Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309605.1

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 916

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309605.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

actcccgccccccaactccatcccccaacaccactcactccctccccccaactccatcccccacttcgtctccaacccccaccaccccctccgctccttcctcaaaaggctcatcttctctagaccccaaacaagtaagagccctccaatccctcaacatcccaacttccaaagacccatgcactcagctccactccaacaccaccctctgcgacgccgccaagcccttccgccacctcctctccctcaccctcgccaactgctccgacgacgtcgctctgtccttcaccgccctcaagtccctctccaccctccaatccctccacttcctcaactgccccatcgcccccattcgcttccccgccgatctcctcgcctccctccactccttctccgccgtcagcagcctccgccacctcaccggcgtctggctctcccgcctccagaacctcaccgatctaaccgtctccaacgtccaagtcaatgccagtggccctttcgtaattctcggcaacttgaagaagctcaggtccgtcaccatctcccatgccaacctcaccggtaatgttcccaaacacttgaatctcaactttacccagatcgacttttccggtaataagctcgagggaagaatacccagttccattaccatactcgaaaacctcgaaagcttgaatctttcctccaatacactcaatggcgaaatacccacttcgtttggggacctcatatccctcagaaatgtctcccttgcttcgaatttgctatcggggccgatacccgagtccatttcagccattcccggcttggttcatcttgatctgagctcgaatcagctcaatggcacaatccccaagttcctttcggatatgaggagcttgaaattcttgaatctggccaacaataacttccagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

304

Amino Acids

32.45

Weight (kDa)

9.21

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
AccBSI	CCGCTC	1 cut(s)	94
AciI	CCGC	9 cut(s)	6, 92, 218, 231, 290, 362, 395, 411, 438
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	2 cut(s)	759, 883
AcyI	GRCGYC	3 cut(s)	215, 272, 425
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	5 cut(s)	519, 582, 675, 882, 891
AjuI	GAANNNNNNNTTGG	1 cut(s)	892
AluBI	AGCT	7 cut(s)	189, 525, 621, 671, 827, 837, 878
AluI	AGCT	7 cut(s)	189, 525, 621, 671, 827, 837, 878
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	3 cut(s)	74, 471, 750
Ama87I	CYCGRG	2 cut(s)	622, 781
AoxI	GGCC	3 cut(s)	492, 772, 896
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	759, 883
AsiGI	ACCGGT	1 cut(s)	559
AspS9I	GGNCC	4 cut(s)	493, 530, 723, 772
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	6 cut(s)	240, 279, 411, 444, 528, 549
AsuII	TTCGAA	1 cut(s)	757
AvaI	CYCGRG	2 cut(s)	622, 781
AvaII	GGWCC	2 cut(s)	530, 723
BaeI	ACNNNNGTAYC	2 cut(s)	769, 802
BalI	TGGCCA	1 cut(s)	898
BanII	GRGCYC	2 cut(s)	144, 829
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	4 cut(s)	27, 63, 349, 547
BceAI	ACGGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	913
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	3 cut(s)	74, 471, 750
BfaI	CTAG	1 cut(s)	121
BisI	GCNGC	2 cut(s)	218, 405
BlsI	GCNGC	2 cut(s)	219, 406
Bme1390I	CCNGG	2 cut(s)	803, 913
Bme18I	GGWCC	2 cut(s)	530, 723
BmeT110I	CYCGRG	2 cut(s)	622, 781
BmgT120I	GGNCC	4 cut(s)	493, 530, 723, 772
BmiI	GGNNCC	2 cut(s)	724, 773
BmrFI	CCNGG	2 cut(s)	803, 913
BmrI	ACTGGG	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	526
Bpu14I	TTCGAA	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	803
BsaHI	GRCGYC	3 cut(s)	215, 272, 425
BsaWI	WCCGGW	2 cut(s)	559, 610
BsaXI	ACNNNNNCTCC	6 cut(s)	54, 84, 226, 256, 376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	2 cut(s)	421, 559
Bse1I	ACTGG	2 cut(s)	488, 638
BseBI	CCWGG	1 cut(s)	913
BseGI	GGATG	3 cut(s)	19, 55, 158
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	4 cut(s)	199, 540, 750, 814
BseNI	ACTGG	2 cut(s)	488, 638
BseRI	GAGGAG	3 cut(s)	229, 361, 888
BseXI	GCAGC	1 cut(s)	416
BshFI	GGCC	3 cut(s)	494, 774, 898
BshTI	ACCGGT	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	829
BsiHKCI	CYCGRG	2 cut(s)	622, 781
BsiSI	CCGG	4 cut(s)	422, 560, 611, 803
BslFI	GGGAC	2 cut(s)	285, 736
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	3 cut(s)	74, 471, 750
BsmBI	CGTCTC	2 cut(s)	74, 471
BsmFI	GGGAC	2 cut(s)	285, 736
BsnI	GGCC	3 cut(s)	494, 774, 898
BsoBI	CYCGRG	2 cut(s)	622, 781
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	2 cut(s)	144, 829
Bsp143I	GATC	4 cut(s)	366, 456, 599, 819
BspACI	CCGC	9 cut(s)	6, 92, 218, 231, 290, 362, 395, 411, 438
BspANI	GGCC	3 cut(s)	494, 774, 898
BspCNI	CTCAG	4 cut(s)	198, 539, 749, 815
BspLI	GGNNCC	2 cut(s)	724, 773
BspT104I	TTCGAA	1 cut(s)	757
BsrBI	CCGCTC	1 cut(s)	94
BsrFI	RCCGGY	2 cut(s)	421, 559
BsrI	ACTGG	2 cut(s)	488, 638
BssAI	RCCGGY	2 cut(s)	421, 559
BssMI	GATC	4 cut(s)	366, 456, 599, 819
BssNI	GRCGYC	3 cut(s)	215, 272, 425
Bst2UI	CCWGG	1 cut(s)	913
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	3 cut(s)	215, 272, 425
BstBI	TTCGAA	1 cut(s)	757
BstDEI	CTNAG	4 cut(s)	185, 526, 736, 823
BstF5I	GGATG	3 cut(s)	19, 55, 158
BstKTI	GATC	4 cut(s)	369, 459, 602, 822
BstMAI	GTCTC	3 cut(s)	74, 471, 750
BstMBI	GATC	4 cut(s)	366, 456, 599, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 771
BstNI	CCWGG	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	801
BstV1I	GCAGC	1 cut(s)	416
BsuRI	GGCC	3 cut(s)	494, 774, 898
BtgZI	GCGATG	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	19, 55, 158
BtsIMutI	CAGTG	1 cut(s)	495
Cfr10I	RCCGGY	2 cut(s)	421, 559
Cfr13I	GGNCC	4 cut(s)	493, 530, 723, 772
CseI	GACGC	2 cut(s)	223, 414
CspAI	ACCGGT	1 cut(s)	559
CspCI	CAANNNNNGTGG	4 cut(s)	471, 506, 699, 734
CviAII	CATG	2 cut(s)	179, 547
DdeI	CTNAG	4 cut(s)	185, 526, 736, 823
DpnI	GATC	4 cut(s)	368, 458, 601, 821
DpnII	GATC	4 cut(s)	366, 456, 599, 819
EaeI	YGGCCR	1 cut(s)	896
EciI	GGCGGA	3 cut(s)	220, 384, 400
Ecl136II	GAGCTC	1 cut(s)	827
Eco24I	GRGCYC	2 cut(s)	144, 829
Eco47I	GGWCC	2 cut(s)	530, 723
Eco53kI	GAGCTC	1 cut(s)	827
Eco88I	CYCGRG	2 cut(s)	622, 781
EcoICRI	GAGCTC	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	723
EcoT38I	GRGCYC	2 cut(s)	144, 829
Esp3I	CGTCTC	2 cut(s)	74, 471
FaeI	CATG	2 cut(s)	182, 550
FaiI	YATR	5 cut(s)	180, 548, 652, 730, 871
FaqI	GGGAC	2 cut(s)	285, 736
FatI	CATG	2 cut(s)	178, 546
FauI	CCCGC	3 cut(s)	13, 369, 445
Fnu4HI	GCNGC	2 cut(s)	218, 405
FokI	GGATG	3 cut(s)	6, 42, 145
FriOI	GRGCYC	2 cut(s)	144, 829
Fsp4HI	GCNGC	2 cut(s)	218, 405
FspBI	CTAG	1 cut(s)	121
GluI	GCNGC	2 cut(s)	218, 405
GsuI	CTGGAG	1 cut(s)	427
HaeIII	GGCC	3 cut(s)	494, 774, 898
HapII	CCGG	4 cut(s)	422, 560, 611, 803
HgaI	GACGC	2 cut(s)	223, 414
Hin1I	GRCGYC	3 cut(s)	215, 272, 425
Hin1II	CATG	2 cut(s)	182, 550
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	5 cut(s)	582, 675, 784, 831, 891
HpaII	CCGG	4 cut(s)	422, 560, 611, 803
HphI	GGTGA	6 cut(s)	240, 279, 411, 444, 528, 549
Hpy188I	TCNGA	4 cut(s)	267, 739, 824, 867
Hpy188III	TCNNGA	4 cut(s)	121, 444, 817, 888
Hpy99I	CGWCG	4 cut(s)	217, 271, 274, 277
HpyAV	CCTTC	4 cut(s)	107, 237, 294, 399
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	2 cut(s)	272, 473
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 771
HpyF3I	CTNAG	4 cut(s)	185, 526, 736, 823
HpySE526I	ACGT	2 cut(s)	272, 473
Hsp92I	GRCGYC	3 cut(s)	215, 272, 425
Hsp92II	CATG	2 cut(s)	182, 550
Kzo9I	GATC	4 cut(s)	366, 456, 599, 819
LmnI	GCTCC	4 cut(s)	99, 194, 268, 875
Lsp1109I	GCAGC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	121
MaeII	ACGT	2 cut(s)	272, 473
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	4 cut(s)	368, 458, 601, 821
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	4 cut(s)	366, 456, 599, 819
MboII	GAAGA	3 cut(s)	107, 531, 641
MhlI	GDGCHC	2 cut(s)	144, 829
MlsI	TGGCCA	1 cut(s)	898
MluCI	AATT	3 cut(s)	503, 759, 883
MluNI	TGGCCA	1 cut(s)	898
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	4 cut(s)	97, 221, 290, 494
Mox20I	TGGCCA	1 cut(s)	898
MscI	TGGCCA	1 cut(s)	898
Msp20I	TGGCCA	1 cut(s)	898
MspI	CCGG	4 cut(s)	422, 560, 611, 803
MspR9I	CCNGG	2 cut(s)	803, 913
MvaI	CCWGG	1 cut(s)	913
MwoI	GCNNNNNNNGC	2 cut(s)	410, 771
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	4 cut(s)	366, 456, 599, 819
NlaIII	CATG	2 cut(s)	182, 550
NlaIV	GGNNCC	2 cut(s)	724, 773
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	1 cut(s)	534
NspV	TTCGAA	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	582, 675, 831, 891
PflFI	GACNNNGTC	1 cut(s)	271
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	2 cut(s)	219, 406
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	723
Psp124BI	GAGCTC	1 cut(s)	829
Psp5II	RGGWCCY	1 cut(s)	723
PspN4I	GGNNCC	2 cut(s)	724, 773
PspPI	GGNCC	4 cut(s)	493, 530, 723, 772
PspPPI	RGGWCCY	1 cut(s)	723
PspXI	VCTCGAGB	1 cut(s)	622
PsyI	GACNNNGTC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	829
SatI	GCNGC	2 cut(s)	218, 405
Sau3AI	GATC	4 cut(s)	366, 456, 599, 819
Sau96I	GGNCC	4 cut(s)	493, 530, 723, 772
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	803, 913
SduI	GDGCHC	2 cut(s)	144, 829
Sfr274I	CTCGAG	1 cut(s)	622
SfuI	TTCGAA	1 cut(s)	757
SgrAI	CRCCGGYG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	530, 723
SlaI	CTCGAG	1 cut(s)	622
SmlI	CTYRAG	2 cut(s)	295, 622
SmoI	CTYRAG	2 cut(s)	295, 622
Sse9I	AATT	3 cut(s)	503, 759, 883
SsiI	CCGC	9 cut(s)	6, 92, 218, 231, 290, 362, 395, 411, 438
SspMI	CTAG	1 cut(s)	121
SstI	GAGCTC	1 cut(s)	829
StyD4I	CCNGG	1 cut(s)	801
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	2 cut(s)	275, 476
TaqI	TCGA	6 cut(s)	602, 623, 656, 665, 757, 829
TasI	AATT	3 cut(s)	503, 759, 883
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	4 cut(s)	582, 675, 831, 891
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	1 cut(s)	802
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	271
VpaK11BI	GGWCC	2 cut(s)	530, 723
XapI	RAATTY	2 cut(s)	759, 883
XbaI	TCTAGA	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	804
XhoI	CTCGAG	1 cut(s)	622
XspI	CTAG	1 cut(s)	121
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.