATTCGCTTCCCCGCCGATCTCGTCGCCTCCCTCCACTCCTTCTCCGCCGTCAGCAGCCTCCGCCACCTCACCGGCGTCTGGCTCTCCCGCCTCCAGAACCTCACCGATCTAACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTAATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACTATCTCCCATGCCAACCTCACCGGTAATGTTCCCAAACACTTGAATCTCAACTTGACCCAGATCGACTTTTCCGGTAATAAGCTCGAGGGAAGAATACCCAGTTCCATTACTATACTCGAAAACCTCGAAAGCTTGAATCTTTCCTCCAATACACTCAATGGCGAAATACCCACTTCGTTTGGGGACCTCATATCCCTCAGAAATGTCTCCCTTGCTTCGAATTTGCTATCTGGGCCGATACCCGAGTCGATTTCAGCCATTCCCGGCTTGGTTCATCTTGATCTGAGCTCGAATCAGCTCAATGGCACAATCCCCAAGTTCCTTTCCGATATGAAGGGCTTGAAATTCTTGAATCTGGCCAACAATAACTTCCAGGGGGTCGTTCCTTTCAATGTGTCATTCATTAGTAAGTTGGCTTTGTTCAAGATTAGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTCGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACATGGGCTGCCAATGTCGCCTCCTCCGGCGAAAGAGGACAGTTCAGCGGATGACAGCAGTGATTCGGATTATGATGACAGTGATGGGGATGGTGATTCCCAAAATCAGGATCATCATCATGGGCCTAATAAGGTAGTTCTTGGTGTGGCAATTGGGCTTTCTTCCCTTGTCTTCCTCATAGTTTTCTTGATTCTTCTGTCAAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

444

Amino Acids

47.35

Weight (kDa)

7.26

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	245 - 304	1.3e-07	Leucine rich repeat
LRR_8	PF13855	269 - 328	5.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccBSI	CCGCTC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	1236
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	2 cut(s)	832, 956
AcyI	GRCGYC	3 cut(s)	288, 345, 498
AfiI	CCNNNNNNNGG	2 cut(s)	501, 1225
AgeI	ACCGGT	1 cut(s)	632
AgsI	TTSAA	8 cut(s)	592, 655, 748, 955, 964, 1003, 1036, 1093
AjnI	CCWGG	1 cut(s)	984
AjuI	GAANNNNNNNTTGG	2 cut(s)	965, 997
AluBI	AGCT	7 cut(s)	262, 598, 694, 744, 900, 910, 1096
AluI	AGCT	7 cut(s)	262, 598, 694, 744, 900, 910, 1096
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	2 cut(s)	544, 823
AlwI	GGATC	1 cut(s)	1236
Ama87I	CYCGRG	2 cut(s)	695, 854
AoxI	GGCC	4 cut(s)	565, 845, 969, 1241
ApeKI	GCWGC	2 cut(s)	477, 1126
ApoI	RAATTY	2 cut(s)	832, 956
AsiGI	ACCGGT	1 cut(s)	632
AspS9I	GGNCC	5 cut(s)	566, 603, 796, 845, 1241
AsuC2I	CCSGG	1 cut(s)	876
AsuHPI	GGTGA	6 cut(s)	313, 352, 484, 517, 622, 1223
AsuII	TTCGAA	1 cut(s)	830
AvaI	CYCGRG	2 cut(s)	695, 854
AvaII	GGWCC	2 cut(s)	603, 796
BaeI	ACNNNNGTAYC	2 cut(s)	842, 875
BalI	TGGCCA	1 cut(s)	971
BanII	GRGCYC	2 cut(s)	217, 902
BbsI	GAAGAC	1 cut(s)	1282
Bbv12I	GWGCWC	1 cut(s)	902
BbvI	GCAGC	2 cut(s)	489, 1113
BccI	CCATC	5 cut(s)	109, 145, 422, 1196, 1202
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	986
BcnI	CCSGG	1 cut(s)	876
BcoDI	GTCTC	2 cut(s)	544, 823
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	291, 478, 1127
BlsI	GCNGC	3 cut(s)	292, 479, 1128
Bme1390I	CCNGG	2 cut(s)	876, 986
Bme18I	GGWCC	2 cut(s)	603, 796
BmeT110I	CYCGRG	2 cut(s)	695, 854
BmgT120I	GGNCC	5 cut(s)	566, 603, 796, 845, 1241
BmiI	GGNNCC	2 cut(s)	6, 797
BmrFI	CCNGG	2 cut(s)	876, 986
BmrI	ACTGGG	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	1282
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	599
Bpu14I	TTCGAA	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaHI	GRCGYC	3 cut(s)	288, 345, 498
BsaJI	CCNNGG	1 cut(s)	985
BsaWI	WCCGGW	2 cut(s)	632, 683
BsaXI	ACNNNNNCTCC	7 cut(s)	33, 136, 166, 299, 329, 449, 479
Bsc4I	CCNNNNNNNGG	2 cut(s)	501, 1225
Bse118I	RCCGGY	2 cut(s)	494, 632
Bse1I	ACTGG	2 cut(s)	561, 711
Bse3DI	GCAATG	1 cut(s)	1101
Bse8I	GATNNNNATC	1 cut(s)	1233
BseBI	CCWGG	1 cut(s)	986
BseDI	CCNNGG	1 cut(s)	985
BseGI	GGATG	5 cut(s)	101, 137, 231, 1174, 1213
BseJI	GATNNNNATC	1 cut(s)	1233
BseLI	CCNNNNNNNGG	2 cut(s)	501, 1225
BseMI	GCAATG	1 cut(s)	1101
BseMII	CTCAG	4 cut(s)	272, 613, 823, 887
BseNI	ACTGG	2 cut(s)	561, 711
BseRI	GAGGAG	9 cut(s)	11, 20, 29, 32, 35, 40, 139, 302, 1131
BseXI	GCAGC	2 cut(s)	489, 1113
BshFI	GGCC	4 cut(s)	567, 847, 971, 1243
BshTI	ACCGGT	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	902
BsiHKCI	CYCGRG	2 cut(s)	695, 854
BsiSI	CCGG	5 cut(s)	495, 633, 684, 876, 1145
BslFI	GGGAC	2 cut(s)	358, 809
BslI	CCNNNNNNNGG	2 cut(s)	501, 1225
BsmAI	GTCTC	2 cut(s)	544, 823
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	2 cut(s)	358, 809
BsnI	GGCC	4 cut(s)	567, 847, 971, 1243
BsoBI	CYCGRG	2 cut(s)	695, 854
Bsp119I	TTCGAA	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	217, 902
Bsp143I	GATC	5 cut(s)	439, 529, 672, 892, 1228
BspANI	GGCC	4 cut(s)	567, 847, 971, 1243
BspCNI	CTCAG	4 cut(s)	271, 612, 822, 888
BspLI	GGNNCC	2 cut(s)	6, 797
BspPI	GGATC	1 cut(s)	1236
BspT104I	TTCGAA	1 cut(s)	830
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	1101
BsrFI	RCCGGY	2 cut(s)	494, 632
BsrI	ACTGG	2 cut(s)	561, 711
BssAI	RCCGGY	2 cut(s)	494, 632
BssECI	CCNNGG	1 cut(s)	985
BssMI	GATC	5 cut(s)	439, 529, 672, 892, 1228
BssNI	GRCGYC	3 cut(s)	288, 345, 498
Bst2UI	CCWGG	1 cut(s)	986
Bst4CI	ACNGT	3 cut(s)	538, 1160, 1199
BstACI	GRCGYC	3 cut(s)	288, 345, 498
BstAPI	GCANNNNNTGC	1 cut(s)	1059
BstBI	TTCGAA	1 cut(s)	830
BstDEI	CTNAG	4 cut(s)	258, 599, 809, 896
BstF5I	GGATG	5 cut(s)	101, 137, 231, 1174, 1213
BstKTI	GATC	5 cut(s)	442, 532, 675, 895, 1231
BstMAI	GTCTC	2 cut(s)	544, 823
BstMBI	GATC	5 cut(s)	439, 529, 672, 892, 1228
BstMWI	GCNNNNNNNGC	4 cut(s)	483, 844, 1059, 1135
BstNI	CCWGG	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	874, 984
BstV1I	GCAGC	2 cut(s)	489, 1113
BstV2I	GAAGAC	1 cut(s)	1282
BsuRI	GGCC	4 cut(s)	567, 847, 971, 1243
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	5 cut(s)	101, 137, 231, 1174, 1213
BtsI	GCAGTG	1 cut(s)	1183
BtsIMutI	CAGTG	3 cut(s)	568, 1183, 1204
Cfr10I	RCCGGY	2 cut(s)	494, 632
Cfr13I	GGNCC	5 cut(s)	566, 603, 796, 845, 1241
CseI	GACGC	2 cut(s)	296, 487
CspAI	ACCGGT	1 cut(s)	632
CspCI	CAANNNNNGTGG	4 cut(s)	544, 579, 772, 807
CviAII	CATG	4 cut(s)	252, 620, 1121, 1238
DdeI	CTNAG	4 cut(s)	258, 599, 809, 896
DpnI	GATC	5 cut(s)	441, 531, 674, 894, 1230
DpnII	GATC	5 cut(s)	439, 529, 672, 892, 1228
EaeI	YGGCCR	1 cut(s)	969
EciI	GGCGGA	4 cut(s)	55, 293, 457, 473
Ecl136II	GAGCTC	1 cut(s)	900
Eco24I	GRGCYC	2 cut(s)	217, 902
Eco47I	GGWCC	2 cut(s)	603, 796
Eco53kI	GAGCTC	1 cut(s)	900
Eco88I	CYCGRG	2 cut(s)	695, 854
EcoICRI	GAGCTC	1 cut(s)	900
EcoO109I	RGGNCCY	1 cut(s)	796
EcoRII	CCWGG	1 cut(s)	984
EcoT38I	GRGCYC	2 cut(s)	217, 902
Esp3I	CGTCTC	1 cut(s)	544
FaeI	CATG	4 cut(s)	255, 623, 1124, 1241
FaiI	YATR	9 cut(s)	253, 621, 725, 803, 944, 1122, 1191, 1239, 1298
FaqI	GGGAC	2 cut(s)	358, 809
FatI	CATG	4 cut(s)	251, 619, 1120, 1237
FauI	CCCGC	3 cut(s)	95, 442, 518
Fnu4HI	GCNGC	3 cut(s)	291, 478, 1127
FokI	GGATG	5 cut(s)	88, 124, 218, 1181, 1220
FriOI	GRGCYC	2 cut(s)	217, 902
Fsp4HI	GCNGC	3 cut(s)	291, 478, 1127
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	291, 478, 1127
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	567, 847, 971, 1243
HapII	CCGG	5 cut(s)	495, 633, 684, 876, 1145
HgaI	GACGC	2 cut(s)	296, 487
Hin1I	GRCGYC	3 cut(s)	288, 345, 498
Hin1II	CATG	4 cut(s)	255, 623, 1124, 1241
HindIII	AAGCTT	1 cut(s)	742
HinfI	GANTC	8 cut(s)	655, 748, 857, 904, 964, 1181, 1214, 1309
HpaII	CCGG	5 cut(s)	495, 633, 684, 876, 1145
HphI	GGTGA	6 cut(s)	313, 352, 484, 517, 622, 1223
Hpy188I	TCNGA	5 cut(s)	340, 812, 897, 940, 1186
Hpy188III	TCNNGA	7 cut(s)	194, 517, 890, 961, 1036, 1226, 1306
Hpy99I	CGWCG	6 cut(s)	290, 344, 347, 350, 449, 1087
HpyAV	CCTTC	5 cut(s)	180, 310, 367, 472, 940
HpyCH4III	ACNGT	3 cut(s)	538, 1160, 1199
HpyCH4IV	ACGT	2 cut(s)	345, 546
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	483, 844, 1059, 1135
HpyF3I	CTNAG	4 cut(s)	258, 599, 809, 896
HpySE526I	ACGT	2 cut(s)	345, 546
Hsp92I	GRCGYC	3 cut(s)	288, 345, 498
Hsp92II	CATG	4 cut(s)	255, 623, 1124, 1241
Kzo9I	GATC	5 cut(s)	439, 529, 672, 892, 1228
LmnI	GCTCC	4 cut(s)	172, 267, 341, 1111
Lsp1109I	GCAGC	2 cut(s)	489, 1113
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	345, 546
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	5 cut(s)	441, 531, 674, 894, 1230
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	5 cut(s)	439, 529, 672, 892, 1228
MboII	GAAGA	6 cut(s)	180, 604, 714, 1272, 1282, 1304
MfeI	CAATTG	1 cut(s)	1269
MhlI	GDGCHC	2 cut(s)	217, 902
MlsI	TGGCCA	1 cut(s)	971
MluCI	AATT	6 cut(s)	576, 832, 956, 1054, 1088, 1269
MluNI	TGGCCA	1 cut(s)	971
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	4 cut(s)	179, 294, 363, 567
Mox20I	TGGCCA	1 cut(s)	971
MscI	TGGCCA	1 cut(s)	971
MslI	CAYNNNNRTG	1 cut(s)	1236
Msp20I	TGGCCA	1 cut(s)	971
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	5 cut(s)	495, 633, 684, 876, 1145
MspR9I	CCNGG	2 cut(s)	876, 986
MunI	CAATTG	1 cut(s)	1269
MvaI	CCWGG	1 cut(s)	986
MwoI	GCNNNNNNNGC	4 cut(s)	483, 844, 1059, 1135
NciI	CCSGG	1 cut(s)	876
NdeII	GATC	5 cut(s)	439, 529, 672, 892, 1228
NlaIII	CATG	4 cut(s)	255, 623, 1124, 1241
NlaIV	GGNNCC	2 cut(s)	6, 797
NmeAIII	GCCGAG	2 cut(s)	561, 1077
NmuCI	GTSAC	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	830
PaeR7I	CTCGAG	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	2 cut(s)	735, 1079
PfeI	GAWTC	7 cut(s)	655, 748, 904, 964, 1181, 1214, 1309
PflFI	GACNNNGTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	292, 479, 1128
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PpuMI	RGGWCCY	1 cut(s)	796
Psp124BI	GAGCTC	1 cut(s)	902
Psp5II	RGGWCCY	1 cut(s)	796
Psp6I	CCWGG	1 cut(s)	984
PspGI	CCWGG	1 cut(s)	984
PspN4I	GGNNCC	2 cut(s)	6, 797
PspPI	GGNCC	5 cut(s)	566, 603, 796, 845, 1241
PspPPI	RGGWCCY	1 cut(s)	796
PspXI	VCTCGAGB	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	1236
SacI	GAGCTC	1 cut(s)	902
SatI	GCNGC	3 cut(s)	291, 478, 1127
Sau3AI	GATC	5 cut(s)	439, 529, 672, 892, 1228
Sau96I	GGNCC	5 cut(s)	566, 603, 796, 845, 1241
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	876, 986
SduI	GDGCHC	2 cut(s)	217, 902
Sfr274I	CTCGAG	1 cut(s)	695
SfuI	TTCGAA	1 cut(s)	830
SgrAI	CRCCGGYG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	603, 796
SlaI	CTCGAG	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	1236
SmlI	CTYRAG	2 cut(s)	368, 695
SmoI	CTYRAG	2 cut(s)	368, 695
Sse9I	AATT	6 cut(s)	576, 832, 956, 1054, 1088, 1269
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	902
StyD4I	CCNGG	2 cut(s)	874, 984
TaaI	ACNGT	3 cut(s)	538, 1160, 1199
TaiI	ACGT	2 cut(s)	348, 549
TaqI	TCGA	8 cut(s)	675, 696, 729, 738, 830, 860, 902, 1085
TasI	AATT	6 cut(s)	576, 832, 956, 1054, 1088, 1269
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	7 cut(s)	655, 748, 904, 964, 1181, 1214, 1309
TscAI	CASTG	3 cut(s)	568, 1183, 1204
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	2 cut(s)	477, 1126
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	875, 959, 1003
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	3 cut(s)	568, 1183, 1204
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	603, 796
XapI	RAATTY	2 cut(s)	832, 956
XbaI	TCTAGA	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XhoI	CTCGAG	1 cut(s)	695
XspI	CTAG	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.