Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

10336566 .. 10338674

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGATGAGATGGGGAAGAAAGAAACCTGTTTCTTCTTCTTCTTCTTCCGGGTTGTCTCGTGCTCTTCCTGTTTCTTGGTTTTCAAAGTTAAGTGGTTCTTCTGACTTGAAACCTGCAAAAGAGAAGAAGCAAGATGAAAAAGCTAGCCAGAACATATCTGTAAAAACTTCCTTGAGTTCTACTACACGTCGAAGTGATATTCATGAGAACAGCAAAAGGTTTCAAAGAGTATCAGTAGAAAAGGAGAACTCTGCAACAAGATCAGCAGATAAAGAGTCGAATGAGAAGTTTGAAGAGATAATGAGCAGTGTGAGGAAGAAAGTAAGAGATTTCCAAAAAGAGACATGTGGTTTTCTGGAAGTGGAGGCAATGGATAGAGACAACGGAACTGTGATCCTGACGCCAAGAATTCAGGTGAACAGAGATAAACAGAGATGTGAGAGACGTGACCAAAGGCTTCTTGAACAAAAGCCAAAGAGATCAGAACAAGACGCGGGGGTCAAGGTGAAAAAACCAGCTAGAAGGACAGGTACAGGAGGTTACAGTAGAGAAGATTCCGTGATTCTTGGTCATACCATAACAAAACCGGCTCATCAGTGGGAAAAGCTCAAGGAAGTCAAACTAAGAGAAGTGAAGCTGAAGGCTGACCAACAGAGGAAATCTCTGTACCTAAAAAGGGAGCTAAACAGAATAGGAACAAAAGAAAACAACAAAGTTAGAGTTTTTTCACCAAGAGCATCTGAAAAATGCAGAGTTAAAGCTATTGAAGACTTGAAAAAGGCCAAACAGAGAGCACGGGAGCACGAGCTTCTGATAGAAACAGCAGATGGAGGAATGGAGAACGAAAGCTTTGCAGTAGTGAAATGCTCAAGTGATCCTCAGAAGGATTTTAGAGATTCAATGATTGAGATGATTATGGAGAATGGTATCAACCATCCAGAAGAACTCAAAGAGCTTCTGGTTTGTTATCTCAGACTCAATACAGATGAATATCATGACATGATCATCAGTGTGTTCCAGCAGGTGCATAATGATTTTAATTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

349

Amino Acids

40.37

Weight (kDa)

9.62

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	290 - 344	9.6e-23	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1012
AasI	GACNNNNNNGTC	1 cut(s)	497
Acc36I	ACCTGC	2 cut(s)	121, 1012
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	494
AclWI	GGATC	2 cut(s)	388, 869
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	2 cut(s)	532, 668
AfiI	CCNNNNNNNGG	1 cut(s)	676
AflIII	ACRYGT	2 cut(s)	185, 344
AgsI	TTSAA	8 cut(s)	84, 109, 224, 293, 464, 767, 775, 900
AjiI	CACGTC	2 cut(s)	188, 446
AluBI	AGCT	9 cut(s)	143, 518, 607, 637, 682, 761, 808, 849, 955
AluI	AGCT	9 cut(s)	143, 518, 607, 637, 682, 761, 808, 849, 955
Alw21I	GWGCWC	3 cut(s)	64, 796, 804
Alw26I	GTCTC	4 cut(s)	60, 335, 372, 436
AlwI	GGATC	2 cut(s)	388, 869
AoxI	GGCC	1 cut(s)	780
ApoI	RAATTY	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	3 cut(s)	427, 517, 720
AsuNHI	GCTAGC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	514, 546
BauI	CACGAG	2 cut(s)	57, 803
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	3 cut(s)	64, 796, 804
BccI	CCATC	3 cut(s)	3, 821, 942
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	60, 335, 372, 436
BfaI	CTAG	2 cut(s)	144, 519
BfuAI	ACCTGC	2 cut(s)	121, 1012
Bme1390I	CCNGG	1 cut(s)	49
BmgBI	CACGTC	2 cut(s)	188, 446
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	1 cut(s)	746
BmtI	GCTAGC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	774
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
BpuEI	CTTGAG	3 cut(s)	193, 593, 853
BpuMI	CCSGG	1 cut(s)	49
BsaBI	GATNNNNATC	1 cut(s)	990
BsaHI	GRCGYC	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	676
Bse118I	RCCGGY	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	990
BseGI	GGATG	1 cut(s)	934
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	1 cut(s)	676
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	893, 985
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	1 cut(s)	782
BsiHKAI	GWGCWC	3 cut(s)	64, 796, 804
BsiSI	CCGG	2 cut(s)	48, 587
BslI	CCNNNNNNNGG	1 cut(s)	676
BsmAI	GTCTC	4 cut(s)	60, 335, 372, 436
BsmBI	CGTCTC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	782
Bsp1286I	GDGCHC	3 cut(s)	64, 796, 804
Bsp143I	GATC	5 cut(s)	260, 393, 479, 874, 1002
BspACI	CCGC	1 cut(s)	494
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	2 cut(s)	892, 984
BspFNI	CGCG	1 cut(s)	494
BspHI	TCATGA	2 cut(s)	202, 994
BspMI	ACCTGC	2 cut(s)	121, 1012
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	388, 869
BspQI	GCTCTTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	586
BssMI	GATC	5 cut(s)	260, 393, 479, 874, 1002
BssNI	GRCGYC	1 cut(s)	401
BssSI	CACGAG	2 cut(s)	57, 803
Bst2BI	CACGAG	2 cut(s)	57, 803
Bst4CI	ACNGT	2 cut(s)	391, 545
Bst6I	CTCTTC	2 cut(s)	69, 288
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	3 cut(s)	623, 879, 971
BstF5I	GGATG	1 cut(s)	934
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	5 cut(s)	263, 396, 482, 877, 1005
BstMAI	GTCTC	4 cut(s)	60, 335, 372, 436
BstMBI	GATC	5 cut(s)	260, 393, 479, 874, 1002
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	47
BstUI	CGCG	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	774
BsuRI	GGCC	1 cut(s)	782
BtrI	CACGTC	2 cut(s)	188, 446
BtsCI	GGATG	1 cut(s)	934
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	3 cut(s)	313, 602, 1015
BveI	ACCTGC	2 cut(s)	121, 1012
Cac8I	GCNNGC	1 cut(s)	145
CciI	TCATGA	2 cut(s)	202, 994
Cfr10I	RCCGGY	1 cut(s)	586
CseI	GACGC	2 cut(s)	409, 500
Csp6I	GTAC	2 cut(s)	531, 667
CviAII	CATG	4 cut(s)	203, 345, 995, 1000
CviQI	GTAC	2 cut(s)	531, 667
DdeI	CTNAG	3 cut(s)	623, 879, 971
DpnI	GATC	5 cut(s)	262, 395, 481, 876, 1004
DpnII	GATC	5 cut(s)	260, 393, 479, 874, 1002
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
Eam1104I	CTCTTC	2 cut(s)	69, 288
EarI	CTCTTC	2 cut(s)	69, 288
Eco57I	CTGAAG	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	4 cut(s)	206, 348, 998, 1003
FaiI	YATR	9 cut(s)	155, 204, 346, 573, 578, 917, 996, 1001, 1029
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FatI	CATG	4 cut(s)	202, 344, 994, 999
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	1002
FokI	GGATG	1 cut(s)	921
FspBI	CTAG	2 cut(s)	144, 519
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	2 cut(s)	48, 587
HgaI	GACGC	2 cut(s)	409, 500
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	4 cut(s)	206, 348, 998, 1003
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	5 cut(s)	275, 554, 562, 896, 975
HpaII	CCGG	2 cut(s)	48, 587
HphI	GGTGA	3 cut(s)	427, 517, 720
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	6 cut(s)	103, 484, 742, 813, 882, 974
Hpy188III	TCNNGA	6 cut(s)	203, 356, 397, 461, 938, 995
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	516, 634, 877
HpyCH4III	ACNGT	2 cut(s)	391, 545
HpyCH4IV	ACGT	2 cut(s)	187, 445
HpyCH4V	TGCA	5 cut(s)	116, 254, 750, 854, 1027
HpyF3I	CTNAG	3 cut(s)	623, 879, 971
HpySE526I	ACGT	2 cut(s)	187, 445
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	4 cut(s)	206, 348, 998, 1003
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	5 cut(s)	260, 393, 479, 874, 1002
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	679, 799
LweI	GCATC	1 cut(s)	746
MaeI	CTAG	2 cut(s)	144, 519
MaeII	ACGT	2 cut(s)	187, 445
MaeIII	GTNAC	2 cut(s)	446, 539
MalI	GATC	5 cut(s)	262, 395, 481, 876, 1004
MboI	GATC	5 cut(s)	260, 393, 479, 874, 1002
MhlI	GDGCHC	3 cut(s)	64, 796, 804
MluCI	AATT	2 cut(s)	408, 1039
MlyI	GAGTC	2 cut(s)	284, 969
MnlI	CCTC	6 cut(s)	306, 358, 530, 648, 824, 888
MseI	TTAA	4 cut(s)	89, 756, 1038, 1048
MslI	CAYNNNNRTG	1 cut(s)	1010
MspI	CCGG	2 cut(s)	48, 587
MspR9I	CCNGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	494
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	5 cut(s)	260, 393, 479, 874, 1002
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	206, 348, 998, 1003
NmuCI	GTSAC	1 cut(s)	446
NspI	RCATGY	1 cut(s)	348
PagI	TCATGA	2 cut(s)	202, 994
PaqCI	CACCTGC	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	554, 562, 896
PleI	GAGTC	2 cut(s)	283, 969
PpsI	GAGTC	2 cut(s)	283, 969
PscI	ACATGT	1 cut(s)	344
RsaI	GTAC	2 cut(s)	532, 668
RsaNI	GTAC	2 cut(s)	531, 667
RseI	CAYNNNNRTG	1 cut(s)	1010
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	89, 756, 1038, 1048
Sau3AI	GATC	5 cut(s)	260, 393, 479, 874, 1002
SchI	GAGTC	2 cut(s)	284, 969
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	64, 796, 804
SfaNI	GCATC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	1010
SmlI	CTYRAG	3 cut(s)	172, 608, 868
SmoI	CTYRAG	3 cut(s)	172, 608, 868
Sse9I	AATT	2 cut(s)	408, 1039
SsiI	CCGC	1 cut(s)	494
SspMI	CTAG	2 cut(s)	144, 519
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	391, 545
TaiI	ACGT	2 cut(s)	190, 448
TaqI	TCGA	2 cut(s)	190, 278
TasI	AATT	2 cut(s)	408, 1039
TfiI	GAWTC	3 cut(s)	554, 562, 896
Tru1I	TTAA	4 cut(s)	89, 756, 1038, 1048
Tru9I	TTAA	4 cut(s)	89, 756, 1038, 1048
TscAI	CASTG	3 cut(s)	313, 602, 1015
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	4 cut(s)	150, 191, 1002, 1034
TspGWI	ACGGA	2 cut(s)	399, 547
TspRI	CASTG	3 cut(s)	313, 602, 1015
XapI	RAATTY	1 cut(s)	408
XceI	RCATGY	1 cut(s)	348
XspI	CTAG	2 cut(s)	144, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.