Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

7974795 .. 7976078

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29256

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAAGTGGGGTAGTGGTAGCAAAACCAAAAAGCCTCCACCTTCCTTTTCTGCTTCTTCTTCTACTTCTAAGCCTTCTTTGATCTCCCATGTCTTTCCAAGTTCATGGCTTTCGAAGTTCAAGCAAAAGACTGGCAATTCAGAGTCAAAACCCGGTAAAGTAAATCGAAAAGGGAAGCGGAATTCTCCATCTTTGGGTTCACCAAGGATTGCCAGTGGGGGTGGTGGCAGATTCTATGGTGATGATGATGGTGTTGATGGATATTGGAGGCTGTCTTTTGGTGAGGATAGTGTTGAAGGAGAGAAGAAGAGTAGGGGTGCATTACGATCGGTTCGGTATGAATCCGATGAAGAATTTGAAGCTAAGCCCTCGAAGGTGATAGGCATGAGTAAAAGTGGGAATGCTAGAGAGTGGAAGTTGAGGAAAGGAAATAAAGGAGTTTCAGGGAAGAAGGGGTTAGAATTAGAAAGAGAAGCAGAGGAATCAGAAGAGAGATCAAGCAAAACAGGCGAAGAGGATGATGTACTGGAAATGTTAGCAGCAAGAACAATGTTGACAAAGGAGAAGGATAGTAAGCATGGATTGGCTTCTGGTGCAAGGAAATATCATTATGCATCTTCGAATCTCAAAACAATTGAAGAAGAAGGTTCTGAAGAAAAGCCCACTTCAGATTGGCAAAAATTGAAGGAAAGGAAAATACAAGAGGTGATGGAAAAGAGTGAGAAACATAGGAAATCTCTCTACATAAGCAGGGACTTACAGAGGAAACCAAGACCAAAGCGGAGTAACAGAGTCAGAGTTTGCTCTCCAAGAACAGCTTCAAGAGTTGAAATCTGCAAATTCAAAGCTCTCCAAGAGATGGCGAAAGCGAAAAAGGCAGCTAAGGAGAGAAAGGTGCAGCAGGTGAGAACAGGCTTGGATAGCTTTGCAGTGGTGAAGTGCTCATTCGACCCGCAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAAAAGATTACCCGGCCAGACGATCTTGAAGAGCTCTTAGCTTGTTACCTGACACTGAATTCCGATGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTATGGTTTGATTTGAATCAAACCTGTTTTGGTAGTGAACTACAGAATGATCAATGTTGCAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

388

Amino Acids

43.92

Weight (kDa)

9.39

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	315 - 371	1.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	892
Acc36I	ACCTGC	2 cut(s)	892, 1087
AccB7I	CCANNNNNTGG	1 cut(s)	859
AciI	CCGC	3 cut(s)	178, 781, 953
AcoI	YGGCCR	1 cut(s)	1010
AcsI	RAATTY	4 cut(s)	181, 353, 839, 1054
AcuI	CTGAAG	3 cut(s)	651, 672, 949
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	3 cut(s)	194, 859, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	802, 834
AluBI	AGCT	7 cut(s)	362, 818, 848, 881, 924, 1030, 1037
AluI	AGCT	7 cut(s)	362, 818, 848, 881, 924, 1030, 1037
Alw21I	GWGCWC	2 cut(s)	944, 1032
AoxI	GGCC	1 cut(s)	1010
ApeKI	GCWGC	3 cut(s)	539, 878, 898
ApoI	RAATTY	4 cut(s)	181, 353, 839, 1054
Asp700I	GAANNNNTTC	1 cut(s)	817
AsuC2I	CCSGG	2 cut(s)	153, 1009
AsuHPI	GGTGA	7 cut(s)	192, 251, 293, 388, 718, 916, 946
AsuII	TTCGAA	2 cut(s)	113, 620
BanII	GRGCYC	1 cut(s)	1032
Bbv12I	GWGCWC	2 cut(s)	944, 1032
BbvI	GCAGC	3 cut(s)	551, 890, 910
BccI	CCATC	5 cut(s)	196, 242, 251, 703, 853
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BclI	TGATCA	1 cut(s)	1147
BcnI	CCSGG	2 cut(s)	153, 1009
BfaI	CTAG	2 cut(s)	405, 1165
BfmI	CTRYAG	1 cut(s)	1139
BfuAI	ACCTGC	2 cut(s)	892, 1087
BisI	GCNGC	3 cut(s)	540, 879, 899
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	3 cut(s)	541, 880, 900
Bme1390I	CCNGG	2 cut(s)	153, 1009
BmrFI	CCNGG	2 cut(s)	153, 1009
BmsI	GCATC	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	882
Bpu1102I	GCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	2 cut(s)	113, 620
BpuMI	CCSGG	2 cut(s)	153, 1009
BsaBI	GATNNNNATC	1 cut(s)	1113
BsaJI	CCNNGG	2 cut(s)	203, 975
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 859, 958
Bse1I	ACTGG	3 cut(s)	136, 213, 531
Bse3DI	GCAATG	1 cut(s)	1165
Bse8I	GATNNNNATC	1 cut(s)	1113
BseDI	CCNNGG	2 cut(s)	203, 975
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	1113
BseLI	CCNNNNNNNGG	3 cut(s)	194, 859, 958
BseMI	GCAATG	1 cut(s)	1165
BseNI	ACTGG	3 cut(s)	136, 213, 531
BseXI	GCAGC	3 cut(s)	551, 890, 910
BsgI	GTGCAG	1 cut(s)	917
Bsh1285I	CGRYCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	1012
BsiEI	CGRYCG	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	944, 1032
BsiSI	CCGG	3 cut(s)	153, 1009, 1093
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	194, 859, 958
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	1012
Bsp119I	TTCGAA	2 cut(s)	113, 620
Bsp1286I	GDGCHC	2 cut(s)	944, 1032
Bsp143I	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
Bsp1720I	GCTNAGC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	975
BspACI	CCGC	3 cut(s)	178, 781, 953
BspANI	GGCC	1 cut(s)	1012
BspMI	ACCTGC	2 cut(s)	892, 1087
BspQI	GCTCTTC	1 cut(s)	1020
BspT104I	TTCGAA	2 cut(s)	113, 620
BsrDI	GCAATG	1 cut(s)	1165
BsrI	ACTGG	3 cut(s)	136, 213, 531
BssECI	CCNNGG	2 cut(s)	203, 975
BssMI	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
BssT1I	CCWWGG	2 cut(s)	203, 975
Bst6I	CTCTTC	4 cut(s)	302, 483, 507, 1020
BstBI	TTCGAA	2 cut(s)	113, 620
BstDEI	CTNAG	4 cut(s)	69, 363, 882, 1033
BstDSI	CCRYGG	1 cut(s)	975
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	6 cut(s)	84, 329, 497, 1021, 1075, 1150
BstMBI	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
BstMCI	CGRYCG	1 cut(s)	329
BstMWI	GCNNNNNNNGC	4 cut(s)	507, 593, 875, 921
BstSCI	CCNGG	2 cut(s)	151, 1007
BstSFI	CTRYAG	1 cut(s)	1139
BstV1I	GCAGC	3 cut(s)	551, 890, 910
BstXI	CCANNNNNNTGG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	1012
BtgI	CCRYGG	1 cut(s)	975
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	3 cut(s)	220, 936, 1049
BveI	ACCTGC	2 cut(s)	892, 1087
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	6 cut(s)	89, 105, 385, 578, 976, 1070
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	4 cut(s)	69, 363, 882, 1033
DpnI	GATC	6 cut(s)	83, 328, 496, 1020, 1074, 1149
DpnII	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
EaeI	YGGCCR	1 cut(s)	1010
Eam1104I	CTCTTC	4 cut(s)	302, 483, 507, 1020
EarI	CTCTTC	4 cut(s)	302, 483, 507, 1020
Ecl136II	GAGCTC	1 cut(s)	1030
Eco130I	CCWWGG	2 cut(s)	203, 975
Eco24I	GRGCYC	1 cut(s)	1032
Eco53kI	GAGCTC	1 cut(s)	1030
Eco57I	CTGAAG	3 cut(s)	651, 672, 949
EcoICRI	GAGCTC	1 cut(s)	1030
EcoRI	GAATTC	2 cut(s)	181, 1054
EcoT14I	CCWWGG	2 cut(s)	203, 975
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	2 cut(s)	203, 975
FaeI	CATG	6 cut(s)	92, 108, 388, 581, 979, 1073
FalI	AAGNNNNNCTT	2 cut(s)	802, 834
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	6 cut(s)	88, 104, 384, 577, 975, 1069
FauI	CCCGC	1 cut(s)	960
FbaI	TGATCA	1 cut(s)	1147
Fnu4HI	GCNGC	3 cut(s)	540, 879, 899
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	3 cut(s)	540, 879, 899
FspBI	CTAG	2 cut(s)	405, 1165
GluI	GCNGC	3 cut(s)	540, 879, 899
HaeIII	GGCC	1 cut(s)	1012
HapII	CCGG	3 cut(s)	153, 1009, 1093
Hin1II	CATG	6 cut(s)	92, 108, 388, 581, 979, 1073
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HinfI	GANTC	8 cut(s)	143, 231, 341, 482, 622, 792, 971, 1114
HpaII	CCGG	3 cut(s)	153, 1009, 1093
HphI	GGTGA	7 cut(s)	192, 251, 293, 388, 718, 916, 946
Hpy166II	GTNNAC	3 cut(s)	200, 555, 1136
Hpy188I	TCNGA	8 cut(s)	142, 346, 487, 652, 670, 797, 968, 1060
Hpy188III	TCNNGA	2 cut(s)	822, 1022
Hpy8I	GTNNAC	3 cut(s)	200, 555, 1136
HpyAV	CCTTC	8 cut(s)	51, 84, 290, 367, 445, 559, 638, 679
HpyCH4V	TGCA	7 cut(s)	320, 596, 614, 837, 898, 929, 1158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	507, 593, 875, 921
HpyF3I	CTNAG	4 cut(s)	69, 363, 882, 1033
Hsp92II	CATG	6 cut(s)	92, 108, 388, 581, 979, 1073
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
LguI	GCTCTTC	1 cut(s)	1020
Lsp1109I	GCAGC	3 cut(s)	551, 890, 910
LweI	GCATC	1 cut(s)	623
MaeI	CTAG	2 cut(s)	405, 1165
MaeIII	GTNAC	2 cut(s)	785, 1040
MalI	GATC	6 cut(s)	83, 328, 496, 1020, 1074, 1149
MboI	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	2 cut(s)	944, 1032
MluCI	AATT	8 cut(s)	136, 181, 353, 461, 633, 680, 839, 1054
MlyI	GAGTC	2 cut(s)	152, 801
MnlI	CCTC	9 cut(s)	45, 261, 277, 379, 414, 472, 508, 697, 756
Mph1103I	ATGCAT	1 cut(s)	616
MroXI	GAANNNNTTC	1 cut(s)	817
MspI	CCGG	3 cut(s)	153, 1009, 1093
MspR9I	CCNGG	2 cut(s)	153, 1009
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	4 cut(s)	507, 593, 875, 921
NciI	CCSGG	2 cut(s)	153, 1009
NcoI	CCATGG	1 cut(s)	975
NdeII	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
NlaIII	CATG	6 cut(s)	92, 108, 388, 581, 979, 1073
NsiI	ATGCAT	1 cut(s)	616
NspV	TTCGAA	2 cut(s)	113, 620
PaqCI	CACCTGC	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	1020
PctI	GAATGC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	817
PfeI	GAWTC	6 cut(s)	231, 341, 482, 622, 971, 1114
PflMI	CCANNNNNTGG	1 cut(s)	859
PkrI	GCNGC	3 cut(s)	541, 880, 900
Ple19I	CGATCG	1 cut(s)	329
PleI	GAGTC	2 cut(s)	151, 800
PpsI	GAGTC	2 cut(s)	151, 800
Psp124BI	GAGCTC	1 cut(s)	1032
PvuI	CGATCG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	1032
SapI	GCTCTTC	1 cut(s)	1020
SatI	GCNGC	3 cut(s)	540, 879, 899
Sau3AI	GATC	6 cut(s)	81, 326, 494, 1018, 1072, 1147
SchI	GAGTC	2 cut(s)	152, 801
ScrFI	CCNGG	2 cut(s)	153, 1009
SduI	GDGCHC	2 cut(s)	944, 1032
SfaNI	GCATC	1 cut(s)	623
SfcI	CTRYAG	1 cut(s)	1139
SfuI	TTCGAA	2 cut(s)	113, 620
Sse9I	AATT	8 cut(s)	136, 181, 353, 461, 633, 680, 839, 1054
SsiI	CCGC	3 cut(s)	178, 781, 953
SspMI	CTAG	2 cut(s)	405, 1165
SstI	GAGCTC	1 cut(s)	1032
StyD4I	CCNGG	2 cut(s)	151, 1007
StyI	CCWWGG	2 cut(s)	203, 975
TaqI	TCGA	5 cut(s)	113, 166, 371, 620, 948
TasI	AATT	8 cut(s)	136, 181, 353, 461, 633, 680, 839, 1054
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	6 cut(s)	231, 341, 482, 622, 971, 1114
TscAI	CASTG	3 cut(s)	220, 936, 1056
TseI	GCWGC	3 cut(s)	539, 878, 898
TspDTI	ATGAA	5 cut(s)	17, 93, 354, 363, 1077
TspRI	CASTG	3 cut(s)	220, 936, 1056
Van91I	CCANNNNNTGG	1 cut(s)	859
XapI	RAATTY	4 cut(s)	181, 353, 839, 1054
XmnI	GAANNNNTTC	1 cut(s)	817
XspI	CTAG	2 cut(s)	405, 1165
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.