Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Forward (+)

4407159 .. 4409106

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAACCACCACCTTTACTCCTCACTCTCCTCCTCCTCCTCCTCTCCTCCACTACCCTCTCCGCCAAGACCACCACCACTCCCGCCCTCCCTCCAACTCCACCCCCAACTCCGCCCCCAACTCACTCTCCAACTCCCACTACCCCCTCAAGCCCCTCCTCAAGCTCCTCCTCATCATCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATCCCAACTTCCAAAGACCCATGCACCCAACTCCACTCCAACACCACCCTCTGCGACGCGGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTCTCCTTCACCGCCCTCAAGTCCCTCTCCACTCTCCAATCCCTCCACTTCCTCAACTGCCCCATCTCCCCCATCCGCCTCCCCTCCGATCTCGTCTCCTCCCTCCGCTCCTTCTCCGCCATCTCCTCCCTCCGCCGCCTCACCGGCGTCTGGCTCGCCCGCCTCCAGAACCTCACCGATCTCACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTCATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACCATCTCCCATGCCAACCTCACCGGTAATGTCCCCAAACACTTGAATCTCAACTTGACCCAGATCGATTTCTCCGGTAATGAACTCGAAGGAAGAATACCCAGTTCCATTACTCTGCTCGAAAACCTCCAAAGCTTGAATCTTTCGTCCAACACACTCAATGGCGAGATACCCACTTCGTTTGGGGACCTCATTTCCCTCACAAACGTTTCTCTAGCTTCGAACTCATTGTCCGGGCCGATACCCGAGTCCATTTCAGCCATTCCCGGGTTAGTACATCTTGATCTGAGCTCGAATCAGCTCAATGGCTCAATCCCAAAGTTCCTGTCTGATATGAAGAGCTTGAAGCATTTGAATCTTGCTAACAATAACTTCAAGGGAGTCATTCCTTTCAATGCGTCGTTCATTAGTAAGTTGGCTGTGTTCAAGATTAGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTTGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACATGGACTGCCATTGTCGCCTCCTCCGGCCAAACAGGACAGTTCGGCAGATGACAGCAGTGATTCGGATTATGATGACAGCGATGAGGATAGTTCGAATCAGAGTGATCATCATCATGGGCCGAATAAGGTTGTTCTTGGTGTGGCAATTGCGCTTTCTTCCATTGTGTTCCTCATCATTTTCTTGATTCTTTGCTCAAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

440

Amino Acids

46.74

Weight (kDa)

7.66

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	117 - 349	1.2e-07	Leucine-rich repeat region
LRR_8	PF13855	242 - 300	2.3e-07	Leucine rich repeat
LRR_8	PF13855	265 - 324	3.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	447
AccII	CGCG	1 cut(s)	278
AclI	AACGTT	1 cut(s)	804
AcoI	YGGCCR	2 cut(s)	279, 1134
AcyI	GRCGYC	2 cut(s)	333, 486
AfaI	GTAC	1 cut(s)	873
AfiI	CCNNNNNNNGG	2 cut(s)	489, 864
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	9 cut(s)	580, 643, 736, 943, 952, 973, 991, 1024, 1081
AloI	GAACNNNNNNTCC	2 cut(s)	812, 844
AluBI	AGCT	8 cut(s)	165, 586, 732, 815, 888, 898, 939, 1084
AluI	AGCT	8 cut(s)	165, 586, 732, 815, 888, 898, 939, 1084
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	2 cut(s)	439, 532
Ama87I	CYCGRG	2 cut(s)	842, 863
AoxI	GGCC	5 cut(s)	279, 553, 833, 1134, 1226
ArsI	GACNNNNNNTTYG	4 cut(s)	812, 844, 908, 940
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	1261
AspS9I	GGNCC	5 cut(s)	554, 591, 784, 833, 1226
AsuC2I	CCSGG	3 cut(s)	832, 864, 865
AsuHPI	GGTGA	7 cut(s)	301, 340, 472, 505, 514, 589, 610
AsuII	TTCGAA	2 cut(s)	818, 1202
AvaI	CYCGRG	2 cut(s)	842, 863
AvaII	GGWCC	2 cut(s)	591, 784
BaeI	ACNNNNGTAYC	2 cut(s)	830, 863
BanII	GRGCYC	2 cut(s)	205, 890
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
Bbv12I	GWGCWC	1 cut(s)	890
BccI	CCATC	4 cut(s)	410, 419, 467, 608
BclI	TGATCA	1 cut(s)	1213
BcnI	CCSGG	3 cut(s)	832, 864, 865
BcoDI	GTCTC	2 cut(s)	439, 532
BfaI	CTAG	2 cut(s)	182, 812
BglI	GCCNNNNNGGC	1 cut(s)	483
BisI	GCNGC	2 cut(s)	279, 475
BlsI	GCNGC	2 cut(s)	280, 476
Bme1390I	CCNGG	3 cut(s)	832, 864, 865
Bme18I	GGWCC	2 cut(s)	591, 784
BmeT110I	CYCGRG	2 cut(s)	842, 863
BmgT120I	GGNCC	5 cut(s)	554, 591, 784, 833, 1226
BmiI	GGNNCC	2 cut(s)	6, 785
BmrFI	CCNGG	3 cut(s)	832, 864, 865
BmrI	ACTGGG	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	587
Bpu14I	TTCGAA	2 cut(s)	818, 1202
BpuEI	CTTGAG	3 cut(s)	133, 145, 341
BpuMI	CCSGG	3 cut(s)	832, 864, 865
Bsa29I	ATCGAT	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	1218
BsaHI	GRCGYC	2 cut(s)	333, 486
BsaJI	CCNNGG	1 cut(s)	863
BsaWI	WCCGGW	2 cut(s)	620, 671
BsaXI	ACNNNNNCTCC	7 cut(s)	33, 64, 94, 112, 142, 287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	489, 864
Bse118I	RCCGGY	2 cut(s)	482, 620
Bse1I	ACTGG	2 cut(s)	549, 699
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	1218
BseCI	ATCGAT	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	863
BseGI	GGATG	2 cut(s)	219, 411
BseJI	GATNNNNATC	1 cut(s)	1218
BseLI	CCNNNNNNNGG	2 cut(s)	489, 864
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	2 cut(s)	601, 875
BseNI	ACTGG	2 cut(s)	549, 699
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	5 cut(s)	281, 555, 835, 1136, 1228
BshTI	ACCGGT	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	890
BsiHKCI	CYCGRG	2 cut(s)	842, 863
BsiSI	CCGG	6 cut(s)	483, 621, 672, 831, 864, 1133
BslFI	GGGAC	3 cut(s)	346, 614, 797
BslI	CCNNNNNNNGG	2 cut(s)	489, 864
BsmAI	GTCTC	2 cut(s)	439, 532
BsmBI	CGTCTC	2 cut(s)	439, 532
BsmFI	GGGAC	3 cut(s)	346, 614, 797
BsnI	GGCC	5 cut(s)	281, 555, 835, 1136, 1228
BsoBI	CYCGRG	2 cut(s)	842, 863
Bsp119I	TTCGAA	2 cut(s)	818, 1202
Bsp1286I	GDGCHC	2 cut(s)	205, 890
Bsp143I	GATC	5 cut(s)	427, 517, 660, 880, 1213
BspANI	GGCC	5 cut(s)	281, 555, 835, 1136, 1228
BspCNI	CTCAG	2 cut(s)	600, 876
BspDI	ATCGAT	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	6, 785
BspQI	GCTCTTC	1 cut(s)	929
BspT104I	TTCGAA	2 cut(s)	818, 1202
BsrBI	CCGCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	2 cut(s)	482, 620
BsrI	ACTGG	2 cut(s)	549, 699
BssAI	RCCGGY	2 cut(s)	482, 620
BssECI	CCNNGG	1 cut(s)	863
BssMI	GATC	5 cut(s)	427, 517, 660, 880, 1213
BssNI	GRCGYC	2 cut(s)	333, 486
Bst4CI	ACNGT	2 cut(s)	526, 1148
Bst6I	CTCTTC	1 cut(s)	929
BstACI	GRCGYC	2 cut(s)	333, 486
BstAPI	GCANNNNNTGC	1 cut(s)	1047
BstBI	TTCGAA	2 cut(s)	818, 1202
BstC8I	GCNNGC	2 cut(s)	495, 499
BstDEI	CTNAG	2 cut(s)	587, 884
BstF5I	GGATG	2 cut(s)	219, 411
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	1 cut(s)	1261
BstKTI	GATC	5 cut(s)	430, 520, 663, 883, 1216
BstMAI	GTCTC	2 cut(s)	439, 532
BstMBI	GATC	5 cut(s)	427, 517, 660, 880, 1213
BstMWI	GCNNNNNNNGC	3 cut(s)	483, 1047, 1123
BstSCI	CCNGG	3 cut(s)	830, 862, 863
BstUI	CGCG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	663
BsuRI	GGCC	5 cut(s)	281, 555, 835, 1136, 1228
BsuTUI	ATCGAT	1 cut(s)	663
BtgZI	GCGATG	1 cut(s)	1203
BtsCI	GGATG	2 cut(s)	219, 411
BtsI	GCAGTG	1 cut(s)	1171
BtsIMutI	CAGTG	2 cut(s)	556, 1171
Cac8I	GCNNGC	2 cut(s)	495, 499
CfoI	GCGC	1 cut(s)	1261
Cfr10I	RCCGGY	2 cut(s)	482, 620
Cfr13I	GGNCC	5 cut(s)	554, 591, 784, 833, 1226
Cfr9I	CCCGGG	1 cut(s)	863
ClaI	ATCGAT	1 cut(s)	663
CseI	GACGC	3 cut(s)	284, 475, 984
Csp6I	GTAC	1 cut(s)	872
CspAI	ACCGGT	1 cut(s)	620
CspCI	CAANNNNNGTGG	4 cut(s)	532, 567, 760, 795
CviAII	CATG	4 cut(s)	240, 608, 1109, 1223
CviQI	GTAC	1 cut(s)	872
DdeI	CTNAG	2 cut(s)	587, 884
DpnI	GATC	5 cut(s)	429, 519, 662, 882, 1215
DpnII	GATC	5 cut(s)	427, 517, 660, 880, 1213
EaeI	YGGCCR	2 cut(s)	279, 1134
Eam1104I	CTCTTC	1 cut(s)	929
EarI	CTCTTC	1 cut(s)	929
EciI	GGCGGA	6 cut(s)	52, 102, 281, 404, 445, 461
Ecl136II	GAGCTC	1 cut(s)	888
Eco24I	GRGCYC	2 cut(s)	205, 890
Eco47I	GGWCC	2 cut(s)	591, 784
Eco53kI	GAGCTC	1 cut(s)	888
Eco88I	CYCGRG	2 cut(s)	842, 863
EcoICRI	GAGCTC	1 cut(s)	888
EcoO109I	RGGNCCY	1 cut(s)	784
EcoT38I	GRGCYC	2 cut(s)	205, 890
Esp3I	CGTCTC	2 cut(s)	439, 532
FaeI	CATG	4 cut(s)	243, 611, 1112, 1226
FaiI	YATR	6 cut(s)	241, 609, 932, 1110, 1179, 1224
FaqI	GGGAC	3 cut(s)	346, 614, 797
FatI	CATG	4 cut(s)	239, 607, 1108, 1222
FauI	CCCGC	2 cut(s)	91, 506
FbaI	TGATCA	1 cut(s)	1213
Fnu4HI	GCNGC	2 cut(s)	279, 475
FokI	GGATG	2 cut(s)	206, 398
FriOI	GRGCYC	2 cut(s)	205, 890
Fsp4HI	GCNGC	2 cut(s)	279, 475
FspBI	CTAG	2 cut(s)	182, 812
GlaI	GCGC	1 cut(s)	1260
GluI	GCNGC	2 cut(s)	279, 475
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	5 cut(s)	281, 555, 835, 1136, 1228
HapII	CCGG	6 cut(s)	483, 621, 672, 831, 864, 1133
HgaI	GACGC	3 cut(s)	284, 475, 984
HhaI	GCGC	1 cut(s)	1261
Hin1I	GRCGYC	2 cut(s)	333, 486
Hin1II	CATG	4 cut(s)	243, 611, 1112, 1226
Hin6I	GCGC	1 cut(s)	1259
HinP1I	GCGC	1 cut(s)	1259
HindIII	AAGCTT	1 cut(s)	730
HinfI	GANTC	9 cut(s)	643, 736, 845, 892, 952, 978, 1169, 1204, 1294
HpaII	CCGG	6 cut(s)	483, 621, 672, 831, 864, 1133
HphI	GGTGA	7 cut(s)	301, 340, 472, 505, 514, 589, 610
Hpy188I	TCNGA	6 cut(s)	328, 427, 885, 928, 1174, 1209
Hpy188III	TCNNGA	5 cut(s)	182, 505, 878, 1024, 1291
Hpy99I	CGWCG	5 cut(s)	278, 332, 335, 338, 1000
HpyAV	CCTTC	4 cut(s)	298, 355, 460, 680
HpyCH4III	ACNGT	2 cut(s)	526, 1148
HpyCH4IV	ACGT	3 cut(s)	333, 534, 804
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	483, 1047, 1123
HpyF3I	CTNAG	2 cut(s)	587, 884
HpySE526I	ACGT	3 cut(s)	333, 534, 804
Hsp92I	GRCGYC	2 cut(s)	333, 486
Hsp92II	CATG	4 cut(s)	243, 611, 1112, 1226
HspAI	GCGC	1 cut(s)	1259
Ksp22I	TGATCA	1 cut(s)	1213
Kzo9I	GATC	5 cut(s)	427, 517, 660, 880, 1213
LguI	GCTCTTC	1 cut(s)	929
LmnI	GCTCC	4 cut(s)	170, 329, 452, 1099
MaeI	CTAG	2 cut(s)	182, 812
MaeII	ACGT	3 cut(s)	333, 534, 804
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	5 cut(s)	429, 519, 662, 882, 1215
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	5 cut(s)	427, 517, 660, 880, 1213
MboII	GAAGA	4 cut(s)	592, 702, 946, 1257
MfeI	CAATTG	1 cut(s)	1254
MhlI	GDGCHC	2 cut(s)	205, 890
MluCI	AATT	3 cut(s)	1042, 1076, 1254
MlyI	GAGTC	2 cut(s)	854, 987
MmeI	TCCRAC	6 cut(s)	119, 155, 282, 351, 555, 771
MslI	CAYNNNNRTG	1 cut(s)	1221
MspI	CCGG	6 cut(s)	483, 621, 672, 831, 864, 1133
MspR9I	CCNGG	3 cut(s)	832, 864, 865
MunI	CAATTG	1 cut(s)	1254
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	483, 1047, 1123
NciI	CCSGG	3 cut(s)	832, 864, 865
NdeII	GATC	5 cut(s)	427, 517, 660, 880, 1213
NlaIII	CATG	4 cut(s)	243, 611, 1112, 1226
NlaIV	GGNNCC	2 cut(s)	6, 785
NmeAIII	GCCGAG	2 cut(s)	549, 1065
NmuCI	GTSAC	1 cut(s)	595
NspV	TTCGAA	2 cut(s)	818, 1202
PciSI	GCTCTTC	1 cut(s)	929
PfeI	GAWTC	7 cut(s)	643, 736, 892, 952, 1169, 1204, 1294
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	280, 476
PleI	GAGTC	2 cut(s)	853, 986
PpsI	GAGTC	2 cut(s)	853, 986
PpuMI	RGGWCCY	1 cut(s)	784
Psp124BI	GAGCTC	1 cut(s)	890
Psp1406I	AACGTT	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	6, 785
PspPI	GGNCC	5 cut(s)	554, 591, 784, 833, 1226
PspPPI	RGGWCCY	1 cut(s)	784
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	873
RsaNI	GTAC	1 cut(s)	872
RseI	CAYNNNNRTG	1 cut(s)	1221
SacI	GAGCTC	1 cut(s)	890
SapI	GCTCTTC	1 cut(s)	929
SatI	GCNGC	2 cut(s)	279, 475
Sau3AI	GATC	5 cut(s)	427, 517, 660, 880, 1213
Sau96I	GGNCC	5 cut(s)	554, 591, 784, 833, 1226
SchI	GAGTC	2 cut(s)	854, 987
ScrFI	CCNGG	3 cut(s)	832, 864, 865
SduI	GDGCHC	2 cut(s)	205, 890
SfuI	TTCGAA	2 cut(s)	818, 1202
SgrAI	CRCCGGYG	1 cut(s)	482
SinI	GGWCC	2 cut(s)	591, 784
SmaI	CCCGGG	1 cut(s)	865
SmiMI	CAYNNNNRTG	1 cut(s)	1221
SmlI	CTYRAG	3 cut(s)	148, 160, 356
SmoI	CTYRAG	3 cut(s)	148, 160, 356
Sse9I	AATT	3 cut(s)	1042, 1076, 1254
SspMI	CTAG	2 cut(s)	182, 812
SstI	GAGCTC	1 cut(s)	890
StyD4I	CCNGG	3 cut(s)	830, 862, 863
TaaI	ACNGT	2 cut(s)	526, 1148
TaiI	ACGT	3 cut(s)	336, 537, 807
TaqI	TCGA	7 cut(s)	663, 684, 717, 818, 890, 1073, 1202
TasI	AATT	3 cut(s)	1042, 1076, 1254
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	2 cut(s)	281, 477
TfiI	GAWTC	7 cut(s)	643, 736, 892, 952, 1169, 1204, 1294
TscAI	CASTG	2 cut(s)	556, 1171
TseFI	GTSAC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	3 cut(s)	693, 947, 991
TspGWI	ACGGA	1 cut(s)	583
TspMI	CCCGGG	1 cut(s)	863
TspRI	CASTG	2 cut(s)	556, 1171
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	591, 784
XbaI	TCTAGA	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	863
XspI	CTAG	2 cut(s)	182, 812
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.