Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

7350188 .. 7353366

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG083900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAACCACCACCATTACTCCTCACTCTCCTCCACCTCCTCCTCCTCTCCTCCACCAGCCTCTCCGCCACGACCCCCAACACCACTCACTCCCGCCCCCCAACTCCATCCCCCAACACCACTCACTCCCTCCCCCCAACTCCATCCCCCACTTCGTCTCCAACCCCCACCACCCCCTCCGCTCCTTCCTCAAAAGGCTCATCTTCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATCCCAACTTCCAAAGACCCATGCACTCAGCTCCACTCCAACACCACCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTGTCCTTCACCGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTCCACTTCCTCAACTGCCCCATCGCCCCCATTCGCTTCCCCGCCGATCTCCTCGCCTCCCTCCACTCCTTCTCCGCCGTCAGCAGCCTCCGCCACCTCACCGGCGTCTGGCTCTCCCGCCTCCAGAACCTCACCGATCTAACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTAATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACCATCTCCCATGCCAACCTCACCGGTAATGTTCCCAAACACTTGAATCTCAACTTTACCCAGATCGACTTTTCCGGTAATAAGCTCGAGGGAAGAATACCCAGTTCCATTACCATACTCGAAAACCTCGAAAGCTTGAATCTTTCCTCCAATACACTCAATGGCGAAATACCCACTTCGTTTGGGGACCTCATATCCCTCAGAAATGTCTCCCTTGCTTCGAATTTGCTATCTGGGCCGATACCCGAGTCCATTTCAGCCATTCCCGGCTTGGTTCATCTTGATCTGAGCTCGAATCAGCTCAATGGCACAATCCCCAAGTTCCTTTCGGATATGAGGAGCTTGAAATTCTTGAATCTGGCCAACAATAACTTCCAGGGGGTCGTTCCTTTCAATGTGTCATTCATTAGTAAGTTGGCTTTGTTCAAGATTAGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTCGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACACGGGCTGCCAATGTCGCCTCCTCCGGCGAAAGAGGATAGTTCAGCGGATGACAGCAGTGATTCGGATTATGATGACAGTGATGGGGACGGTGATTCCCAAAATCATGATCATCATCACGGGCCTAATAAGGTAGTTCTTGGTGTGGCAATTGGGCTTTCTTCCCTTGTCTTCCTCATAGTTTTCTTGATTCTTCTATCAAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

449

Amino Acids

47.93

Weight (kDa)

7.28

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	101 - 353	1.4e-06	Leucine-rich repeat region
LRR_8	PF13855	274 - 333	1.9e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	984
AcsI	RAATTY	2 cut(s)	847, 971
AcyI	GRCGYC	3 cut(s)	303, 360, 513
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	8 cut(s)	607, 670, 763, 970, 979, 1018, 1051, 1108
AjnI	CCWGG	1 cut(s)	999
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	8 cut(s)	277, 613, 709, 759, 915, 925, 966, 1111
AluI	AGCT	8 cut(s)	277, 613, 709, 759, 915, 925, 966, 1111
Alw21I	GWGCWC	1 cut(s)	917
Alw26I	GTCTC	3 cut(s)	162, 559, 838
Ama87I	CYCGRG	2 cut(s)	710, 869
AoxI	GGCC	4 cut(s)	580, 860, 984, 1256
ApeKI	GCWGC	2 cut(s)	492, 1141
ApoI	RAATTY	2 cut(s)	847, 971
AsiGI	ACCGGT	1 cut(s)	647
AspS9I	GGNCC	5 cut(s)	581, 618, 811, 860, 1256
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	7 cut(s)	328, 367, 499, 532, 616, 637, 1238
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	2 cut(s)	710, 869
AvaII	GGWCC	2 cut(s)	618, 811
BaeI	ACNNNNGTAYC	2 cut(s)	857, 890
BalI	TGGCCA	1 cut(s)	986
BanII	GRGCYC	2 cut(s)	232, 917
BbsI	GAAGAC	1 cut(s)	1297
Bbv12I	GWGCWC	1 cut(s)	917
BbvI	GCAGC	2 cut(s)	504, 1128
BccI	CCATC	5 cut(s)	115, 151, 437, 635, 1211
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	1001
BclI	TGATCA	1 cut(s)	1243
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	3 cut(s)	162, 559, 838
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	3 cut(s)	306, 493, 1142
BlsI	GCNGC	3 cut(s)	307, 494, 1143
Bme1390I	CCNGG	2 cut(s)	891, 1001
Bme18I	GGWCC	2 cut(s)	618, 811
BmeT110I	CYCGRG	2 cut(s)	710, 869
BmgT120I	GGNCC	5 cut(s)	581, 618, 811, 860, 1256
BmiI	GGNNCC	2 cut(s)	6, 812
BmrFI	CCNGG	2 cut(s)	891, 1001
BmrI	ACTGGG	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	1297
BpmI	CTGGAG	1 cut(s)	515
Bpu10I	CCTNAGC	1 cut(s)	614
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	1248
BsaHI	GRCGYC	3 cut(s)	303, 360, 513
BsaJI	CCNNGG	1 cut(s)	1000
BsaWI	WCCGGW	2 cut(s)	647, 698
BsaXI	ACNNNNNCTCC	7 cut(s)	33, 142, 172, 314, 344, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	2 cut(s)	509, 647
Bse1I	ACTGG	2 cut(s)	576, 726
Bse3DI	GCAATG	1 cut(s)	1116
Bse8I	GATNNNNATC	1 cut(s)	1248
BseBI	CCWGG	1 cut(s)	1001
BseDI	CCNNGG	1 cut(s)	1000
BseGI	GGATG	4 cut(s)	107, 143, 246, 1189
BseJI	GATNNNNATC	1 cut(s)	1248
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	1116
BseMII	CTCAG	4 cut(s)	287, 628, 838, 902
BseNI	ACTGG	2 cut(s)	576, 726
BseXI	GCAGC	2 cut(s)	504, 1128
BshFI	GGCC	4 cut(s)	582, 862, 986, 1258
BshTI	ACCGGT	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	917
BsiHKCI	CYCGRG	2 cut(s)	710, 869
BsiSI	CCGG	5 cut(s)	510, 648, 699, 891, 1160
BslFI	GGGAC	3 cut(s)	373, 824, 1235
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	3 cut(s)	162, 559, 838
BsmBI	CGTCTC	2 cut(s)	162, 559
BsmFI	GGGAC	3 cut(s)	373, 824, 1235
BsnI	GGCC	4 cut(s)	582, 862, 986, 1258
BsoBI	CYCGRG	2 cut(s)	710, 869
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	232, 917
Bsp143I	GATC	5 cut(s)	454, 544, 687, 907, 1243
BspANI	GGCC	4 cut(s)	582, 862, 986, 1258
BspCNI	CTCAG	4 cut(s)	286, 627, 837, 903
BspHI	TCATGA	1 cut(s)	1240
BspLI	GGNNCC	2 cut(s)	6, 812
BspT104I	TTCGAA	1 cut(s)	845
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	1116
BsrFI	RCCGGY	2 cut(s)	509, 647
BsrI	ACTGG	2 cut(s)	576, 726
BssAI	RCCGGY	2 cut(s)	509, 647
BssECI	CCNNGG	1 cut(s)	1000
BssMI	GATC	5 cut(s)	454, 544, 687, 907, 1243
BssNI	GRCGYC	3 cut(s)	303, 360, 513
Bst2UI	CCWGG	1 cut(s)	1001
Bst4CI	ACNGT	3 cut(s)	553, 1214, 1226
BstACI	GRCGYC	3 cut(s)	303, 360, 513
BstAPI	GCANNNNNTGC	1 cut(s)	1074
BstBI	TTCGAA	1 cut(s)	845
BstDEI	CTNAG	4 cut(s)	273, 614, 824, 911
BstF5I	GGATG	4 cut(s)	107, 143, 246, 1189
BstKTI	GATC	5 cut(s)	457, 547, 690, 910, 1246
BstMAI	GTCTC	3 cut(s)	162, 559, 838
BstMBI	GATC	5 cut(s)	454, 544, 687, 907, 1243
BstMWI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
BstNI	CCWGG	1 cut(s)	1001
BstSCI	CCNGG	2 cut(s)	889, 999
BstV1I	GCAGC	2 cut(s)	504, 1128
BstV2I	GAAGAC	1 cut(s)	1297
BsuRI	GGCC	4 cut(s)	582, 862, 986, 1258
BtgZI	GCGATG	1 cut(s)	415
BtsCI	GGATG	4 cut(s)	107, 143, 246, 1189
BtsI	GCAGTG	1 cut(s)	1198
BtsIMutI	CAGTG	3 cut(s)	583, 1198, 1219
CciI	TCATGA	1 cut(s)	1240
Cfr10I	RCCGGY	2 cut(s)	509, 647
Cfr13I	GGNCC	5 cut(s)	581, 618, 811, 860, 1256
CseI	GACGC	2 cut(s)	311, 502
CspAI	ACCGGT	1 cut(s)	647
CspCI	CAANNNNNGTGG	4 cut(s)	559, 594, 787, 822
CviAII	CATG	3 cut(s)	267, 635, 1241
DdeI	CTNAG	4 cut(s)	273, 614, 824, 911
DpnI	GATC	5 cut(s)	456, 546, 689, 909, 1245
DpnII	GATC	5 cut(s)	454, 544, 687, 907, 1243
EaeI	YGGCCR	1 cut(s)	984
EciI	GGCGGA	4 cut(s)	55, 308, 472, 488
Ecl136II	GAGCTC	1 cut(s)	915
Eco24I	GRGCYC	2 cut(s)	232, 917
Eco47I	GGWCC	2 cut(s)	618, 811
Eco53kI	GAGCTC	1 cut(s)	915
Eco88I	CYCGRG	2 cut(s)	710, 869
EcoICRI	GAGCTC	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	999
EcoT38I	GRGCYC	2 cut(s)	232, 917
Esp3I	CGTCTC	2 cut(s)	162, 559
FaeI	CATG	3 cut(s)	270, 638, 1244
FaiI	YATR	8 cut(s)	268, 636, 740, 818, 959, 1206, 1242, 1313
FaqI	GGGAC	3 cut(s)	373, 824, 1235
FatI	CATG	3 cut(s)	266, 634, 1240
FauI	CCCGC	3 cut(s)	101, 457, 533
FbaI	TGATCA	1 cut(s)	1243
Fnu4HI	GCNGC	3 cut(s)	306, 493, 1142
FokI	GGATG	4 cut(s)	94, 130, 233, 1196
FriOI	GRGCYC	2 cut(s)	232, 917
Fsp4HI	GCNGC	3 cut(s)	306, 493, 1142
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	306, 493, 1142
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	4 cut(s)	582, 862, 986, 1258
HapII	CCGG	5 cut(s)	510, 648, 699, 891, 1160
HgaI	GACGC	2 cut(s)	311, 502
Hin1I	GRCGYC	3 cut(s)	303, 360, 513
Hin1II	CATG	3 cut(s)	270, 638, 1244
HindIII	AAGCTT	1 cut(s)	757
HinfI	GANTC	8 cut(s)	670, 763, 872, 919, 979, 1196, 1229, 1324
HpaII	CCGG	5 cut(s)	510, 648, 699, 891, 1160
HphI	GGTGA	7 cut(s)	328, 367, 499, 532, 616, 637, 1238
Hpy188I	TCNGA	5 cut(s)	355, 827, 912, 955, 1201
Hpy188III	TCNNGA	7 cut(s)	209, 532, 905, 976, 1051, 1241, 1321
Hpy99I	CGWCG	5 cut(s)	305, 359, 362, 365, 1102
HpyAV	CCTTC	4 cut(s)	195, 325, 382, 487
HpyCH4III	ACNGT	3 cut(s)	553, 1214, 1226
HpyCH4IV	ACGT	2 cut(s)	360, 561
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
HpyF3I	CTNAG	4 cut(s)	273, 614, 824, 911
HpySE526I	ACGT	2 cut(s)	360, 561
Hsp92I	GRCGYC	3 cut(s)	303, 360, 513
Hsp92II	CATG	3 cut(s)	270, 638, 1244
Ksp22I	TGATCA	1 cut(s)	1243
Kzo9I	GATC	5 cut(s)	454, 544, 687, 907, 1243
LmnI	GCTCC	5 cut(s)	187, 282, 356, 963, 1126
Lsp1109I	GCAGC	2 cut(s)	504, 1128
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	360, 561
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	456, 546, 689, 909, 1245
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	5 cut(s)	454, 544, 687, 907, 1243
MboII	GAAGA	6 cut(s)	195, 619, 729, 1287, 1297, 1319
MfeI	CAATTG	1 cut(s)	1284
MhlI	GDGCHC	2 cut(s)	232, 917
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1284
MluNI	TGGCCA	1 cut(s)	986
MlyI	GAGTC	1 cut(s)	881
MmeI	TCCRAC	4 cut(s)	185, 309, 378, 582
Mox20I	TGGCCA	1 cut(s)	986
MscI	TGGCCA	1 cut(s)	986
Msp20I	TGGCCA	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	1181
MspI	CCGG	5 cut(s)	510, 648, 699, 891, 1160
MspR9I	CCNGG	2 cut(s)	891, 1001
MunI	CAATTG	1 cut(s)	1284
MvaI	CCWGG	1 cut(s)	1001
MwoI	GCNNNNNNNGC	4 cut(s)	498, 859, 1074, 1150
NciI	CCSGG	1 cut(s)	891
NdeII	GATC	5 cut(s)	454, 544, 687, 907, 1243
NlaIII	CATG	3 cut(s)	270, 638, 1244
NlaIV	GGNNCC	2 cut(s)	6, 812
NmeAIII	GCCGAG	2 cut(s)	576, 1092
NmuCI	GTSAC	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	845
PaeR7I	CTCGAG	1 cut(s)	710
PagI	TCATGA	1 cut(s)	1240
PcsI	WCGNNNNNNNCGW	2 cut(s)	750, 1094
PfeI	GAWTC	7 cut(s)	670, 763, 919, 979, 1196, 1229, 1324
PflFI	GACNNNGTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	307, 494, 1143
PleI	GAGTC	1 cut(s)	880
PpsI	GAGTC	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	811
Psp124BI	GAGCTC	1 cut(s)	917
Psp5II	RGGWCCY	1 cut(s)	811
Psp6I	CCWGG	1 cut(s)	999
PspGI	CCWGG	1 cut(s)	999
PspN4I	GGNNCC	2 cut(s)	6, 812
PspPI	GGNCC	5 cut(s)	581, 618, 811, 860, 1256
PspPPI	RGGWCCY	1 cut(s)	811
PspXI	VCTCGAGB	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	917
SatI	GCNGC	3 cut(s)	306, 493, 1142
Sau3AI	GATC	5 cut(s)	454, 544, 687, 907, 1243
Sau96I	GGNCC	5 cut(s)	581, 618, 811, 860, 1256
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	2 cut(s)	891, 1001
SduI	GDGCHC	2 cut(s)	232, 917
Sfr274I	CTCGAG	1 cut(s)	710
SfuI	TTCGAA	1 cut(s)	845
SgrAI	CRCCGGYG	1 cut(s)	509
SinI	GGWCC	2 cut(s)	618, 811
SlaI	CTCGAG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	383, 710
SmoI	CTYRAG	2 cut(s)	383, 710
Sse9I	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1284
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	917
StyD4I	CCNGG	2 cut(s)	889, 999
TaaI	ACNGT	3 cut(s)	553, 1214, 1226
TaiI	ACGT	2 cut(s)	363, 564
TaqI	TCGA	7 cut(s)	690, 711, 744, 753, 845, 917, 1100
TasI	AATT	6 cut(s)	591, 847, 971, 1069, 1103, 1284
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	7 cut(s)	670, 763, 919, 979, 1196, 1229, 1324
TscAI	CASTG	3 cut(s)	583, 1198, 1219
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	492, 1141
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	2 cut(s)	890, 1018
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	3 cut(s)	583, 1198, 1219
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	618, 811
XapI	RAATTY	2 cut(s)	847, 971
XbaI	TCTAGA	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XhoI	CTCGAG	1 cut(s)	710
XspI	CTAG	1 cut(s)	209
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.