Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

3141301 .. 3142516

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAACCACCATTGCTGCCCACTCTGCTTCTCCTCCTCCTCCTCCTCCTCTTCTCCACCACCTTCTCAGCCTCTGCTCCTCCTCTCCGCCCCACTCCATCTCCTACCTCCTCCCCAACCCCACCAAAGTCCACCACCCCCAAAGCCCCATCTCCTACCTCCTCCCCAACCCCCAAAACCCCATCTCCTACCTCCTCCCCAACCCCACCGAAGTCCACCACCCCAAAAACCCCATCTCCTATCTCCTCCCCAACCCCACCAAACTCCTCCACCCCCAAAACCCCATCTTCACCATCTTCCAGCTCTTTAGACCCAAAGCAACTCAGAGCCCTCCAATCTCTCAACATCCCAACCTCCAAAGACCCCTGCACCCAACCCTCCCTCCTCCTCCCCAACACCACTCTCTGCGACTCCTCCAAGCCCTTCCGCCACATCCTCTCCCTCCGCCTTGCCAACTGCTCCGACGACGTCGCTTTGTCCTTCACTGCTCTCAAGTCCCTCTCCACCCTCCAGTCCCTCCAGTTCTTCAAACTGCCCCATTGCCCCTATCCGCTTCCCGGCCGATCTCGGTTGGTTCATGTTGATCTGAGCTCCAATCAGCTGAATGGTACAATTCCAAAGTTCCTCTCTGATATGAAGAGCTTGAAGCACTTGAATCTTGCAAACAATGACTTCCATGGAGTTGTGCCTTTCAATGTGTCATTTATAAACAAATTGGCAGTGTTCAAGATTAGCAGGAACAGCAATTTGTGCTATAACCACTCTGTTTTGTCATCAAAATTGAAGCTTGGGATTTCTCCTTGTGACAAGCATGGATTGCCCATGTCACCTCCTCCGGCCAAAGGCGATTCATCAGCAGAAGACAGCAGTGATTCAGATTATGATGACAGCGATGGGGATGACTCTGATCAGAAGAAGGATCGTCATCATGGGCCAAGTAAGGTTGTTCTTGGTGTGGCCATTGGGCTTTCTTCCATAGTCTTCCTCATTATTTTCTTGGTTCTTCTCTCCAAATGGTGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

342

Amino Acids

36.41

Weight (kDa)

9.29

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AatII	GACGTC	1 cut(s)	471
AciI	CCGC	4 cut(s)	88, 427, 445, 551
AclWI	GGATC	1 cut(s)	927
AcoI	YGGCCR	3 cut(s)	559, 837, 957
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	557, 842
AgsI	TTSAA	6 cut(s)	529, 646, 655, 694, 727, 784
AluBI	AGCT	5 cut(s)	303, 591, 601, 642, 787
AluI	AGCT	5 cut(s)	303, 591, 601, 642, 787
Alw21I	GWGCWC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	927
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	559, 837, 932, 957
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	932
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	282, 819
BalI	TGGCCA	1 cut(s)	959
BanII	GRGCYC	2 cut(s)	331, 593
BbsI	GAAGAC	2 cut(s)	867, 973
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	7 cut(s)	106, 157, 190, 241, 292, 301, 887
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	558
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	932
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	558
BpiI	GAAGAC	2 cut(s)	867, 973
BpmI	CTGGAG	2 cut(s)	494, 503
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 842
Bse1I	ACTGG	2 cut(s)	511, 520
Bse3DI	GCAATG	2 cut(s)	11, 538
Bse8I	GATNNNNATC	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	3 cut(s)	345, 432, 904
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	2 cut(s)	557, 842
BseMI	GCAATG	2 cut(s)	11, 538
BseMII	CTCAG	3 cut(s)	81, 337, 578
BseNI	ACTGG	2 cut(s)	511, 520
BseX3I	CGGCCG	1 cut(s)	559
BseXI	GCAGC	1 cut(s)	3
BsgI	GTGCAG	1 cut(s)	352
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	4 cut(s)	561, 839, 934, 959
BsiEI	CGRYCG	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	2 cut(s)	558, 836
BslFI	GGGAC	2 cut(s)	481, 499
BslI	CCNNNNNNNGG	2 cut(s)	557, 842
BsmFI	GGGAC	2 cut(s)	481, 499
BsnI	GGCC	4 cut(s)	561, 839, 934, 959
Bsp1286I	GDGCHC	2 cut(s)	331, 593
Bsp143I	GATC	4 cut(s)	563, 583, 907, 919
Bsp19I	CCATGG	1 cut(s)	676
BspACI	CCGC	4 cut(s)	88, 427, 445, 551
BspANI	GGCC	4 cut(s)	561, 839, 934, 959
BspCNI	CTCAG	3 cut(s)	80, 336, 579
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	927
BspQI	GCTCTTC	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	11, 538
BsrI	ACTGG	2 cut(s)	511, 520
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	4 cut(s)	563, 583, 907, 919
BssNI	GRCGYC	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	56, 632
BstACI	GRCGYC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	750, 817
BstDEI	CTNAG	3 cut(s)	67, 323, 587
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	345, 432, 904
BstKTI	GATC	4 cut(s)	566, 586, 910, 922
BstMBI	GATC	4 cut(s)	563, 583, 907, 919
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 741, 750, 817
BstSCI	CCNGG	1 cut(s)	556
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	2 cut(s)	867, 973
BstZI	CGGCCG	1 cut(s)	559
BsuRI	GGCC	4 cut(s)	561, 839, 934, 959
BtgI	CCRYGG	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	906
BtsCI	GGATG	3 cut(s)	345, 432, 904
BtsI	GCAGTG	3 cut(s)	483, 726, 874
BtsIMutI	CAGTG	3 cut(s)	483, 726, 874
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	609
CspCI	CAANNNNNGTGG	1 cut(s)	1000
CviAII	CATG	5 cut(s)	578, 677, 812, 823, 929
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	67, 323, 587
DpnI	GATC	4 cut(s)	565, 585, 909, 921
DpnII	GATC	4 cut(s)	563, 583, 907, 919
EaeI	YGGCCR	3 cut(s)	559, 837, 957
EagI	CGGCCG	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	56, 632
EarI	CTCTTC	2 cut(s)	56, 632
EciI	GGCGGA	3 cut(s)	77, 416, 434
Ecl136II	GAGCTC	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	2 cut(s)	331, 593
Eco52I	CGGCCG	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	2 cut(s)	331, 593
ErhI	CCWWGG	1 cut(s)	676
FaeI	CATG	5 cut(s)	581, 680, 815, 826, 932
FaqI	GGGAC	2 cut(s)	481, 499
FatI	CATG	5 cut(s)	577, 676, 811, 822, 928
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	3 cut(s)	332, 419, 911
FriOI	GRGCYC	2 cut(s)	331, 593
Fsp4HI	GCNGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	2 cut(s)	494, 503
HaeIII	GGCC	4 cut(s)	561, 839, 934, 959
HapII	CCGG	2 cut(s)	558, 836
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	581, 680, 815, 826, 932
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	5 cut(s)	410, 655, 848, 872, 902
HpaII	CCGG	2 cut(s)	558, 836
HphI	GGTGA	2 cut(s)	282, 819
Hpy166II	GTNNAC	2 cut(s)	132, 216
Hpy188I	TCNGA	7 cut(s)	326, 463, 588, 631, 877, 907, 912
Hpy188III	TCNNGA	1 cut(s)	727
Hpy8I	GTNNAC	2 cut(s)	132, 216
Hpy99I	CGWCG	3 cut(s)	467, 470, 473
HpyAV	CCTTC	4 cut(s)	73, 433, 490, 910
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	2 cut(s)	369, 662
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 741, 750, 817
HpyF3I	CTNAG	3 cut(s)	67, 323, 587
HpySE526I	ACGT	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	5 cut(s)	581, 680, 815, 826, 932
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	4 cut(s)	563, 583, 907, 919
LguI	GCTCTTC	1 cut(s)	632
LmnI	GCTCC	3 cut(s)	82, 464, 596
LpnPI	CCDG	7 cut(s)	313, 379, 524, 533, 571, 721, 849
Lsp1109I	GCAGC	1 cut(s)	3
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	803, 825
MalI	GATC	4 cut(s)	565, 585, 909, 921
MboI	GATC	4 cut(s)	563, 583, 907, 919
MhlI	GDGCHC	2 cut(s)	331, 593
MlsI	TGGCCA	1 cut(s)	959
MluCI	AATT	4 cut(s)	612, 713, 745, 779
MluNI	TGGCCA	1 cut(s)	959
MlyI	GAGTC	2 cut(s)	404, 896
MmeI	TCCRAC	1 cut(s)	486
Mox20I	TGGCCA	1 cut(s)	959
MscI	TGGCCA	1 cut(s)	959
Msp20I	TGGCCA	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	2 cut(s)	558, 836
MspR9I	CCNGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	4 cut(s)	25, 741, 750, 817
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	676
NdeII	GATC	4 cut(s)	563, 583, 907, 919
NlaIII	CATG	5 cut(s)	581, 680, 815, 826, 932
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	803, 825
PciSI	GCTCTTC	1 cut(s)	632
PfeI	GAWTC	3 cut(s)	655, 848, 872
PflFI	GACNNNGTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	2 cut(s)	404, 896
PpsI	GAGTC	2 cut(s)	404, 896
PsiI	TTATAA	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	932
PstNI	CAGNNNCTG	1 cut(s)	74
PsyI	GACNNNGTC	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	632
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	4 cut(s)	563, 583, 907, 919
Sau96I	GGNCC	1 cut(s)	932
SchI	GAGTC	2 cut(s)	404, 896
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	2 cut(s)	331, 593
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	612, 713, 745, 779
SsiI	CCGC	4 cut(s)	88, 427, 445, 551
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	676
TaiI	ACGT	1 cut(s)	471
TasI	AATT	4 cut(s)	612, 713, 745, 779
TfiI	GAWTC	3 cut(s)	655, 848, 872
TscAI	CASTG	3 cut(s)	490, 726, 874
TseFI	GTSAC	2 cut(s)	803, 825
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	2 cut(s)	803, 825
TspDTI	ATGAA	3 cut(s)	566, 650, 840
TspRI	CASTG	3 cut(s)	490, 726, 874
Tth111I	GACNNNGTC	1 cut(s)	467
ZraI	GACGTC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.