Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Forward (+)

36771434 .. 36772741

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1276600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGAACCCCCACCGTTGCTTCTCACTCTACTTCTCCACCTCCTCCTCTCCACCACCGCCGTCTCAGCCACAGCACCACTCCCCCCAACCCCATCTCCCACCTCCTCCCCCACCCCACCAAACTCCACCACCTCACCATCCTCACCATCTTCAAGCACACTCGACCCAAAGCAACTCAGAGCCCTCCAATCCCTCAACATTCCCACCTCCAAAGACCCCTGCACAAACCCCTCCATCCTCCCCCCAAACACCACCCGCTGCGACTCCTCCAAGCCCTTCCGCCACCTCCTTTCCCTCCGCCTCGTCAACTGCTCCGACGCCGTCGCCCTCTCCTTCACCGCCCTCAAATCCCTCTCCACCCTCCAGTCCCTCCAGTTCCTCAACTGCCCCATTGCTCCAATCCGCTTCCCCGCCGACCTCGTCGCTTCCCTCCACTCCTTCACATGCATCAACTCCCTCCGCCGCCTCACCGGCGTCTGGCTCGCCCGCCTCCAAAACCTCACCGATCTCACCGTCTCCAACGTCCAAGTCAATGCCTCTGGACCCTTCGTCATCCTCGGAAACTTGAAGAAGCTCAGGTCAGTCACCATCTCCCAAGCCAATTTAACCGGCAGCATTCCGAAGCACATGAATTTAAACCTTACCCACATCGATTTTTCCGGCAATAAGCTTCGGGGGAAGATACCCAGTTCCCTCACACTCCTCGAAAACCTCGAAACCTTAAACCTTTCCTCCAATTCCATCAATGGCGAAATACCCAATTCGTTCGGGGACCTGATTTCGCTAAAGAACGTGTCTTTGTCCTCAAATTCTTTATCCGGCGCCATCCCGGAGTCGATTTCAGCAATCCCGGACTTAGTTCATCTCGATCTGAGCTCGAATCAGCTCAACGGAACAATCCCAAAATTCCTCTCCGACATGAAGGGCTTGAAGCACTTAAATCTCGAAAACAACGAGTTGCACGGGGTCGTGCCGTTCAATGCGTCGTTCATTAGCAGACTGCAAGTGTTCAAGATTAGCGGGAACAGCAACCTCTGCTACAACCACTCTGTTCTGTCGTCGAAACTAAAGCTGGGGATTTCTCCCTGCGACAAACATGGACTGCCCATGTCGCCGCCGCAGGCGAAAGGCGATGATTCGTCAGCGGATGGCAGCACTAATTCGGACTATGACGACAGTGATGAGGATGATCAAAAGCAGGATCGACAACATGGGCCAAATAAGGTTGTTCTTGGTGTGGCCATTGCGCTTTCTTCTCTTGTCTTCCTCGTTATTTTCTTGGTTCTTCTCTCGAAATGCTGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

436

Amino Acids

46.57

Weight (kDa)

8.53

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	95 - 345	4.1e-09	Leucine-rich repeat region
LRR_8	PF13855	254 - 296	4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	821
AclWI	GGATC	1 cut(s)	1209
AcoI	YGGCCR	1 cut(s)	1239
AcsI	RAATTY	3 cut(s)	631, 808, 905
AcyI	GRCGYC	3 cut(s)	318, 474, 822
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	5 cut(s)	153, 568, 931, 979, 1012
AhdI	GACNNNNNGTC	1 cut(s)	548
AluBI	AGCT	5 cut(s)	574, 670, 876, 886, 1072
AluI	AGCT	5 cut(s)	574, 670, 876, 886, 1072
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	2 cut(s)	67, 520
AlwI	GGATC	1 cut(s)	1209
AoxI	GGCC	2 cut(s)	1214, 1239
ApeKI	GCWGC	3 cut(s)	258, 612, 1152
ApoI	RAATTY	3 cut(s)	631, 808, 905
AspLEI	GCGC	2 cut(s)	824, 1249
AspS9I	GGNCC	3 cut(s)	542, 772, 1214
AsuC2I	CCSGG	2 cut(s)	830, 851
AsuHPI	GGTGA	7 cut(s)	126, 135, 328, 460, 493, 502, 577
AvaII	GGWCC	2 cut(s)	542, 772
BalI	TGGCCA	1 cut(s)	1241
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	2 cut(s)	184, 878
BbsI	GAAGAC	1 cut(s)	1255
Bbv12I	GWGCWC	1 cut(s)	878
BbvI	GCAGC	3 cut(s)	245, 624, 1164
BccI	CCATC	8 cut(s)	100, 145, 154, 242, 596, 749, 833, 1142
BceAI	ACGGC	3 cut(s)	44, 305, 958
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	2 cut(s)	830, 851
BcoDI	GTCTC	2 cut(s)	67, 520
BfoI	RGCGCY	1 cut(s)	825
BglI	GCCNNNNNGGC	1 cut(s)	471
BisI	GCNGC	6 cut(s)	259, 463, 613, 1115, 1118, 1153
BlsI	GCNGC	6 cut(s)	260, 464, 614, 1116, 1119, 1154
Bme1390I	CCNGG	2 cut(s)	830, 851
Bme18I	GGWCC	2 cut(s)	542, 772
BmeRI	GACNNNNNGTC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	542, 772, 1214
BmiI	GGNNCC	4 cut(s)	6, 544, 773, 823
BmrFI	CCNGG	2 cut(s)	830, 851
BmrI	ACTGGG	1 cut(s)	681
BmsI	GCATC	1 cut(s)	456
BmuI	ACTGGG	1 cut(s)	681
BpiI	GAAGAC	1 cut(s)	1255
BpmI	CTGGAG	2 cut(s)	347, 356
Bpu10I	CCTNAGC	1 cut(s)	575
BpuMI	CCSGG	2 cut(s)	830, 851
Bsa29I	ATCGAT	1 cut(s)	651
BsaHI	GRCGYC	3 cut(s)	318, 474, 822
BsaJI	CCNNGG	1 cut(s)	556
BsaXI	ACNNNNNCTCC	4 cut(s)	79, 109, 716, 746
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	2 cut(s)	470, 608
Bse1I	ACTGG	3 cut(s)	364, 373, 687
Bse3DI	GCAATG	2 cut(s)	390, 1242
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	6 cut(s)	137, 234, 552, 825, 1153, 1192
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	390, 1242
BseMII	CTCAG	4 cut(s)	78, 190, 589, 863
BseNI	ACTGG	3 cut(s)	364, 373, 687
BseRI	GAGGAG	5 cut(s)	32, 35, 94, 256, 692
BseXI	GCAGC	3 cut(s)	245, 624, 1164
BseYI	CCCAGC	1 cut(s)	1072
BsgI	GTGCAG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	1216, 1241
BshNI	GGYRCC	1 cut(s)	821
BshVI	ATCGAT	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	878
BsiSI	CCGG	6 cut(s)	471, 609, 660, 819, 830, 851
BslFI	GGGAC	2 cut(s)	352, 785
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	2 cut(s)	67, 520
BsmBI	CGTCTC	2 cut(s)	67, 520
BsmFI	GGGAC	2 cut(s)	352, 785
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	1216, 1241
Bsp1286I	GDGCHC	2 cut(s)	184, 878
Bsp143I	GATC	4 cut(s)	505, 868, 1189, 1201
BspANI	GGCC	2 cut(s)	1216, 1241
BspCNI	CTCAG	4 cut(s)	77, 189, 588, 864
BspDI	ATCGAT	1 cut(s)	651
BspLI	GGNNCC	4 cut(s)	6, 544, 773, 823
BspPI	GGATC	1 cut(s)	1209
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	2 cut(s)	390, 1242
BsrFI	RCCGGY	2 cut(s)	470, 608
BsrI	ACTGG	3 cut(s)	364, 373, 687
BssAI	RCCGGY	2 cut(s)	470, 608
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	4 cut(s)	505, 868, 1189, 1201
BssNI	GRCGYC	3 cut(s)	318, 474, 822
Bst4CI	ACNGT	3 cut(s)	15, 514, 1178
BstACI	GRCGYC	3 cut(s)	318, 474, 822
BstAPI	GCANNNNNTGC	1 cut(s)	1035
BstC8I	GCNNGC	3 cut(s)	483, 487, 1122
BstDEI	CTNAG	5 cut(s)	64, 176, 575, 856, 872
BstF5I	GGATG	6 cut(s)	137, 234, 552, 825, 1153, 1192
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	2 cut(s)	824, 1249
BstKTI	GATC	4 cut(s)	508, 871, 1192, 1204
BstMAI	GTCTC	2 cut(s)	67, 520
BstMBI	GATC	4 cut(s)	505, 868, 1189, 1201
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 471, 1026, 1035, 1111
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	828, 849
BstV1I	GCAGC	3 cut(s)	245, 624, 1164
BstV2I	GAAGAC	1 cut(s)	1255
Bsu15I	ATCGAT	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	1216, 1241
BsuTUI	ATCGAT	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	1146
BtsCI	GGATG	6 cut(s)	137, 234, 552, 825, 1153, 1192
BtsIMutI	CAGTG	1 cut(s)	1183
Cac8I	GCNNGC	3 cut(s)	483, 487, 1122
CfoI	GCGC	2 cut(s)	824, 1249
Cfr10I	RCCGGY	2 cut(s)	470, 608
Cfr13I	GGNCC	3 cut(s)	542, 772, 1214
ClaI	ATCGAT	1 cut(s)	651
CseI	GACGC	3 cut(s)	326, 463, 972
CviAII	CATG	6 cut(s)	444, 628, 919, 1097, 1108, 1211
DdeI	CTNAG	5 cut(s)	64, 176, 575, 856, 872
DinI	GGCGCC	1 cut(s)	823
DpnI	GATC	4 cut(s)	507, 870, 1191, 1203
DpnII	GATC	4 cut(s)	505, 868, 1189, 1201
DraI	TTTAAA	1 cut(s)	636
DriI	GACNNNNNGTC	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	1239
Eam1105I	GACNNNNNGTC	1 cut(s)	548
EciI	GGCGGA	3 cut(s)	269, 287, 449
Ecl136II	GAGCTC	1 cut(s)	876
Eco24I	GRGCYC	2 cut(s)	184, 878
Eco47I	GGWCC	2 cut(s)	542, 772
Eco53kI	GAGCTC	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	449
EcoT38I	GRGCYC	2 cut(s)	184, 878
EgeI	GGCGCC	1 cut(s)	823
EheI	GGCGCC	1 cut(s)	823
Esp3I	CGTCTC	2 cut(s)	67, 520
FaeI	CATG	6 cut(s)	447, 631, 922, 1100, 1111, 1214
FaiI	YATR	7 cut(s)	445, 629, 920, 1098, 1109, 1170, 1212
FaqI	GGGAC	2 cut(s)	352, 785
FatI	CATG	6 cut(s)	443, 627, 918, 1096, 1107, 1210
FauI	CCCGC	4 cut(s)	263, 418, 494, 1013
FbaI	TGATCA	1 cut(s)	1189
Fnu4HI	GCNGC	6 cut(s)	259, 463, 613, 1115, 1118, 1153
FokI	GGATG	6 cut(s)	124, 221, 539, 812, 1160, 1199
FriOI	GRGCYC	2 cut(s)	184, 878
Fsp4HI	GCNGC	6 cut(s)	259, 463, 613, 1115, 1118, 1153
GlaI	GCGC	2 cut(s)	823, 1248
GluI	GCNGC	6 cut(s)	259, 463, 613, 1115, 1118, 1153
GsaI	CCCAGC	1 cut(s)	1076
GsuI	CTGGAG	2 cut(s)	347, 356
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	1216, 1241
HapII	CCGG	6 cut(s)	471, 609, 660, 819, 830, 851
HgaI	GACGC	3 cut(s)	326, 463, 972
HhaI	GCGC	2 cut(s)	824, 1249
Hin1I	GRCGYC	3 cut(s)	318, 474, 822
Hin1II	CATG	6 cut(s)	447, 631, 922, 1100, 1111, 1214
Hin6I	GCGC	2 cut(s)	822, 1247
HinP1I	GCGC	2 cut(s)	822, 1247
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	668
HinfI	GANTC	4 cut(s)	263, 833, 880, 1136
HpaII	CCGG	6 cut(s)	471, 609, 660, 819, 830, 851
HphI	GGTGA	7 cut(s)	126, 135, 328, 460, 493, 502, 577
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	7 cut(s)	179, 316, 560, 621, 873, 916, 1165
Hpy188III	TCNNGA	5 cut(s)	540, 866, 944, 1012, 1291
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	5 cut(s)	320, 326, 425, 988, 1063
HpyAV	CCTTC	5 cut(s)	286, 343, 448, 556, 916
HpyCH4III	ACNGT	3 cut(s)	15, 514, 1178
HpyCH4IV	ACGT	2 cut(s)	522, 792
HpyCH4V	TGCA	4 cut(s)	222, 447, 961, 1003
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 471, 1026, 1035, 1111
HpyF3I	CTNAG	5 cut(s)	64, 176, 575, 856, 872
HpySE526I	ACGT	2 cut(s)	522, 792
Hsp92I	GRCGYC	3 cut(s)	318, 474, 822
Hsp92II	CATG	6 cut(s)	447, 631, 922, 1100, 1111, 1214
HspAI	GCGC	2 cut(s)	822, 1247
KasI	GGCGCC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	4 cut(s)	505, 868, 1189, 1201
LmnI	GCTCC	2 cut(s)	317, 400
Lsp1109I	GCAGC	3 cut(s)	245, 624, 1164
LweI	GCATC	1 cut(s)	456
MaeII	ACGT	2 cut(s)	522, 792
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	4 cut(s)	507, 870, 1191, 1203
MboI	GATC	4 cut(s)	505, 868, 1189, 1201
MboII	GAAGA	6 cut(s)	141, 580, 691, 1245, 1255, 1277
MhlI	GDGCHC	2 cut(s)	184, 878
MlsI	TGGCCA	1 cut(s)	1241
MluCI	AATT	7 cut(s)	601, 631, 736, 760, 808, 905, 1159
MluNI	TGGCCA	1 cut(s)	1241
Mly113I	GGCGCC	1 cut(s)	822
MlyI	GAGTC	2 cut(s)	257, 842
MmeI	TCCRAC	3 cut(s)	339, 543, 939
Mox20I	TGGCCA	1 cut(s)	1241
Mph1103I	ATGCAT	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	1241
MseI	TTAA	4 cut(s)	605, 635, 722, 938
Msp20I	TGGCCA	1 cut(s)	1241
MspA1I	CMGCKG	2 cut(s)	258, 1145
MspI	CCGG	6 cut(s)	471, 609, 660, 819, 830, 851
MspR9I	CCNGG	2 cut(s)	830, 851
Mva1269I	GAATGC	1 cut(s)	615
MwoI	GCNNNNNNNGC	5 cut(s)	65, 471, 1026, 1035, 1111
NarI	GGCGCC	1 cut(s)	822
NciI	CCSGG	2 cut(s)	830, 851
NdeII	GATC	4 cut(s)	505, 868, 1189, 1201
NlaIII	CATG	6 cut(s)	447, 631, 922, 1100, 1111, 1214
NlaIV	GGNNCC	4 cut(s)	6, 544, 773, 823
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	449
NspI	RCATGY	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	2 cut(s)	711, 951
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	880, 1136
PflFI	GACNNNGTC	2 cut(s)	320, 419
PfoI	TCCNGGA	2 cut(s)	828, 849
PkrI	GCNGC	6 cut(s)	260, 464, 614, 1116, 1119, 1154
PleI	GAGTC	2 cut(s)	257, 841
PluTI	GGCGCC	1 cut(s)	825
PpsI	GAGTC	2 cut(s)	257, 841
PpuMI	RGGWCCY	1 cut(s)	772
Psp124BI	GAGCTC	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	772
PspFI	CCCAGC	1 cut(s)	1072
PspN4I	GGNNCC	4 cut(s)	6, 544, 773, 823
PspPI	GGNCC	3 cut(s)	542, 772, 1214
PspPPI	RGGWCCY	1 cut(s)	772
PsyI	GACNNNGTC	2 cut(s)	320, 419
SacI	GAGCTC	1 cut(s)	878
SaqAI	TTAA	4 cut(s)	605, 635, 722, 938
SatI	GCNGC	6 cut(s)	259, 463, 613, 1115, 1118, 1153
Sau3AI	GATC	4 cut(s)	505, 868, 1189, 1201
Sau96I	GGNCC	3 cut(s)	542, 772, 1214
SchI	GAGTC	2 cut(s)	257, 842
ScrFI	CCNGG	2 cut(s)	830, 851
SduI	GDGCHC	2 cut(s)	184, 878
SfaNI	GCATC	1 cut(s)	456
SfoI	GGCGCC	1 cut(s)	823
SgrAI	CRCCGGYG	1 cut(s)	470
SinI	GGWCC	2 cut(s)	542, 772
Sse9I	AATT	7 cut(s)	601, 631, 736, 760, 808, 905, 1159
SspDI	GGCGCC	1 cut(s)	821
SstI	GAGCTC	1 cut(s)	878
StyD4I	CCNGG	2 cut(s)	828, 849
TaaI	ACNGT	3 cut(s)	15, 514, 1178
TaiI	ACGT	2 cut(s)	525, 795
TasI	AATT	7 cut(s)	601, 631, 736, 760, 808, 905, 1159
TauI	GCSGC	3 cut(s)	465, 1117, 1120
TfiI	GAWTC	2 cut(s)	880, 1136
Tru1I	TTAA	4 cut(s)	605, 635, 722, 938
Tru9I	TTAA	4 cut(s)	605, 635, 722, 938
TscAI	CASTG	1 cut(s)	1183
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	3 cut(s)	258, 612, 1152
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	4 cut(s)	644, 851, 935, 979
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	1 cut(s)	1183
Tth111I	GACNNNGTC	2 cut(s)	320, 419
VpaK11BI	GGWCC	2 cut(s)	542, 772
XapI	RAATTY	3 cut(s)	631, 808, 905
XceI	RCATGY	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.