Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

3304642 .. 3306318

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAGTGGGGTAGCAAAAAGAAAAGGCCTCCACCTATTTCCTCTTCATCATCTTCTTCTTCTCAGCCTTTCTTGATTTCTCATGTCTTTCCCACTTCATGGCTTTCAAAGTTCAAGCAGAAGGGGGGCAATTCAGAACCAAAACCCAGTAAAGTAAATAGAAAAGGGAAGCAGAATTCTCCATCTTTGGGTTCACCAAGGTTTGCTGCTGCTAAGGGTGGTGGAAGATTCTATGGTGTAGTTGATGATGATGATGATGCATTTTGGAGACTATCTTTTGGTGAAGATAGTGCTGAAGTGAAGAAAAACAGAGGGGTTTTGAGATCGGTTTGGTTTGATTCAGATGATGAGTTTGAAGTTCAGCCCTCCAGTCGTGGAAGCTGTCAAACAAGTGATAGAATAGTGAAGGGAAGAGATTTGTCTCAGAAGTTGAAGGGCATGCAGAAAAGTGGGAATGCTAAAGAGTGGAAATTGAGGAAGGAAAACAGAGAACTTGAAGGAAAGAAGTTGTTGAAATTAGAAAGAGATGCTGATAAAGCAGAAGAGACATCAACAGAAACAGTAGAAAGTGATGAGGTGGAAATGTTAGCGGCAAGAAAATTTTGGGCAACTGAGACTGATGCAAGAAAACATCAGTATGTATCTTCACTGAATTCAAGAAATTCAAGTCTAAAAACGATTCAAGAAGAAGCTTTGAACTTGGAGACTGAAGAGCCTTCTGAAGAAAAACAGCCTTCAGATTGGCAAAAATTGAAAGAACGGAAAATACAAGAGGTGAAGTCAAAGAGTGAGAAACATAGGAAATCTCTCTACATAAGCAGGGAATTACAGAGGAGAAGAACAAAACGTAGTAGCAAAGTCAGAGTTTGTTCTCCAAGAACAGCTTCAAGGGTTGAAATCTGTAAAATTAAAGCTCTTGAAAACATGACGAAAGCGAAAATGAAGATGAAAAGGGTGGCTAAGGAGGGAGCAGTGCAGCAGGTAAGAACAGGCTTGAATAGCTTTGCAGTGGTAAAGTGCTCATTTGACCCACAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAAAAGATAACCCAGCCAGAGGATCTGGAAGAGCTCTTAGCTTGTTATCTGACCCTGAATTCTGATGAATACCATGATCTCATTGTCAAGGTATTCCGGCAGGTATGGTTCGACTTGAATCAGGCCAGTTTCAGTACTGAATTACAGAACGAACAATGTAGCAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

415

Amino Acids

47.41

Weight (kDa)

9.39

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	970, 1165
AccB7I	CCANNNNNTGG	1 cut(s)	99
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	1 cut(s)	1104
AcsI	RAATTY	5 cut(s)	175, 599, 652, 661, 1132
AcuI	CTGAAG	5 cut(s)	315, 720, 729, 741, 1027
AfaI	GTAC	1 cut(s)	1210
AfiI	CCNNNNNNNGG	4 cut(s)	99, 188, 1036, 1093
AjuI	GAANNNNNNNTTGG	2 cut(s)	868, 900
AluBI	AGCT	7 cut(s)	381, 692, 884, 914, 1002, 1108, 1115
AluI	AGCT	7 cut(s)	381, 692, 884, 914, 1002, 1108, 1115
Alw21I	GWGCWC	2 cut(s)	1022, 1110
Alw26I	GTCTC	5 cut(s)	262, 426, 539, 608, 698
AlwI	GGATC	1 cut(s)	1104
AlwNI	CAGNNNCTG	1 cut(s)	1242
AoxI	GGCC	2 cut(s)	26, 1197
ApeKI	GCWGC	3 cut(s)	206, 209, 976
ApoI	RAATTY	5 cut(s)	175, 599, 652, 661, 1132
Asp700I	GAANNNNTTC	1 cut(s)	883
AsuHPI	GGTGA	3 cut(s)	186, 293, 787
BanII	GRGCYC	1 cut(s)	1110
Bbv12I	GWGCWC	2 cut(s)	1022, 1110
BbvI	GCAGC	3 cut(s)	193, 196, 988
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	5 cut(s)	262, 426, 539, 608, 698
BfuAI	ACCTGC	2 cut(s)	970, 1165
BisI	GCNGC	4 cut(s)	207, 210, 591, 977
BlsI	GCNGC	4 cut(s)	208, 211, 592, 978
BmcAI	AGTACT	1 cut(s)	1210
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	247, 517, 610
BmuI	ACTGGG	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	352
Bpu10I	CCTNAGC	2 cut(s)	213, 960
BsaJI	CCNNGG	2 cut(s)	197, 1053
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 188, 1036, 1093
Bse1I	ACTGG	3 cut(s)	147, 369, 1200
BseDI	CCNNGG	2 cut(s)	197, 1053
BseLI	CCNNNNNNNGG	4 cut(s)	99, 188, 1036, 1093
BseMII	CTCAG	3 cut(s)	77, 437, 603
BseNI	ACTGG	3 cut(s)	147, 369, 1200
BseRI	GAGGAG	1 cut(s)	847
BseXI	GCAGC	3 cut(s)	193, 196, 988
BseYI	CCCAGC	1 cut(s)	1086
BsgI	GTGCAG	1 cut(s)	995
BshFI	GGCC	2 cut(s)	28, 1199
BsiHKAI	GWGCWC	2 cut(s)	1022, 1110
BsiSI	CCGG	1 cut(s)	1171
BslI	CCNNNNNNNGG	4 cut(s)	99, 188, 1036, 1093
BsmAI	GTCTC	5 cut(s)	262, 426, 539, 608, 698
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	28, 1199
Bsp1286I	GDGCHC	2 cut(s)	1022, 1110
Bsp143I	GATC	3 cut(s)	323, 1096, 1150
Bsp19I	CCATGG	1 cut(s)	1053
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	2 cut(s)	28, 1199
BspCNI	CTCAG	3 cut(s)	76, 436, 604
BspMI	ACCTGC	2 cut(s)	970, 1165
BspPI	GGATC	1 cut(s)	1104
BspQI	GCTCTTC	2 cut(s)	705, 1098
BsrI	ACTGG	3 cut(s)	147, 369, 1200
BssECI	CCNNGG	2 cut(s)	197, 1053
BssMI	GATC	3 cut(s)	323, 1096, 1150
BssT1I	CCWWGG	2 cut(s)	197, 1053
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	5 cut(s)	49, 406, 537, 705, 1098
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	6 cut(s)	63, 213, 423, 612, 960, 1111
BstDSI	CCRYGG	1 cut(s)	1053
BstKTI	GATC	3 cut(s)	326, 1099, 1153
BstMAI	GTCTC	5 cut(s)	262, 426, 539, 608, 698
BstMBI	GATC	3 cut(s)	323, 1096, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 999
BstNSI	RCATGY	1 cut(s)	442
BstV1I	GCAGC	3 cut(s)	193, 196, 988
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
BsuRI	GGCC	2 cut(s)	28, 1199
BtgI	CCRYGG	1 cut(s)	1053
BtsI	GCAGTG	3 cut(s)	978, 1014, 1243
BtsIMutI	CAGTG	4 cut(s)	647, 978, 1014, 1243
BveI	ACCTGC	2 cut(s)	970, 1165
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	1242
Csp6I	GTAC	1 cut(s)	1209
CviAII	CATG	6 cut(s)	83, 99, 439, 925, 1054, 1148
CviQI	GTAC	1 cut(s)	1209
DdeI	CTNAG	6 cut(s)	63, 213, 423, 612, 960, 1111
DpnI	GATC	3 cut(s)	325, 1098, 1152
DpnII	GATC	3 cut(s)	323, 1096, 1150
Eam1104I	CTCTTC	5 cut(s)	49, 406, 537, 705, 1098
EarI	CTCTTC	5 cut(s)	49, 406, 537, 705, 1098
Ecl136II	GAGCTC	1 cut(s)	1108
Eco130I	CCWWGG	2 cut(s)	197, 1053
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	1110
Eco53kI	GAGCTC	1 cut(s)	1108
Eco57I	CTGAAG	5 cut(s)	315, 720, 729, 741, 1027
EcoICRI	GAGCTC	1 cut(s)	1108
EcoRI	GAATTC	3 cut(s)	175, 652, 1132
EcoT14I	CCWWGG	2 cut(s)	197, 1053
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	1110
ErhI	CCWWGG	2 cut(s)	197, 1053
FaeI	CATG	6 cut(s)	86, 102, 442, 928, 1057, 1151
FalI	AAGNNNNNCTT	2 cut(s)	868, 900
FatI	CATG	6 cut(s)	82, 98, 438, 924, 1053, 1147
Fnu4HI	GCNGC	4 cut(s)	207, 210, 591, 977
FriOI	GRGCYC	1 cut(s)	1110
Fsp4HI	GCNGC	4 cut(s)	207, 210, 591, 977
GluI	GCNGC	4 cut(s)	207, 210, 591, 977
GsaI	CCCAGC	1 cut(s)	1090
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	28, 1199
HapII	CCGG	1 cut(s)	1171
Hin1II	CATG	6 cut(s)	86, 102, 442, 928, 1057, 1151
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	5 cut(s)	228, 338, 679, 1049, 1192
HpaII	CCGG	1 cut(s)	1171
HphI	GGTGA	3 cut(s)	186, 293, 787
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	9 cut(s)	136, 343, 426, 721, 739, 863, 1046, 1125, 1138
Hpy188III	TCNNGA	5 cut(s)	73, 657, 683, 917, 1100
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	7 cut(s)	115, 400, 427, 472, 491, 726, 744
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	847
HpyCH4V	TGCA	5 cut(s)	260, 442, 623, 976, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 999
HpyF3I	CTNAG	6 cut(s)	63, 213, 423, 612, 960, 1111
HpySE526I	ACGT	1 cut(s)	847
Hsp92II	CATG	6 cut(s)	86, 102, 442, 928, 1057, 1151
Kzo9I	GATC	3 cut(s)	323, 1096, 1150
LguI	GCTCTTC	2 cut(s)	705, 1098
LmnI	GCTCC	1 cut(s)	968
Lsp1109I	GCAGC	3 cut(s)	193, 196, 988
LweI	GCATC	3 cut(s)	247, 517, 610
MaeII	ACGT	1 cut(s)	847
MaeIII	GTNAC	1 cut(s)	1238
MalI	GATC	3 cut(s)	325, 1098, 1152
MboI	GATC	3 cut(s)	323, 1096, 1150
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	2 cut(s)	1022, 1110
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	883
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	1 cut(s)	636
MspI	CCGG	1 cut(s)	1171
Mva1269I	GAATGC	1 cut(s)	460
MwoI	GCNNNNNNNGC	2 cut(s)	536, 999
NcoI	CCATGG	1 cut(s)	1053
NdeII	GATC	3 cut(s)	323, 1096, 1150
NlaIII	CATG	6 cut(s)	86, 102, 442, 928, 1057, 1151
NmuCI	GTSAC	1 cut(s)	1238
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	442
PaeI	GCATGC	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	2 cut(s)	705, 1098
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	5 cut(s)	228, 338, 679, 1049, 1192
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	208, 211, 592, 978
Psp124BI	GAGCTC	1 cut(s)	1110
PspFI	CCCAGC	1 cut(s)	1086
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PstNI	CAGNNNCTG	1 cut(s)	1242
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	1 cut(s)	1210
RsaNI	GTAC	1 cut(s)	1209
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	1110
SapI	GCTCTTC	2 cut(s)	705, 1098
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	4 cut(s)	207, 210, 591, 977
Sau3AI	GATC	3 cut(s)	323, 1096, 1150
ScaI	AGTACT	1 cut(s)	1210
SduI	GDGCHC	2 cut(s)	1022, 1110
SfaNI	GCATC	3 cut(s)	247, 517, 610
SmiMI	CAYNNNNRTG	1 cut(s)	636
SphI	GCATGC	1 cut(s)	442
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	1 cut(s)	590
SstI	GAGCTC	1 cut(s)	1110
StuI	AGGCCT	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	197, 1053
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	850
TaqI	TCGA	1 cut(s)	1185
TatI	WGTACW	1 cut(s)	1208
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	5 cut(s)	228, 338, 679, 1049, 1192
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	4 cut(s)	654, 978, 1014, 1243
TseFI	GTSAC	1 cut(s)	1238
TseI	GCWGC	3 cut(s)	206, 209, 976
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	6 cut(s)	17, 36, 87, 956, 962, 1155
TspGWI	ACGGA	1 cut(s)	775
TspRI	CASTG	4 cut(s)	654, 978, 1014, 1243
Van91I	CCANNNNNTGG	1 cut(s)	99
XapI	RAATTY	5 cut(s)	175, 599, 652, 661, 1132
XceI	RCATGY	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	883
ZrmI	AGTACT	1 cut(s)	1210
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.