Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

8566322 .. 8567494

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAAGTGGGGTAGTGGTAGCAAAACCAAAAAGCCTCCACCTTCCTTTTCTGCTTCTTCTTCTTCTTCTACTTCTAAGCCTTCTTTGATCTCCCATGTCTTTCCAAGTTCATGGCTTTCGAAGTTCAAGCAAAAGACTGGCAATTCAGAGTCGAAACCCGGTAAAGTAAATCGAAAAGGGAAGCGGAATTCTCCATCTTTGGGTTCACCAAGGATTGCTAGTGGGGGTGGTGGCAGATTCTATGGTGATGATGATGGTGTTGATGGATATTGGAGGCTGTCTTTTGGTGAGGATAGTGTTGAAGGAGAGAAGAAGAGTAGGGGTGCATTACGATCGGTTCGGTATGAATCCGATGAAGAATTTGAAGCTAGGCCCTCGAAGGTGATAGGCATGAGTAAAAGTGGGAATGCCAAAGAGTGGAAGTTGAGGAAAGGAAATAAAGGAGTTTCAGGGAAGAAGGGGTTAGAATTAGAAAGAGAAGCAGAGGAATCAGAAGAGAGATCAAGCAAAACAGGCGAAGAGGATGATGTACTGGAAATGTTAGCAGCAAGAACAATGTTGACAAAGGAGAAGGATAGTAAGCATGGATTGGCTTCTGGTGCAAGGAAATATCATTATGCATCTTCGAATCTCAAAACAATTGAAGAAGAAGGTTCTGAAGAAAAGCCCACTTCAGATTGGCAAAAATTGAAGGTAAGGAAAATACAAGAGGTGATGGAGAAGAGTGAGAAACATAGGAAATCTCTCTACATAAGCAGGGACTTACAGAGGAAACCAAGACCAAAGCGGAGTAACAGAGTCAGAGTTTGCTCTCCAAGAACAGCTTCAAGAGTTGAAATCTGCAAATTCAAAGCTCTCCAAGAGATGGCGAAAGCGAAAAAGGCAGCTAAGGAGAGAAAGGTGCAGCAGGTGAGAACAGGCTTGGATAGCTTTGCAGTGGTGAAGTGCTCATTCGACCCGCAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAAAAGATTACCCGGCCAGACGATCTTGAAGAGCTCTTAGCTTGTTACCTGACACTGAATTCCGATGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTATGGTTTGATTTGAATCAAACCTGTTTTGGTAGTGAACTACAGAATGATCAATGTTGCAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

390

Amino Acids

44.06

Weight (kDa)

9.43

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	317 - 373	1.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	898
Acc36I	ACCTGC	2 cut(s)	898, 1093
AccB7I	CCANNNNNTGG	2 cut(s)	417, 865
AciI	CCGC	3 cut(s)	184, 787, 959
AcoI	YGGCCR	1 cut(s)	1016
AcsI	RAATTY	4 cut(s)	187, 359, 845, 1060
AcuI	CTGAAG	3 cut(s)	657, 678, 955
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	4 cut(s)	200, 417, 865, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	808, 840
AluBI	AGCT	7 cut(s)	368, 824, 854, 887, 930, 1036, 1043
AluI	AGCT	7 cut(s)	368, 824, 854, 887, 930, 1036, 1043
Alw21I	GWGCWC	2 cut(s)	950, 1038
AoxI	GGCC	2 cut(s)	371, 1016
ApeKI	GCWGC	3 cut(s)	545, 884, 904
ApoI	RAATTY	4 cut(s)	187, 359, 845, 1060
Asp700I	GAANNNNTTC	1 cut(s)	823
AspS9I	GGNCC	1 cut(s)	372
AsuC2I	CCSGG	2 cut(s)	159, 1015
AsuHPI	GGTGA	7 cut(s)	198, 257, 299, 394, 724, 922, 952
AsuII	TTCGAA	2 cut(s)	119, 626
BanII	GRGCYC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	950, 1038
BbvI	GCAGC	3 cut(s)	557, 896, 916
BccI	CCATC	5 cut(s)	202, 248, 257, 709, 859
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BclI	TGATCA	1 cut(s)	1153
BcnI	CCSGG	2 cut(s)	159, 1015
BfaI	CTAG	3 cut(s)	219, 369, 1171
BfmI	CTRYAG	1 cut(s)	1145
BfuAI	ACCTGC	2 cut(s)	898, 1093
BisI	GCNGC	3 cut(s)	546, 885, 905
BlsI	GCNGC	3 cut(s)	547, 886, 906
Bme1390I	CCNGG	2 cut(s)	159, 1015
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	159, 1015
BmsI	GCATC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu14I	TTCGAA	2 cut(s)	119, 626
BpuMI	CCSGG	2 cut(s)	159, 1015
BsaBI	GATNNNNATC	1 cut(s)	1119
BsaJI	CCNNGG	2 cut(s)	209, 981
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 417, 865, 964
Bse1I	ACTGG	2 cut(s)	142, 537
Bse3DI	GCAATG	1 cut(s)	1171
Bse8I	GATNNNNATC	1 cut(s)	1119
BseDI	CCNNGG	2 cut(s)	209, 981
BseGI	GGATG	1 cut(s)	529
BseJI	GATNNNNATC	1 cut(s)	1119
BseLI	CCNNNNNNNGG	4 cut(s)	200, 417, 865, 964
BseMI	GCAATG	1 cut(s)	1171
BseNI	ACTGG	2 cut(s)	142, 537
BseXI	GCAGC	3 cut(s)	557, 896, 916
BsgI	GTGCAG	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	373, 1018
BsiEI	CGRYCG	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	950, 1038
BsiSI	CCGG	3 cut(s)	159, 1015, 1099
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	4 cut(s)	200, 417, 865, 964
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	373, 1018
Bsp119I	TTCGAA	2 cut(s)	119, 626
Bsp1286I	GDGCHC	2 cut(s)	950, 1038
Bsp143I	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	3 cut(s)	184, 787, 959
BspANI	GGCC	2 cut(s)	373, 1018
BspMI	ACCTGC	2 cut(s)	898, 1093
BspQI	GCTCTTC	1 cut(s)	1026
BspT104I	TTCGAA	2 cut(s)	119, 626
BsrDI	GCAATG	1 cut(s)	1171
BsrI	ACTGG	2 cut(s)	142, 537
BssECI	CCNNGG	2 cut(s)	209, 981
BssMI	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
BssT1I	CCWWGG	2 cut(s)	209, 981
Bst6I	CTCTTC	5 cut(s)	308, 489, 513, 716, 1026
BstBI	TTCGAA	2 cut(s)	119, 626
BstDEI	CTNAG	3 cut(s)	75, 888, 1039
BstDSI	CCRYGG	1 cut(s)	981
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	6 cut(s)	90, 335, 503, 1027, 1081, 1156
BstMBI	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	4 cut(s)	513, 599, 881, 927
BstSCI	CCNGG	2 cut(s)	157, 1013
BstSFI	CTRYAG	1 cut(s)	1145
BstV1I	GCAGC	3 cut(s)	557, 896, 916
BstXI	CCANNNNNNTGG	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	373, 1018
BtgI	CCRYGG	1 cut(s)	981
BtsCI	GGATG	1 cut(s)	529
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	2 cut(s)	942, 1055
BveI	ACCTGC	2 cut(s)	898, 1093
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	6 cut(s)	95, 111, 391, 584, 982, 1076
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	75, 888, 1039
DpnI	GATC	6 cut(s)	89, 334, 502, 1026, 1080, 1155
DpnII	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
EaeI	YGGCCR	1 cut(s)	1016
Eam1104I	CTCTTC	5 cut(s)	308, 489, 513, 716, 1026
EarI	CTCTTC	5 cut(s)	308, 489, 513, 716, 1026
Ecl136II	GAGCTC	1 cut(s)	1036
Eco130I	CCWWGG	2 cut(s)	209, 981
Eco24I	GRGCYC	1 cut(s)	1038
Eco53kI	GAGCTC	1 cut(s)	1036
Eco57I	CTGAAG	3 cut(s)	657, 678, 955
EcoICRI	GAGCTC	1 cut(s)	1036
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	2 cut(s)	187, 1060
EcoT14I	CCWWGG	2 cut(s)	209, 981
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	1 cut(s)	1038
ErhI	CCWWGG	2 cut(s)	209, 981
FaeI	CATG	6 cut(s)	98, 114, 394, 587, 985, 1079
FalI	AAGNNNNNCTT	2 cut(s)	808, 840
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	6 cut(s)	94, 110, 390, 583, 981, 1075
FauI	CCCGC	1 cut(s)	966
FbaI	TGATCA	1 cut(s)	1153
Fnu4HI	GCNGC	3 cut(s)	546, 885, 905
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	1038
Fsp4HI	GCNGC	3 cut(s)	546, 885, 905
FspBI	CTAG	3 cut(s)	219, 369, 1171
GluI	GCNGC	3 cut(s)	546, 885, 905
HaeIII	GGCC	2 cut(s)	373, 1018
HapII	CCGG	3 cut(s)	159, 1015, 1099
Hin1II	CATG	6 cut(s)	98, 114, 394, 587, 985, 1079
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	8 cut(s)	149, 237, 347, 488, 628, 798, 977, 1120
HpaII	CCGG	3 cut(s)	159, 1015, 1099
HphI	GGTGA	7 cut(s)	198, 257, 299, 394, 724, 922, 952
Hpy166II	GTNNAC	3 cut(s)	206, 561, 1142
Hpy188I	TCNGA	8 cut(s)	148, 352, 493, 658, 676, 803, 974, 1066
Hpy188III	TCNNGA	2 cut(s)	828, 1028
Hpy8I	GTNNAC	3 cut(s)	206, 561, 1142
HpyAV	CCTTC	8 cut(s)	51, 90, 296, 373, 451, 565, 644, 685
HpyCH4V	TGCA	7 cut(s)	326, 602, 620, 843, 904, 935, 1164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	513, 599, 881, 927
HpyF3I	CTNAG	3 cut(s)	75, 888, 1039
Hsp92II	CATG	6 cut(s)	98, 114, 394, 587, 985, 1079
Ksp22I	TGATCA	1 cut(s)	1153
Kzo9I	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
LguI	GCTCTTC	1 cut(s)	1026
Lsp1109I	GCAGC	3 cut(s)	557, 896, 916
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	3 cut(s)	219, 369, 1171
MaeIII	GTNAC	2 cut(s)	791, 1046
MalI	GATC	6 cut(s)	89, 334, 502, 1026, 1080, 1155
MboI	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
MfeI	CAATTG	1 cut(s)	639
MhlI	GDGCHC	2 cut(s)	950, 1038
MluCI	AATT	8 cut(s)	142, 187, 359, 467, 639, 686, 845, 1060
MlyI	GAGTC	2 cut(s)	158, 807
MnlI	CCTC	9 cut(s)	45, 267, 283, 385, 420, 478, 514, 703, 762
Mph1103I	ATGCAT	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	823
MspI	CCGG	3 cut(s)	159, 1015, 1099
MspR9I	CCNGG	2 cut(s)	159, 1015
MunI	CAATTG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	4 cut(s)	513, 599, 881, 927
NciI	CCSGG	2 cut(s)	159, 1015
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
NlaIII	CATG	6 cut(s)	98, 114, 394, 587, 985, 1079
NsiI	ATGCAT	1 cut(s)	622
NspV	TTCGAA	2 cut(s)	119, 626
PaqCI	CACCTGC	1 cut(s)	898
PciSI	GCTCTTC	1 cut(s)	1026
PctI	GAATGC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	823
PfeI	GAWTC	6 cut(s)	237, 347, 488, 628, 977, 1120
PflMI	CCANNNNNTGG	2 cut(s)	417, 865
PkrI	GCNGC	3 cut(s)	547, 886, 906
Ple19I	CGATCG	1 cut(s)	335
PleI	GAGTC	2 cut(s)	157, 806
PpsI	GAGTC	2 cut(s)	157, 806
Psp124BI	GAGCTC	1 cut(s)	1038
PspPI	GGNCC	1 cut(s)	372
PvuI	CGATCG	1 cut(s)	335
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	1038
SapI	GCTCTTC	1 cut(s)	1026
SatI	GCNGC	3 cut(s)	546, 885, 905
Sau3AI	GATC	6 cut(s)	87, 332, 500, 1024, 1078, 1153
Sau96I	GGNCC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	158, 807
ScrFI	CCNGG	2 cut(s)	159, 1015
SduI	GDGCHC	2 cut(s)	950, 1038
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	1 cut(s)	1145
SfuI	TTCGAA	2 cut(s)	119, 626
Sse9I	AATT	8 cut(s)	142, 187, 359, 467, 639, 686, 845, 1060
SsiI	CCGC	3 cut(s)	184, 787, 959
SspMI	CTAG	3 cut(s)	219, 369, 1171
SstI	GAGCTC	1 cut(s)	1038
StyD4I	CCNGG	2 cut(s)	157, 1013
StyI	CCWWGG	2 cut(s)	209, 981
TaqI	TCGA	6 cut(s)	119, 152, 172, 377, 626, 954
TasI	AATT	8 cut(s)	142, 187, 359, 467, 639, 686, 845, 1060
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	6 cut(s)	237, 347, 488, 628, 977, 1120
TscAI	CASTG	2 cut(s)	942, 1062
TseI	GCWGC	3 cut(s)	545, 884, 904
TspDTI	ATGAA	5 cut(s)	17, 99, 360, 369, 1083
TspRI	CASTG	2 cut(s)	942, 1062
Van91I	CCANNNNNTGG	2 cut(s)	417, 865
XapI	RAATTY	4 cut(s)	187, 359, 845, 1060
XmnI	GAANNNNTTC	1 cut(s)	823
XspI	CTAG	3 cut(s)	219, 369, 1171
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.