Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Reverse (-)

4255709 .. 4256881

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAGTGGGGTAGTAGCAGAAACAAAAAGCCTCCACCTTCCTTTTCTGCTTCTTCTTCTACTACTTCTAAGCCATCCTTGATCTCCCATGTCTTTCCAAGTTCATGGCTTTCGAAGTTTAAGCAAAAGACTGGCAATTCAGAGCCAAAACCCGGTAAAGTAAATCAAAAAGGGAAGAGGAATTCTCCGTCTTTGAGTAGTTCACCTAGGATTGCTAGGGAGGGTGGTGGTAGATTCTATGGTGATGATGATGGTGATGATGGATATTGGAGGCTGTCTTTTGGTGAGGACAGTGTTGAAGGAGAGAAGAAGAGTAGAGGTGTGTTACGATCGGTTCGGTATGAATCTGAGGAAGAGTTTGAAGCTAGGCCCTCGAAGGTGACAGGCATGAGTAAAGGTGGGAATGCTGAAGAAAGGAAGTTGAGGAAAGGAAATGAAGGAGTTACAGGGAAGAAGAGGTTAGAATTAAAAGGAGAAGCAGAGGAACCAGAAGAGAGATCAAGCAAAACAGGAGAAGAGGATGATGTGTTGGAAATGTTAGCAGCAAGAATAATTTTGACAAAGGAGAAGGATAGTAACAAGCATGGATTAACTTCTGGTGCAAGGAAATATCGATATGCTTCTTCAAATCTGAAAACAATTGAAGAAGAAGTTTCTGAAGAAAAGCCGACTTCAGATTGGCAGAAGTTGAAGGAAATGAAGATACAAGAGGTGATGGCAAAGAGTGAGAAACACAGGAAATCTGTCTACATAAGCAGAGACTTGCAGAGGAAATCAAGACCAAAGCGGAGTAACAAAGTCAGAGTTTGCTCTCCAAGAACAGCATCAAGAGTTGAAATCTGCAAAATCAAAGCTCTCCAAGACATGGCGAAAGCAAAAAAGGCAGCAAAGGAGAGAAAGGTGCAGCAGGTGAGAACAGGCTTGGATAGCTTTGCAGTGGTGAAGTGCTCATTCGACCCACAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAGAAGCTAACTCGGCCAGATGATCTTGAAGAGCTCTTAGCTTGTTACCTGACACTGAATTCTGATGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTGTGGTTTGATTTGAATCAAACCTATTTTGGTAGTGAATTACAGAATGATCAATGTTGCAATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

391

Amino Acids

44.33

Weight (kDa)

9.33

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	317 - 373	5.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	898, 1093
Acc36I	ACCTGC	2 cut(s)	898, 1093
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccI	GTMKAC	1 cut(s)	747
AciI	CCGC	1 cut(s)	787
AcoI	YGGCCR	1 cut(s)	1016
AcsI	RAATTY	2 cut(s)	181, 1060
AcuI	CTGAAG	4 cut(s)	429, 657, 678, 955
AfiI	CCNNNNNNNGG	3 cut(s)	152, 865, 964
AgsI	TTSAA	8 cut(s)	299, 362, 627, 644, 691, 836, 1031, 1120
AluBI	AGCT	6 cut(s)	365, 854, 930, 1009, 1036, 1043
AluI	AGCT	6 cut(s)	365, 854, 930, 1009, 1036, 1043
Alw21I	GWGCWC	2 cut(s)	950, 1038
Alw26I	GTCTC	1 cut(s)	753
AoxI	GGCC	2 cut(s)	368, 1016
ApeKI	GCWGC	3 cut(s)	542, 884, 904
ApoI	RAATTY	2 cut(s)	181, 1060
AspA2I	CCTAGG	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	8 cut(s)	195, 254, 266, 296, 391, 724, 922, 952
AsuII	TTCGAA	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	950, 1038
BbvI	GCAGC	3 cut(s)	554, 896, 916
BccI	CCATC	4 cut(s)	82, 245, 254, 709
BclI	TGATCA	1 cut(s)	1153
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	753
BfaI	CTAG	3 cut(s)	207, 216, 366
BfuAI	ACCTGC	2 cut(s)	898, 1093
BisI	GCNGC	3 cut(s)	543, 885, 905
BlnI	CCTAGG	1 cut(s)	206
BlsI	GCNGC	3 cut(s)	544, 886, 906
Bme1390I	CCNGG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	833
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu14I	TTCGAA	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	613
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaJI	CCNNGG	2 cut(s)	206, 981
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 865, 964
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	1171
Bse8I	GATNNNNATC	1 cut(s)	1119
BseCI	ATCGAT	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	206, 981
BseGI	GGATG	2 cut(s)	74, 526
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	3 cut(s)	152, 865, 964
BseMI	GCAATG	1 cut(s)	1171
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	554, 896, 916
BsgI	GTGCAG	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	370, 1018
BshVI	ATCGAT	1 cut(s)	613
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	950, 1038
BsiSI	CCGG	2 cut(s)	153, 1099
BslI	CCNNNNNNNGG	3 cut(s)	152, 865, 964
BsmAI	GTCTC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	370, 1018
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	950, 1038
Bsp143I	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	1 cut(s)	787
BspANI	GGCC	2 cut(s)	370, 1018
BspCNI	CTCAG	1 cut(s)	340
BspDI	ATCGAT	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	486
BspMI	ACCTGC	2 cut(s)	898, 1093
BspQI	GCTCTTC	1 cut(s)	1026
BspT104I	TTCGAA	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	1171
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	206, 981
BssMI	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
BssT1I	CCWWGG	2 cut(s)	206, 981
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	7 cut(s)	170, 305, 348, 449, 486, 510, 1026
BstBI	TTCGAA	1 cut(s)	113
BstDEI	CTNAG	3 cut(s)	69, 348, 1039
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	2 cut(s)	74, 526
BstKTI	GATC	6 cut(s)	84, 332, 500, 1027, 1081, 1156
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	3 cut(s)	881, 927, 1015
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	554, 896, 916
BstXI	CCANNNNNNTGG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	370, 1018
BsuTUI	ATCGAT	1 cut(s)	613
BtgI	CCRYGG	1 cut(s)	981
BtsCI	GGATG	2 cut(s)	74, 526
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	3 cut(s)	298, 942, 1055
BveI	ACCTGC	2 cut(s)	898, 1093
Cfr13I	GGNCC	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	613
CviAII	CATG	7 cut(s)	89, 105, 388, 584, 865, 982, 1076
DdeI	CTNAG	3 cut(s)	69, 348, 1039
DpnI	GATC	6 cut(s)	83, 331, 499, 1026, 1080, 1155
DpnII	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
EaeI	YGGCCR	1 cut(s)	1016
Eam1104I	CTCTTC	7 cut(s)	170, 305, 348, 449, 486, 510, 1026
EarI	CTCTTC	7 cut(s)	170, 305, 348, 449, 486, 510, 1026
Ecl136II	GAGCTC	1 cut(s)	1036
Eco130I	CCWWGG	2 cut(s)	206, 981
Eco24I	GRGCYC	1 cut(s)	1038
Eco53kI	GAGCTC	1 cut(s)	1036
Eco57I	CTGAAG	4 cut(s)	429, 657, 678, 955
EcoICRI	GAGCTC	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRI	GAATTC	2 cut(s)	181, 1060
EcoT14I	CCWWGG	2 cut(s)	206, 981
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	2 cut(s)	206, 981
FaeI	CATG	7 cut(s)	92, 108, 391, 587, 868, 985, 1079
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	7 cut(s)	88, 104, 387, 583, 864, 981, 1075
FbaI	TGATCA	1 cut(s)	1153
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	3 cut(s)	543, 885, 905
FokI	GGATG	2 cut(s)	61, 533
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	3 cut(s)	543, 885, 905
FspBI	CTAG	3 cut(s)	207, 216, 366
GluI	GCNGC	3 cut(s)	543, 885, 905
HaeIII	GGCC	2 cut(s)	370, 1018
HapII	CCGG	2 cut(s)	153, 1099
Hin1II	CATG	7 cut(s)	92, 108, 391, 587, 868, 985, 1079
HinfI	GANTC	4 cut(s)	234, 344, 977, 1120
HpaII	CCGG	2 cut(s)	153, 1099
HphI	GGTGA	8 cut(s)	195, 254, 266, 296, 391, 724, 922, 952
Hpy166II	GTNNAC	2 cut(s)	203, 748
Hpy188I	TCNGA	8 cut(s)	142, 349, 633, 658, 676, 803, 974, 1066
Hpy188III	TCNNGA	3 cut(s)	777, 828, 1028
Hpy8I	GTNNAC	2 cut(s)	203, 748
HpyAV	CCTTC	6 cut(s)	48, 293, 370, 431, 562, 685
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	6 cut(s)	602, 766, 843, 904, 935, 1164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	881, 927, 1015
HpyF3I	CTNAG	3 cut(s)	69, 348, 1039
Hsp92II	CATG	7 cut(s)	92, 108, 391, 587, 868, 985, 1079
Ksp22I	TGATCA	1 cut(s)	1153
Kzo9I	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
LguI	GCTCTTC	1 cut(s)	1026
Lsp1109I	GCAGC	3 cut(s)	554, 896, 916
LweI	GCATC	1 cut(s)	833
MaeI	CTAG	3 cut(s)	207, 216, 366
MaeIII	GTNAC	6 cut(s)	324, 379, 442, 575, 791, 1046
MalI	GATC	6 cut(s)	83, 331, 499, 1026, 1080, 1155
MboI	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	2 cut(s)	950, 1038
MluCI	AATT	7 cut(s)	136, 181, 464, 552, 639, 1060, 1142
MmeI	TCCRAC	1 cut(s)	510
MseI	TTAA	3 cut(s)	120, 467, 590
MspI	CCGG	2 cut(s)	153, 1099
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	3 cut(s)	881, 927, 1015
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
NlaIII	CATG	7 cut(s)	92, 108, 391, 587, 868, 985, 1079
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	994
NmuCI	GTSAC	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	113
PaqCI	CACCTGC	2 cut(s)	898, 1093
PciSI	GCTCTTC	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	4 cut(s)	234, 344, 977, 1120
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	3 cut(s)	544, 886, 906
Ple19I	CGATCG	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	1038
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	369
PvuI	CGATCG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	3 cut(s)	120, 467, 590
SatI	GCNGC	3 cut(s)	543, 885, 905
Sau3AI	GATC	6 cut(s)	81, 329, 497, 1024, 1078, 1153
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	2 cut(s)	950, 1038
SfaNI	GCATC	1 cut(s)	833
SfuI	TTCGAA	1 cut(s)	113
Sse9I	AATT	7 cut(s)	136, 181, 464, 552, 639, 1060, 1142
SsiI	CCGC	1 cut(s)	787
SspMI	CTAG	3 cut(s)	207, 216, 366
SstI	GAGCTC	1 cut(s)	1038
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	206, 981
TaaI	ACNGT	1 cut(s)	293
TaqI	TCGA	4 cut(s)	113, 374, 613, 954
TasI	AATT	7 cut(s)	136, 181, 464, 552, 639, 1060, 1142
TfiI	GAWTC	4 cut(s)	234, 344, 977, 1120
Tru1I	TTAA	3 cut(s)	120, 467, 590
Tru9I	TTAA	3 cut(s)	120, 467, 590
TscAI	CASTG	3 cut(s)	298, 942, 1062
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	542, 884, 904
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	6 cut(s)	17, 93, 357, 450, 713, 1083
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	3 cut(s)	298, 942, 1062
Van91I	CCANNNNNTGG	1 cut(s)	865
XapI	RAATTY	2 cut(s)	181, 1060
XmaJI	CCTAGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	747
XspI	CTAG	3 cut(s)	207, 216, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.