Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Reverse (-)

4263905 .. 4264600

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g07200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGTGGGGTAGTAGCAGAAACAAAAAGCCTCCACCTTCCTTTTCAGAGCCAAAACCTGGTAAAGTAAATCGAAAAGGGAAGAGGAATTCTCCGTCTTTGAGTAGTTCACCTAGGATCGCTAGGGAGGGTGGTGGTGGATTCTATGATGATGATGGTGATGATGGATATTGGAGGCTGTCTTTTGGTGAGGACAGTGTTGAAGGAGAGAAGAAGAGTAGAGGTGTGTTACGATCGGTTCGGTATGAATCTGAGGAAGAGTTTGAAGCTAGGCCCTCGAAGGTGACAGGCATGAGTAAAGGTGGGAATGCTAAAGAAAGGAAGTTGAGGAAAGGAAATGAAGGAGTTACAGGGAAGAAGAGGTTAGAATTAAAAGGAGAAGCAGAGGAACCAGAAGAGAGATCAAGCAAAACAGGAGAAGAGGATGATGTGTTGGAAATGTTAGCAGCAAGAATAATTTTGACAAAGGAGAAGGATAGTATTAAGCATGGATTAACTTCTGGTGCAAGGAAATATCGATATGCTTCTTCAAATCTGAAAACAATTGAAGAAGAAGTTTCTGAAGAAAAGCCGACTTCAGATTGGCCGAAGTTGAAGGAAATGAAGATACAAGAGGTGATGGCAAAGAGTGAGAAACACAGGAAATCTGTCTACATAAGCAGACTTGCAGAGGAAATCAAGACCAAAGCGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

232

Amino Acids

26.0

Weight (kDa)

9.35

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	651
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	2 cut(s)	561, 582
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	203, 266, 531, 548, 595
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	272, 584
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	88
AspA2I	CCTAGG	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	5 cut(s)	102, 170, 200, 295, 628
AvrII	CCTAGG	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	149, 158, 613
BciT130I	CCWGG	1 cut(s)	60
BfaI	CTAG	3 cut(s)	114, 123, 270
BisI	GCNGC	1 cut(s)	447
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	76, 108
Bsa29I	ATCGAT	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	274, 586
BshVI	ATCGAT	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	274, 586
Bsp143I	GATC	3 cut(s)	117, 233, 401
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	2 cut(s)	274, 586
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	117, 233, 401
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	6 cut(s)	77, 209, 252, 353, 390, 414
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	3 cut(s)	120, 236, 404
BstMBI	GATC	3 cut(s)	117, 233, 401
BstMCI	CGRYCG	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	274, 586
BsuTUI	ATCGAT	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	273
ClaI	ATCGAT	1 cut(s)	517
CsiI	ACCWGGT	1 cut(s)	58
CviAII	CATG	2 cut(s)	292, 488
CviJI	RGCY	7 cut(s)	31, 52, 178, 269, 274, 571, 586
CviKI_1	RGCY	7 cut(s)	31, 52, 178, 269, 274, 571, 586
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	119, 235, 403
DpnII	GATC	3 cut(s)	117, 233, 401
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	6 cut(s)	77, 209, 252, 353, 390, 414
EarI	CTCTTC	6 cut(s)	77, 209, 252, 353, 390, 414
Eco130I	CCWWGG	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	561, 582
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	295, 491
FaiI	YATR	6 cut(s)	147, 246, 293, 489, 522, 656
FatI	CATG	2 cut(s)	291, 487
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	3 cut(s)	114, 123, 270
GluI	GCNGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	274, 586
Hin1II	CATG	2 cut(s)	295, 491
HinfI	GANTC	2 cut(s)	141, 248
HphI	GGTGA	5 cut(s)	102, 170, 200, 295, 628
Hpy166II	GTNNAC	2 cut(s)	110, 652
Hpy188I	TCNGA	5 cut(s)	49, 253, 537, 562, 580
Hpy188III	TCNNGA	1 cut(s)	679
Hpy8I	GTNNAC	2 cut(s)	110, 652
HpyAV	CCTTC	6 cut(s)	48, 197, 274, 335, 466, 589
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	506, 668
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	295, 491
Kzo9I	GATC	3 cut(s)	117, 233, 401
LpnPI	CCDG	8 cut(s)	45, 72, 273, 336, 399, 405, 486, 625
Lsp1109I	GCAGC	1 cut(s)	458
MabI	ACCWGGT	1 cut(s)	58
MaeI	CTAG	3 cut(s)	114, 123, 270
MaeIII	GTNAC	3 cut(s)	228, 283, 346
MalI	GATC	3 cut(s)	119, 235, 403
MboI	GATC	3 cut(s)	117, 233, 401
MfeI	CAATTG	1 cut(s)	543
MluCI	AATT	4 cut(s)	88, 368, 456, 543
MmeI	TCCRAC	1 cut(s)	414
MseI	TTAA	3 cut(s)	371, 483, 494
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	3 cut(s)	117, 233, 401
NlaIII	CATG	2 cut(s)	295, 491
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	283
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	141, 248
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	448
Ple19I	CGATCG	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	273
PvuI	CGATCG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	371, 483, 494
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	3 cut(s)	117, 233, 401
Sau96I	GGNCC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	9 cut(s)	40, 61, 115, 226, 271, 285, 304, 365, 618
SexAI	ACCWGGT	1 cut(s)	58
Sse9I	AATT	4 cut(s)	88, 368, 456, 543
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	3 cut(s)	114, 123, 270
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	73, 278, 517
TasI	AATT	4 cut(s)	88, 368, 456, 543
TfiI	GAWTC	2 cut(s)	141, 248
Tru1I	TTAA	3 cut(s)	371, 483, 494
Tru9I	TTAA	3 cut(s)	371, 483, 494
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	17, 261, 354, 617
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	202
Van91I	CCANNNNNTGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	3 cut(s)	114, 123, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.