Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015358

Physical Location & Seq

Genomic Coordinates Reverse (-)

8579201 .. 8580813

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAACCACCACCATTACTCCTCACTCTCCTCCACCTCCTCCTCCTCCTCCTCTCCTCCACCACCCTCTCCGCCACCACCCCCAATACCACTCACTCCCGCCACCCAACTCCATCCCCCACTTCCTCTCCAACCCCCAACACCACTCACTCCCTCCCCCCAACTCCATCCCCCACTTCCTCTCCAACCCCCACCACTCCCTCCTCAAAAGGCTCATCTTCTCTAGACCCCAAACAAGTAAGAGCCCTCCAATCCCTCAACATCCCAACTTCCAAAGACCCATGCACTCAGCTCCACTCCAACACCTCCCTCTGCGACGCCGCCAAGCCCTTCCGCCACCTCCTCTCCCTCACCCTCGCCAACTGCTCCGACGACGTCGCTCTGTCCTTCACCGCCCTCAAGTCCCTCTCCACCCTCCAATCCCTCCACTTCCTCAACTGCCCTATCGCCCCCATTCGCTTCCCCGCCGATCTCGTCGCCTCCCTCCACTCCTTCTCCGCCGTCAGCAGCCTCCGCCACCTCACCGGCGTCTGGCTCTCCCGCCTCCAGAACCTCACCGATCTAACCGTCTCCAACGTCCAAGTCAATGCCAGTGGCCCTTTCGTAATTCTCGGCAACTTGAAGAAGCTCAGGTCCGTCACTATATCCCATGCCAACCTCACCGGTAATATTCCCAAACACTTGAATCTCAACTTTACCCAGATCGATTTTTCGGGTAATAAGCTCGAGGGAAGAATACCCAGTTCCATTACCATACTCGAAAACCTCGAAAGCTTGAATCTTTCTTCGAACACACTCAATGGCGAAATACCCACTTCGTTTGGGGACCTCATATCCCTCAGAAATGTCTCCCTTGCTTCGAATTTGCTATCTGGGCCGATACCCGAGTCGATTTCAGCCATTCCCGGCTTGGTTCATCTTGATCTGAGCTCGAATCAGCTCAATGGCACAATCCCCAAGTTCCTTTCGGATATGAAGAGCTTGAAATTCTTGAATCTGGCTAACAATAACTTCCAGGGGGTCGTTCCTTTCAATGTGTCATTCATTAGTAAGTTGGCTTTGTTCAAGATTGGTAGGAACAGCAATTTGTGCTACAACCATTCGGTTCTTTCGTCGAAATTGAAGCTCGGCATTGCTCCCTGTGATAAACATGGGCTGCCAATGTCGCCTCCTCCGGCGAAAGAGGATAGTTCAGCGGATGACAGCAGTGATTCGGATTATGATGACAATGATGGGGATAGTTCCCAAAAACAGGACCATCATCATGGGCCTAATAAGGTAGTTCTTGGTGTGGCAATTGGGCTTTCTTCCCTTGTCTTCCTCATAGTTTTCTTGATTCTTCTATCGAAGTGGTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002833 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043207 GO:0043900 GO:0043902 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0080134 GO:1900424 GO:1900426 GO:1902288 GO:1902290

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_4 LRR_8

Protein Analysis

454

Amino Acids

48.4

Weight (kDa)

8.15

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	104 - 345	4.8e-06	Leucine-rich repeat region
LRR_8	PF13855	279 - 338	3e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18760 AT5G45770
fragaria_vesca	FvH4_3g07430
malus_domestica	MD10G1276600.v1.1
prunus_persica	Prupe.4G065600_v2.0.a1
pyrus_communis	pycom10g23100
rosa_chinensis	RchiOBHm_Chr5g0011431
rosa_laevigata	RLG00000031834
rosa_multiflora	Rmu_co8309605.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065010
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5AG088800 Rh5BG084000 Rh5CG097400 Rh5DG083900
rosa_wichuraiana	Rw5G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AcsI	RAATTY	2 cut(s)	862, 986
AcyI	GRCGYC	3 cut(s)	318, 375, 528
AfiI	CCNNNNNNNGG	2 cut(s)	531, 1252
AgeI	ACCGGT	1 cut(s)	662
AgsI	TTSAA	8 cut(s)	622, 685, 778, 985, 994, 1033, 1066, 1123
AjnI	CCWGG	1 cut(s)	1014
AluBI	AGCT	8 cut(s)	292, 628, 724, 774, 930, 940, 981, 1126
AluI	AGCT	8 cut(s)	292, 628, 724, 774, 930, 940, 981, 1126
Alw21I	GWGCWC	1 cut(s)	932
Alw26I	GTCTC	2 cut(s)	574, 853
Ama87I	CYCGRG	2 cut(s)	725, 884
AoxI	GGCC	3 cut(s)	595, 875, 1268
ApeKI	GCWGC	2 cut(s)	507, 1156
ApoI	RAATTY	2 cut(s)	862, 986
AsiGI	ACCGGT	1 cut(s)	662
AspS9I	GGNCC	6 cut(s)	596, 633, 826, 875, 1255, 1268
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	5 cut(s)	343, 382, 514, 547, 652
AsuII	TTCGAA	2 cut(s)	788, 860
AvaI	CYCGRG	2 cut(s)	725, 884
AvaII	GGWCC	3 cut(s)	633, 826, 1255
BaeI	ACNNNNGTAYC	2 cut(s)	872, 905
BanII	GRGCYC	2 cut(s)	247, 932
BbsI	GAAGAC	1 cut(s)	1309
Bbv12I	GWGCWC	1 cut(s)	932
BbvI	GCAGC	2 cut(s)	519, 1143
BccI	CCATC	4 cut(s)	121, 175, 1226, 1266
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	1 cut(s)	1016
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	2 cut(s)	574, 853
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	321, 508, 1157
BlsI	GCNGC	3 cut(s)	322, 509, 1158
Bme1390I	CCNGG	2 cut(s)	906, 1016
Bme18I	GGWCC	3 cut(s)	633, 826, 1255
BmeT110I	CYCGRG	2 cut(s)	725, 884
BmgT120I	GGNCC	6 cut(s)	596, 633, 826, 875, 1255, 1268
BmiI	GGNNCC	2 cut(s)	6, 827
BmrFI	CCNGG	2 cut(s)	906, 1016
BmrI	ACTGGG	1 cut(s)	735
BmuI	ACTGGG	1 cut(s)	735
BpiI	GAAGAC	1 cut(s)	1309
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	1 cut(s)	629
Bpu14I	TTCGAA	2 cut(s)	788, 860
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	906
Bsa29I	ATCGAT	1 cut(s)	705
BsaHI	GRCGYC	3 cut(s)	318, 375, 528
BsaJI	CCNNGG	1 cut(s)	1015
BsaWI	WCCGGW	1 cut(s)	662
BsaXI	ACNNNNNCTCC	9 cut(s)	33, 112, 142, 166, 196, 329, 359, 479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	531, 1252
Bse118I	RCCGGY	2 cut(s)	524, 662
Bse1I	ACTGG	2 cut(s)	591, 741
Bse3DI	GCAATG	1 cut(s)	1131
BseBI	CCWGG	1 cut(s)	1016
BseCI	ATCGAT	1 cut(s)	705
BseDI	CCNNGG	1 cut(s)	1015
BseGI	GGATG	4 cut(s)	113, 167, 261, 1204
BseLI	CCNNNNNNNGG	2 cut(s)	531, 1252
BseMI	GCAATG	1 cut(s)	1131
BseMII	CTCAG	4 cut(s)	302, 643, 853, 917
BseNI	ACTGG	2 cut(s)	591, 741
BseXI	GCAGC	2 cut(s)	519, 1143
BshFI	GGCC	3 cut(s)	597, 877, 1270
BshTI	ACCGGT	1 cut(s)	662
BshVI	ATCGAT	1 cut(s)	705
BsiHKAI	GWGCWC	1 cut(s)	932
BsiHKCI	CYCGRG	2 cut(s)	725, 884
BsiSI	CCGG	4 cut(s)	525, 663, 906, 1175
BslFI	GGGAC	2 cut(s)	388, 839
BslI	CCNNNNNNNGG	2 cut(s)	531, 1252
BsmAI	GTCTC	2 cut(s)	574, 853
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	2 cut(s)	388, 839
BsnI	GGCC	3 cut(s)	597, 877, 1270
BsoBI	CYCGRG	2 cut(s)	725, 884
Bsp119I	TTCGAA	2 cut(s)	788, 860
Bsp1286I	GDGCHC	2 cut(s)	247, 932
Bsp143I	GATC	4 cut(s)	469, 559, 702, 922
BspANI	GGCC	3 cut(s)	597, 877, 1270
BspCNI	CTCAG	4 cut(s)	301, 642, 852, 918
BspDI	ATCGAT	1 cut(s)	705
BspLI	GGNNCC	2 cut(s)	6, 827
BspQI	GCTCTTC	1 cut(s)	971
BspT104I	TTCGAA	2 cut(s)	788, 860
BsrDI	GCAATG	1 cut(s)	1131
BsrFI	RCCGGY	2 cut(s)	524, 662
BsrI	ACTGG	2 cut(s)	591, 741
BssAI	RCCGGY	2 cut(s)	524, 662
BssECI	CCNNGG	1 cut(s)	1015
BssMI	GATC	4 cut(s)	469, 559, 702, 922
BssNI	GRCGYC	3 cut(s)	318, 375, 528
Bst2UI	CCWGG	1 cut(s)	1016
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	971
BstACI	GRCGYC	3 cut(s)	318, 375, 528
BstAPI	GCANNNNNTGC	1 cut(s)	1089
BstBI	TTCGAA	2 cut(s)	788, 860
BstDEI	CTNAG	4 cut(s)	288, 629, 839, 926
BstF5I	GGATG	4 cut(s)	113, 167, 261, 1204
BstKTI	GATC	4 cut(s)	472, 562, 705, 925
BstMAI	GTCTC	2 cut(s)	574, 853
BstMBI	GATC	4 cut(s)	469, 559, 702, 922
BstMWI	GCNNNNNNNGC	4 cut(s)	513, 874, 1089, 1165
BstNI	CCWGG	1 cut(s)	1016
BstSCI	CCNGG	2 cut(s)	904, 1014
BstV1I	GCAGC	2 cut(s)	519, 1143
BstV2I	GAAGAC	1 cut(s)	1309
BstXI	CCANNNNNNTGG	1 cut(s)	1265
Bsu15I	ATCGAT	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	597, 877, 1270
BsuTUI	ATCGAT	1 cut(s)	705
BtsCI	GGATG	4 cut(s)	113, 167, 261, 1204
BtsI	GCAGTG	1 cut(s)	1213
BtsIMutI	CAGTG	2 cut(s)	598, 1213
Cfr10I	RCCGGY	2 cut(s)	524, 662
Cfr13I	GGNCC	6 cut(s)	596, 633, 826, 875, 1255, 1268
ClaI	ATCGAT	1 cut(s)	705
CseI	GACGC	2 cut(s)	326, 517
CspAI	ACCGGT	1 cut(s)	662
CspCI	CAANNNNNGTGG	4 cut(s)	574, 609, 802, 837
CviAII	CATG	4 cut(s)	282, 650, 1151, 1265
DdeI	CTNAG	4 cut(s)	288, 629, 839, 926
DpnI	GATC	4 cut(s)	471, 561, 704, 924
DpnII	GATC	4 cut(s)	469, 559, 702, 922
Eam1104I	CTCTTC	1 cut(s)	971
EarI	CTCTTC	1 cut(s)	971
EciI	GGCGGA	4 cut(s)	61, 323, 487, 503
Ecl136II	GAGCTC	1 cut(s)	930
Eco24I	GRGCYC	2 cut(s)	247, 932
Eco47I	GGWCC	3 cut(s)	633, 826, 1255
Eco53kI	GAGCTC	1 cut(s)	930
Eco88I	CYCGRG	2 cut(s)	725, 884
EcoICRI	GAGCTC	1 cut(s)	930
EcoO109I	RGGNCCY	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	247, 932
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	4 cut(s)	285, 653, 1154, 1268
FaqI	GGGAC	2 cut(s)	388, 839
FatI	CATG	4 cut(s)	281, 649, 1150, 1264
FauI	CCCGC	3 cut(s)	107, 472, 548
Fnu4HI	GCNGC	3 cut(s)	321, 508, 1157
FokI	GGATG	4 cut(s)	100, 154, 248, 1211
FriOI	GRGCYC	2 cut(s)	247, 932
Fsp4HI	GCNGC	3 cut(s)	321, 508, 1157
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	321, 508, 1157
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	3 cut(s)	597, 877, 1270
HapII	CCGG	4 cut(s)	525, 663, 906, 1175
HgaI	GACGC	2 cut(s)	326, 517
Hin1I	GRCGYC	3 cut(s)	318, 375, 528
Hin1II	CATG	4 cut(s)	285, 653, 1154, 1268
HindIII	AAGCTT	1 cut(s)	772
HinfI	GANTC	7 cut(s)	685, 778, 887, 934, 994, 1211, 1336
HpaII	CCGG	4 cut(s)	525, 663, 906, 1175
HphI	GGTGA	5 cut(s)	343, 382, 514, 547, 652
Hpy188I	TCNGA	5 cut(s)	370, 842, 927, 970, 1216
Hpy188III	TCNNGA	6 cut(s)	224, 547, 920, 991, 1066, 1333
Hpy99I	CGWCG	6 cut(s)	320, 374, 377, 380, 479, 1117
HpyAV	CCTTC	3 cut(s)	340, 397, 502
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	2 cut(s)	375, 576
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	4 cut(s)	513, 874, 1089, 1165
HpyF3I	CTNAG	4 cut(s)	288, 629, 839, 926
HpySE526I	ACGT	2 cut(s)	375, 576
Hsp92I	GRCGYC	3 cut(s)	318, 375, 528
Hsp92II	CATG	4 cut(s)	285, 653, 1154, 1268
Kzo9I	GATC	4 cut(s)	469, 559, 702, 922
LguI	GCTCTTC	1 cut(s)	971
LmnI	GCTCC	3 cut(s)	297, 371, 1141
Lsp1109I	GCAGC	2 cut(s)	519, 1143
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	375, 576
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	4 cut(s)	471, 561, 704, 924
MboI	GATC	4 cut(s)	469, 559, 702, 922
MboII	GAAGA	8 cut(s)	210, 634, 744, 777, 988, 1299, 1309, 1331
MfeI	CAATTG	1 cut(s)	1296
MhlI	GDGCHC	2 cut(s)	247, 932
MluCI	AATT	6 cut(s)	606, 862, 986, 1084, 1118, 1296
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	5 cut(s)	155, 209, 324, 393, 597
MslI	CAYNNNNRTG	1 cut(s)	1263
MspA1I	CMGCKG	1 cut(s)	1196
MspI	CCGG	4 cut(s)	525, 663, 906, 1175
MspR9I	CCNGG	2 cut(s)	906, 1016
MunI	CAATTG	1 cut(s)	1296
MvaI	CCWGG	1 cut(s)	1016
MwoI	GCNNNNNNNGC	4 cut(s)	513, 874, 1089, 1165
NciI	CCSGG	1 cut(s)	906
NdeII	GATC	4 cut(s)	469, 559, 702, 922
NlaIII	CATG	4 cut(s)	285, 653, 1154, 1268
NlaIV	GGNNCC	2 cut(s)	6, 827
NmeAIII	GCCGAG	2 cut(s)	591, 1107
NmuCI	GTSAC	1 cut(s)	637
NspV	TTCGAA	2 cut(s)	788, 860
PaeR7I	CTCGAG	1 cut(s)	725
PciSI	GCTCTTC	1 cut(s)	971
PcsI	WCGNNNNNNNCGW	2 cut(s)	765, 1109
PfeI	GAWTC	6 cut(s)	685, 778, 934, 994, 1211, 1336
PflFI	GACNNNGTC	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	322, 509, 1158
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PpuMI	RGGWCCY	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	932
Psp5II	RGGWCCY	1 cut(s)	826
Psp6I	CCWGG	1 cut(s)	1014
PspGI	CCWGG	1 cut(s)	1014
PspN4I	GGNNCC	2 cut(s)	6, 827
PspPI	GGNCC	6 cut(s)	596, 633, 826, 875, 1255, 1268
PspPPI	RGGWCCY	1 cut(s)	826
PspXI	VCTCGAGB	1 cut(s)	725
PsyI	GACNNNGTC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	1263
SacI	GAGCTC	1 cut(s)	932
SapI	GCTCTTC	1 cut(s)	971
SatI	GCNGC	3 cut(s)	321, 508, 1157
Sau3AI	GATC	4 cut(s)	469, 559, 702, 922
Sau96I	GGNCC	6 cut(s)	596, 633, 826, 875, 1255, 1268
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	2 cut(s)	906, 1016
SduI	GDGCHC	2 cut(s)	247, 932
Sfr274I	CTCGAG	1 cut(s)	725
SfuI	TTCGAA	2 cut(s)	788, 860
SgrAI	CRCCGGYG	1 cut(s)	524
SinI	GGWCC	3 cut(s)	633, 826, 1255
SlaI	CTCGAG	1 cut(s)	725
SmiMI	CAYNNNNRTG	1 cut(s)	1263
SmlI	CTYRAG	2 cut(s)	398, 725
SmoI	CTYRAG	2 cut(s)	398, 725
Sse9I	AATT	6 cut(s)	606, 862, 986, 1084, 1118, 1296
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	932
StyD4I	CCNGG	2 cut(s)	904, 1014
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	2 cut(s)	378, 579
TasI	AATT	6 cut(s)	606, 862, 986, 1084, 1118, 1296
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	6 cut(s)	685, 778, 934, 994, 1211, 1336
TscAI	CASTG	2 cut(s)	598, 1213
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	507, 1156
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	3 cut(s)	905, 989, 1033
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	2 cut(s)	598, 1213
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	633, 826, 1255
XapI	RAATTY	2 cut(s)	862, 986
XbaI	TCTAGA	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XhoI	CTCGAG	1 cut(s)	725
XspI	CTAG	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.