Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

7732200 .. 7735229

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG097400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAACCCCCACCATTACTCCTCACTCTCCTCCACCTCCTCCTCCTCTCCTCCACCACCCTGTCCGCCACCACCCCCAACACCACTCACTCCCGCCCCCCAACTCCATCCCCCAACACCACTCACTCCCTCCCCCCAACTCCATCCCCCACTTCCTCTCCAACCCCCACCACCCCCTCCGCTCCTTCCTCAAAAGGCTCCTCTTCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATCCCAACTTCCAAAGACCCATGCACTCAGCTCCACTCCAACACCACCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTGTCCTTCACCGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTCCACTTCCTCAACTGCCCCATCGCCCCCATTCGCTTCCCCGCCGATCTCCTCGCCTCCCTCCACTCCTTCTCCGCCGTCAGCAGCCTCCGCCACCTCACCGGCGTCTGGCTCTCCCGCCTCCAGAACCTCACCGATCTAACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTAATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACCATCTCCCATGCCAACCTCACCGGTAATGTTCCCAAACACTTGAATCTCAACTTGACCCAGATCGACTTTTCGGGTAATAAGCTCGAGGGAAGAATACCCAGTTCCATTACTATACTCGAAAACCTCGAAAGCTTGAATCTTTCTTCCAATACACTCAATGGCGAAATACCCACTTCGTTTGGGGACCTCATATCCCTCAGAAATGTCTCCCTTGCTTCGAATTTGCTATCTGGGCCGATACCCGAGTCGATTTCAGCCATTCCCGGCTTGGTTCATCTTGATCTGAGCTCGAATCAGCTCAATGGCACAATCCCCAAGTTCCTTTCGGATATGAAGAGCTTGAAATTCTTGAATCTGGCCAACAATAACTTCCAGGGGGTCGTTCCTTTCAATGTGTCATTCATTAGTAAGTTGGCTTTGTTCAAGATTAGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTCGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACATGGGCTGCCAATGTCGCCTCCTCCGGCGAAAGAGGATAGTTCAGCGGATGACAGCAGTGATTCGGATTATGATGACAGTGATGGGGATAGTTCCCAAAACCAGGATCATCATCATGGGCCTAATAAGGTAGTTCTTGGTGTGGCAATTGGGCTTTCTTCCCTTGTCTTCCTCATAGTTTTCTTGATTCTTCTATCAAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

448

Amino Acids

47.79

Weight (kDa)

7.72

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	101 - 353	1.3e-06	Leucine-rich repeat region
LRR_8	PF13855	250 - 309	1.5e-07	Leucine rich repeat
LRR_8	PF13855	274 - 333	2.3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	1248
AcoI	YGGCCR	1 cut(s)	984
AcsI	RAATTY	2 cut(s)	847, 971
AcyI	GRCGYC	3 cut(s)	303, 360, 513
AfiI	CCNNNNNNNGG	2 cut(s)	516, 1237
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	8 cut(s)	607, 670, 763, 970, 979, 1018, 1051, 1108
AjnI	CCWGG	2 cut(s)	999, 1236
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	8 cut(s)	277, 613, 709, 759, 915, 925, 966, 1111
AluI	AGCT	8 cut(s)	277, 613, 709, 759, 915, 925, 966, 1111
Alw21I	GWGCWC	1 cut(s)	917
Alw26I	GTCTC	2 cut(s)	559, 838
AlwI	GGATC	1 cut(s)	1248
Ama87I	CYCGRG	2 cut(s)	710, 869
AoxI	GGCC	4 cut(s)	580, 860, 984, 1253
ApeKI	GCWGC	2 cut(s)	492, 1141
ApoI	RAATTY	2 cut(s)	847, 971
AsiGI	ACCGGT	1 cut(s)	647
AspS9I	GGNCC	5 cut(s)	581, 618, 811, 860, 1253
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	6 cut(s)	328, 367, 499, 532, 616, 637
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	2 cut(s)	710, 869
AvaII	GGWCC	2 cut(s)	618, 811
BaeI	ACNNNNGTAYC	2 cut(s)	857, 890
BalI	TGGCCA	1 cut(s)	986
BanII	GRGCYC	2 cut(s)	232, 917
BbsI	GAAGAC	1 cut(s)	1294
Bbv12I	GWGCWC	1 cut(s)	917
BbvI	GCAGC	2 cut(s)	504, 1128
BccI	CCATC	5 cut(s)	115, 151, 437, 635, 1211
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	2 cut(s)	1001, 1238
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	559, 838
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	306, 493, 1142
BlsI	GCNGC	3 cut(s)	307, 494, 1143
Bme1390I	CCNGG	3 cut(s)	891, 1001, 1238
Bme18I	GGWCC	2 cut(s)	618, 811
BmeT110I	CYCGRG	2 cut(s)	710, 869
BmgT120I	GGNCC	5 cut(s)	581, 618, 811, 860, 1253
BmiI	GGNNCC	3 cut(s)	6, 199, 812
BmrFI	CCNGG	3 cut(s)	891, 1001, 1238
BmrI	ACTGGG	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	1294
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	1245
BsaHI	GRCGYC	3 cut(s)	303, 360, 513
BsaJI	CCNNGG	1 cut(s)	1000
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	7 cut(s)	33, 142, 172, 314, 344, 464, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 1237
Bse118I	RCCGGY	2 cut(s)	509, 647
Bse1I	ACTGG	2 cut(s)	576, 726
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	1245
BseBI	CCWGG	2 cut(s)	1001, 1238
BseDI	CCNNGG	1 cut(s)	1000
BseGI	GGATG	4 cut(s)	107, 143, 246, 1189
BseJI	GATNNNNATC	1 cut(s)	1245
BseLI	CCNNNNNNNGG	2 cut(s)	516, 1237
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	4 cut(s)	287, 628, 838, 902
BseNI	ACTGG	2 cut(s)	576, 726
BseXI	GCAGC	2 cut(s)	504, 1128
BshFI	GGCC	4 cut(s)	582, 862, 986, 1255
BshTI	ACCGGT	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	917
BsiHKCI	CYCGRG	2 cut(s)	710, 869
BsiSI	CCGG	4 cut(s)	510, 648, 891, 1160
BslFI	GGGAC	2 cut(s)	373, 824
BslI	CCNNNNNNNGG	2 cut(s)	516, 1237
BsmAI	GTCTC	2 cut(s)	559, 838
BsmBI	CGTCTC	1 cut(s)	559
BsmFI	GGGAC	2 cut(s)	373, 824
BsnI	GGCC	4 cut(s)	582, 862, 986, 1255
BsoBI	CYCGRG	2 cut(s)	710, 869
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	232, 917
Bsp143I	GATC	5 cut(s)	454, 544, 687, 907, 1240
BspANI	GGCC	4 cut(s)	582, 862, 986, 1255
BspCNI	CTCAG	4 cut(s)	286, 627, 837, 903
BspLI	GGNNCC	3 cut(s)	6, 199, 812
BspPI	GGATC	1 cut(s)	1248
BspQI	GCTCTTC	1 cut(s)	956
BspT104I	TTCGAA	1 cut(s)	845
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	2 cut(s)	509, 647
BsrI	ACTGG	2 cut(s)	576, 726
BssAI	RCCGGY	2 cut(s)	509, 647
BssECI	CCNNGG	1 cut(s)	1000
BssMI	GATC	5 cut(s)	454, 544, 687, 907, 1240
BssNI	GRCGYC	3 cut(s)	303, 360, 513
Bst2UI	CCWGG	2 cut(s)	1001, 1238
Bst4CI	ACNGT	2 cut(s)	553, 1214
Bst6I	CTCTTC	2 cut(s)	208, 956
BstACI	GRCGYC	3 cut(s)	303, 360, 513
BstAPI	GCANNNNNTGC	1 cut(s)	1074
BstBI	TTCGAA	1 cut(s)	845
BstDEI	CTNAG	4 cut(s)	273, 614, 824, 911
BstF5I	GGATG	4 cut(s)	107, 143, 246, 1189
BstKTI	GATC	5 cut(s)	457, 547, 690, 910, 1243
BstMAI	GTCTC	2 cut(s)	559, 838
BstMBI	GATC	5 cut(s)	454, 544, 687, 907, 1240
BstMWI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
BstNI	CCWGG	2 cut(s)	1001, 1238
BstSCI	CCNGG	3 cut(s)	889, 999, 1236
BstV1I	GCAGC	2 cut(s)	504, 1128
BstV2I	GAAGAC	1 cut(s)	1294
BsuRI	GGCC	4 cut(s)	582, 862, 986, 1255
BtgZI	GCGATG	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	107, 143, 246, 1189
BtsI	GCAGTG	1 cut(s)	1198
BtsIMutI	CAGTG	3 cut(s)	583, 1198, 1219
Cfr10I	RCCGGY	2 cut(s)	509, 647
Cfr13I	GGNCC	5 cut(s)	581, 618, 811, 860, 1253
CseI	GACGC	2 cut(s)	311, 502
CspAI	ACCGGT	1 cut(s)	647
CspCI	CAANNNNNGTGG	4 cut(s)	559, 594, 787, 822
CviAII	CATG	4 cut(s)	267, 635, 1136, 1250
DdeI	CTNAG	4 cut(s)	273, 614, 824, 911
DpnI	GATC	5 cut(s)	456, 546, 689, 909, 1242
DpnII	GATC	5 cut(s)	454, 544, 687, 907, 1240
EaeI	YGGCCR	1 cut(s)	984
Eam1104I	CTCTTC	2 cut(s)	208, 956
EarI	CTCTTC	2 cut(s)	208, 956
EciI	GGCGGA	4 cut(s)	55, 308, 472, 488
Ecl136II	GAGCTC	1 cut(s)	915
Eco24I	GRGCYC	2 cut(s)	232, 917
Eco47I	GGWCC	2 cut(s)	618, 811
Eco53kI	GAGCTC	1 cut(s)	915
Eco88I	CYCGRG	2 cut(s)	710, 869
EcoICRI	GAGCTC	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRII	CCWGG	2 cut(s)	999, 1236
EcoT38I	GRGCYC	2 cut(s)	232, 917
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	4 cut(s)	270, 638, 1139, 1253
FaiI	YATR	9 cut(s)	268, 636, 740, 818, 959, 1137, 1206, 1251, 1310
FaqI	GGGAC	2 cut(s)	373, 824
FatI	CATG	4 cut(s)	266, 634, 1135, 1249
FauI	CCCGC	3 cut(s)	101, 457, 533
Fnu4HI	GCNGC	3 cut(s)	306, 493, 1142
FokI	GGATG	4 cut(s)	94, 130, 233, 1196
FriOI	GRGCYC	2 cut(s)	232, 917
Fsp4HI	GCNGC	3 cut(s)	306, 493, 1142
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	306, 493, 1142
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	4 cut(s)	582, 862, 986, 1255
HapII	CCGG	4 cut(s)	510, 648, 891, 1160
HgaI	GACGC	2 cut(s)	311, 502
Hin1I	GRCGYC	3 cut(s)	303, 360, 513
Hin1II	CATG	4 cut(s)	270, 638, 1139, 1253
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	7 cut(s)	670, 763, 872, 919, 979, 1196, 1321
HpaII	CCGG	4 cut(s)	510, 648, 891, 1160
HphI	GGTGA	6 cut(s)	328, 367, 499, 532, 616, 637
Hpy188I	TCNGA	5 cut(s)	355, 827, 912, 955, 1201
Hpy188III	TCNNGA	6 cut(s)	209, 532, 905, 976, 1051, 1318
Hpy99I	CGWCG	5 cut(s)	305, 359, 362, 365, 1102
HpyAV	CCTTC	4 cut(s)	195, 325, 382, 487
HpyCH4III	ACNGT	2 cut(s)	553, 1214
HpyCH4IV	ACGT	2 cut(s)	360, 561
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
HpyF3I	CTNAG	4 cut(s)	273, 614, 824, 911
HpySE526I	ACGT	2 cut(s)	360, 561
Hsp92I	GRCGYC	3 cut(s)	303, 360, 513
Hsp92II	CATG	4 cut(s)	270, 638, 1139, 1253
Kzo9I	GATC	5 cut(s)	454, 544, 687, 907, 1240
LguI	GCTCTTC	1 cut(s)	956
LmnI	GCTCC	5 cut(s)	187, 203, 282, 356, 1126
Lsp1109I	GCAGC	2 cut(s)	504, 1128
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	360, 561
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	456, 546, 689, 909, 1242
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	5 cut(s)	454, 544, 687, 907, 1240
MboII	GAAGA	8 cut(s)	195, 619, 729, 762, 973, 1284, 1294, 1316
MfeI	CAATTG	1 cut(s)	1281
MhlI	GDGCHC	2 cut(s)	232, 917
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1281
MluNI	TGGCCA	1 cut(s)	986
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	4 cut(s)	185, 309, 378, 582
Mox20I	TGGCCA	1 cut(s)	986
MscI	TGGCCA	1 cut(s)	986
MslI	CAYNNNNRTG	1 cut(s)	1248
Msp20I	TGGCCA	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	1181
MspI	CCGG	4 cut(s)	510, 648, 891, 1160
MspR9I	CCNGG	3 cut(s)	891, 1001, 1238
MunI	CAATTG	1 cut(s)	1281
MvaI	CCWGG	2 cut(s)	1001, 1238
MwoI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
NciI	CCSGG	1 cut(s)	891
NdeII	GATC	5 cut(s)	454, 544, 687, 907, 1240
NlaIII	CATG	4 cut(s)	270, 638, 1139, 1253
NlaIV	GGNNCC	3 cut(s)	6, 199, 812
NmeAIII	GCCGAG	2 cut(s)	576, 1092
NmuCI	GTSAC	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	710
PciSI	GCTCTTC	1 cut(s)	956
PcsI	WCGNNNNNNNCGW	2 cut(s)	750, 1094
PfeI	GAWTC	6 cut(s)	670, 763, 919, 979, 1196, 1321
PflFI	GACNNNGTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	307, 494, 1143
PleI	GAGTC	1 cut(s)	880
PpsI	GAGTC	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	811
Psp124BI	GAGCTC	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	811
Psp6I	CCWGG	2 cut(s)	999, 1236
PspGI	CCWGG	2 cut(s)	999, 1236
PspN4I	GGNNCC	3 cut(s)	6, 199, 812
PspPI	GGNCC	5 cut(s)	581, 618, 811, 860, 1253
PspPPI	RGGWCCY	1 cut(s)	811
PspXI	VCTCGAGB	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	1248
SacI	GAGCTC	1 cut(s)	917
SapI	GCTCTTC	1 cut(s)	956
SatI	GCNGC	3 cut(s)	306, 493, 1142
Sau3AI	GATC	5 cut(s)	454, 544, 687, 907, 1240
Sau96I	GGNCC	5 cut(s)	581, 618, 811, 860, 1253
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	3 cut(s)	891, 1001, 1238
SduI	GDGCHC	2 cut(s)	232, 917
Sfr274I	CTCGAG	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	845
SgrAI	CRCCGGYG	1 cut(s)	509
SinI	GGWCC	2 cut(s)	618, 811
SlaI	CTCGAG	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	1248
SmlI	CTYRAG	2 cut(s)	383, 710
SmoI	CTYRAG	2 cut(s)	383, 710
Sse9I	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1281
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	917
StyD4I	CCNGG	3 cut(s)	889, 999, 1236
TaaI	ACNGT	2 cut(s)	553, 1214
TaiI	ACGT	2 cut(s)	363, 564
TaqI	TCGA	8 cut(s)	690, 711, 744, 753, 845, 875, 917, 1100
TasI	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1281
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	6 cut(s)	670, 763, 919, 979, 1196, 1321
TscAI	CASTG	3 cut(s)	583, 1198, 1219
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	492, 1141
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	3 cut(s)	890, 974, 1018
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	3 cut(s)	583, 1198, 1219
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	618, 811
XapI	RAATTY	2 cut(s)	847, 971
XbaI	TCTAGA	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	710
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.