Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Reverse (-)

1053793 .. 1054998

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1007900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGAAATGGGGTAGCAAAAAGAAAAAGCATCTACCTACTTCTTCAACTTCTTCTTCTTCTTCTGCCTCAAAGGCTTCTTTGATCTCTCATGTCTTTCCAAGTTCATGGCTTTCCAAGTTCAAGCACAAGAGTGAGAGCTCGGAACCAAAACCCGGTGAGGGAAACCGGAAAGGGAAGCAGAATTCTCCGCCTTTAGATTTGCCAAGGTGTGGTAGTCATGGGGGTGGAAGGTTCTATGGCGTAGATGATGACGAGGACGATGCGTTTTGGAGGCTGTCTTTTGGGGAAGATAGTGCTCAAGGGAAGAACGACAGGGGGGTTTTGAGGTCGGTTCGGTACGATTCGGACGATGAGTTTGACGTTCAGAAATCCATTTGTGGAGGGTTTCAAAAGAGCGGTAGAAAGGTGGAGGGAAGAGAAGGGTCTCAGAAGTTGAAGGGCATGCATAAAACTCGGAATGACAGAGACTGGAGAATGAGGAAGGAAAACGGAGAAGTTTTCGGAAAGAAGCGGGTGGAATTGGAAAGAGAAGTGCATAGGAAAGAAGAAGAGATATCAACGGGTTCAGTGCGAAATGATGTACTAGAACTGTTAGCAGCAAGAAAACATCAGGATTTATCCTTGTGGAATTCGAGAAGTTCCGGTCTGGAAACAATTGAGGAAGAATCTTTGAACTTGGAGACTGAAGACGAAGAAGAACTGGTTTCAGATTGGCAAAAACTGAAAGAAAGGAAGACACAAGAGGTGAAGTCGAAGATCGATAAACACAGGAAGTCACTCTACATCAGCAGGGAACTGCAGAGGAGAAGAACGAGGAGGAGTTGCAAAGTCAGAATTTGTTCTCCGCGGACAGCTTCAAGGGTCGAAATCTGCAAAGTGAATGCTCTCGAAGACATGACGAAAGCCAAACTGAAGACAAAAAAGGAGGCTGAGGAGAGAGCGGTGCAGCAGGTACGAACAGGGTTGAACAGTTTTGCAGTGGTGAAGTGCTCATTCGACCCACAGAAGGACTTCCGAGACTCCATGGTTGAGATGGTTGTGGAGAAAAAGATAACCCAGCCGGAGGATCTGGAAGAGCTCTTGGCTTGTTACCTGACCTTGAATTCCGACGAATACCATGATCTCATTATCAAGGTGTTCCGGCAGGTATGGTTTGACTTGAATCAGACCTGTTTCGGTACTGAACTACAGAATGCACAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

402

Amino Acids

46.21

Weight (kDa)

9.04

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	331 - 387	1.4e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	940, 1135
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccBSI	CCGCTC	2 cut(s)	396, 941
AccII	CGCG	1 cut(s)	847
AciI	CCGC	6 cut(s)	188, 396, 511, 845, 847, 941
AclWI	GGATC	1 cut(s)	1074
AcsI	RAATTY	4 cut(s)	181, 628, 834, 1102
AcuI	CTGAAG	2 cut(s)	705, 932
AfaI	GTAC	4 cut(s)	338, 582, 954, 1180
AfiI	CCNNNNNNNGG	5 cut(s)	152, 158, 209, 1006, 1063
AgsI	TTSAA	9 cut(s)	45, 121, 389, 436, 673, 858, 967, 1102, 1162
AleI	CACNNNNGTG	1 cut(s)	129
AluBI	AGCT	3 cut(s)	138, 854, 1078
AluI	AGCT	3 cut(s)	138, 854, 1078
Alw21I	GWGCWC	4 cut(s)	140, 298, 992, 1080
Alw26I	GTCTC	4 cut(s)	429, 459, 674, 1011
AlwI	GGATC	1 cut(s)	1074
AlwNI	CAGNNNCTG	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	596, 946
ApoI	RAATTY	4 cut(s)	181, 628, 834, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	2 cut(s)	838, 1010
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	167, 757, 994
BanII	GRGCYC	2 cut(s)	140, 1080
BarI	GAAGNNNNNNTAC	2 cut(s)	764, 796
BbsI	GAAGAC	4 cut(s)	693, 740, 897, 920
Bbv12I	GWGCWC	4 cut(s)	140, 298, 992, 1080
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	608, 958
BccI	CCATC	1 cut(s)	1027
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 434, 468
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	4 cut(s)	429, 459, 674, 1011
BfaI	CTAG	1 cut(s)	584
BfmI	CTRYAG	2 cut(s)	797, 1187
BfuAI	ACCTGC	2 cut(s)	940, 1135
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	597, 947
BlsI	GCNGC	2 cut(s)	598, 948
Bme1390I	CCNGG	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	37, 250
BpiI	GAAGAC	4 cut(s)	693, 740, 897, 920
BpmI	CTGGAG	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	203, 845, 1023
BsaWI	WCCGGW	2 cut(s)	165, 641
Bsc4I	CCNNNNNNNGG	5 cut(s)	152, 158, 209, 1006, 1063
Bse1I	ACTGG	2 cut(s)	473, 705
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	203, 845, 1023
BseLI	CCNNNNNNNGG	5 cut(s)	152, 158, 209, 1006, 1063
BseMII	CTCAG	2 cut(s)	440, 921
BseNI	ACTGG	2 cut(s)	473, 705
BseRI	GAGGAG	4 cut(s)	817, 829, 832, 947
BseXI	GCAGC	2 cut(s)	608, 958
BseYI	CCCAGC	1 cut(s)	1056
BsgI	GTGCAG	1 cut(s)	965
Bsh1236I	CGCG	1 cut(s)	847
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	4 cut(s)	140, 298, 992, 1080
BsiSI	CCGG	5 cut(s)	153, 166, 642, 1061, 1141
BslI	CCNNNNNNNGG	5 cut(s)	152, 158, 209, 1006, 1063
BsmAI	GTCTC	4 cut(s)	429, 459, 674, 1011
BsmI	GAATGC	2 cut(s)	886, 1198
Bso31I	GGTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	4 cut(s)	140, 298, 992, 1080
Bsp143I	GATC	4 cut(s)	81, 756, 1066, 1120
Bsp19I	CCATGG	1 cut(s)	1023
BspACI	CCGC	6 cut(s)	188, 396, 511, 845, 847, 941
BspCNI	CTCAG	2 cut(s)	439, 922
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	1 cut(s)	847
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	801
BspMI	ACCTGC	2 cut(s)	940, 1135
BspPI	GGATC	1 cut(s)	1074
BspQI	GCTCTTC	1 cut(s)	1068
BspTNI	GGTCTC	1 cut(s)	429
BsrBI	CCGCTC	2 cut(s)	396, 941
BsrI	ACTGG	2 cut(s)	473, 705
BssECI	CCNNGG	3 cut(s)	203, 845, 1023
BssMI	GATC	4 cut(s)	81, 756, 1066, 1120
BssT1I	CCWWGG	2 cut(s)	203, 1023
Bst4CI	ACNGT	2 cut(s)	591, 971
Bst6I	CTCTTC	3 cut(s)	409, 543, 1068
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	426, 930
BstDSI	CCRYGG	2 cut(s)	845, 1023
BstFNI	CGCG	1 cut(s)	847
BstKTI	GATC	4 cut(s)	84, 759, 1069, 1123
BstMAI	GTCTC	4 cut(s)	429, 459, 674, 1011
BstMBI	GATC	4 cut(s)	81, 756, 1066, 1120
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	2 cut(s)	797, 1187
BstUI	CGCG	1 cut(s)	847
BstV1I	GCAGC	2 cut(s)	608, 958
BstV2I	GAAGAC	4 cut(s)	693, 740, 897, 920
BstX2I	RGATCY	1 cut(s)	1066
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	1066
Bsu15I	ATCGAT	1 cut(s)	759
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	2 cut(s)	845, 1023
BtsI	GCAGTG	1 cut(s)	984
BtsIMutI	CAGTG	2 cut(s)	573, 984
BveI	ACCTGC	2 cut(s)	940, 1135
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	468
Cfr42I	CCGCGG	1 cut(s)	848
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	4 cut(s)	337, 581, 953, 1179
CviAII	CATG	7 cut(s)	89, 105, 218, 442, 895, 1024, 1118
CviQI	GTAC	4 cut(s)	337, 581, 953, 1179
DdeI	CTNAG	2 cut(s)	426, 930
DpnI	GATC	4 cut(s)	83, 758, 1068, 1122
DpnII	GATC	4 cut(s)	81, 756, 1066, 1120
Eam1104I	CTCTTC	3 cut(s)	409, 543, 1068
EarI	CTCTTC	3 cut(s)	409, 543, 1068
EciI	GGCGGA	1 cut(s)	177
Ecl136II	GAGCTC	2 cut(s)	138, 1078
Eco130I	CCWWGG	2 cut(s)	203, 1023
Eco24I	GRGCYC	2 cut(s)	140, 1080
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	555
Eco53kI	GAGCTC	2 cut(s)	138, 1078
Eco57I	CTGAAG	2 cut(s)	705, 932
EcoICRI	GAGCTC	2 cut(s)	138, 1078
EcoRI	GAATTC	3 cut(s)	181, 628, 1102
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	203, 1023
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	140, 1080
ErhI	CCWWGG	2 cut(s)	203, 1023
FaeI	CATG	7 cut(s)	92, 108, 221, 445, 898, 1027, 1121
FatI	CATG	7 cut(s)	88, 104, 217, 441, 894, 1023, 1117
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	597, 947
FriOI	GRGCYC	2 cut(s)	140, 1080
Fsp4HI	GCNGC	2 cut(s)	597, 947
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	2 cut(s)	597, 947
GsaI	CCCAGC	1 cut(s)	1060
GsuI	CTGGAG	1 cut(s)	490
HapII	CCGG	5 cut(s)	153, 166, 642, 1061, 1141
Hin1II	CATG	7 cut(s)	92, 108, 221, 445, 898, 1027, 1121
HinfI	GANTC	4 cut(s)	341, 665, 1019, 1162
HpaII	CCGG	5 cut(s)	153, 166, 642, 1061, 1141
HphI	GGTGA	3 cut(s)	167, 757, 994
Hpy188III	TCNNGA	5 cut(s)	611, 633, 647, 887, 1070
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	5 cut(s)	222, 413, 430, 475, 1000
HpyCH4III	ACNGT	2 cut(s)	591, 971
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	8 cut(s)	445, 535, 799, 825, 873, 946, 977, 1196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	426, 930
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	7 cut(s)	92, 108, 221, 445, 898, 1027, 1121
KspI	CCGCGG	1 cut(s)	848
Kzo9I	GATC	4 cut(s)	81, 756, 1066, 1120
LguI	GCTCTTC	1 cut(s)	1068
Lsp1109I	GCAGC	2 cut(s)	608, 958
LweI	GCATC	2 cut(s)	37, 250
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	774, 1088
MalI	GATC	4 cut(s)	83, 758, 1068, 1122
MbiI	CCGCTC	2 cut(s)	396, 941
MboI	GATC	4 cut(s)	81, 756, 1066, 1120
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	1 cut(s)	1066
MhlI	GDGCHC	4 cut(s)	140, 298, 992, 1080
MluCI	AATT	6 cut(s)	181, 518, 628, 654, 834, 1102
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	1 cut(s)	1131
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	2 cut(s)	838, 1010
MslI	CAYNNNNRTG	2 cut(s)	129, 222
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	5 cut(s)	153, 166, 642, 1061, 1141
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	2 cut(s)	886, 1198
MvnI	CGCG	1 cut(s)	847
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	1023
NdeII	GATC	4 cut(s)	81, 756, 1066, 1120
NlaIII	CATG	7 cut(s)	92, 108, 221, 445, 898, 1027, 1121
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	774
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	445
PciSI	GCTCTTC	1 cut(s)	1068
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	2 cut(s)	886, 1198
PdmI	GAANNNNTTC	2 cut(s)	838, 1010
PfeI	GAWTC	3 cut(s)	341, 665, 1162
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	598, 948
PleI	GAGTC	1 cut(s)	1013
PpsI	GAGTC	1 cut(s)	1013
Psp124BI	GAGCTC	2 cut(s)	140, 1080
PspFI	CCCAGC	1 cut(s)	1056
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	801
PstNI	CAGNNNCTG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	1066
RsaI	GTAC	4 cut(s)	338, 582, 954, 1180
RsaNI	GTAC	4 cut(s)	337, 581, 953, 1179
RseI	CAYNNNNRTG	2 cut(s)	129, 222
SacI	GAGCTC	2 cut(s)	140, 1080
SacII	CCGCGG	1 cut(s)	848
SapI	GCTCTTC	1 cut(s)	1068
SatI	GCNGC	2 cut(s)	597, 947
Sau3AI	GATC	4 cut(s)	81, 756, 1066, 1120
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	4 cut(s)	140, 298, 992, 1080
SfaNI	GCATC	2 cut(s)	37, 250
SfcI	CTRYAG	2 cut(s)	797, 1187
Sfr303I	CCGCGG	1 cut(s)	848
SgrBI	CCGCGG	1 cut(s)	848
SmiMI	CAYNNNNRTG	2 cut(s)	129, 222
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	6 cut(s)	181, 518, 628, 654, 834, 1102
SsiI	CCGC	6 cut(s)	188, 396, 511, 845, 847, 941
SspMI	CTAG	1 cut(s)	584
SstI	GAGCTC	2 cut(s)	140, 1080
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	203, 1023
TaaI	ACNGT	2 cut(s)	591, 971
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	6 cut(s)	632, 752, 759, 864, 888, 996
TasI	AATT	6 cut(s)	181, 518, 628, 654, 834, 1102
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	3 cut(s)	341, 665, 1162
TscAI	CASTG	2 cut(s)	573, 984
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	2 cut(s)	596, 946
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	2 cut(s)	17, 93
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	573, 984
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	4 cut(s)	181, 628, 834, 1102
XceI	RCATGY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1030
XmnI	GAANNNNTTC	2 cut(s)	838, 1010
XspI	CTAG	1 cut(s)	584
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.