Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Reverse (-)

36598662 .. 36599852

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1274500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAGTGGGGTACCAAAAAGCAAAAGAATCCACCTACTTCTTCTTCTTCTTCTTCTTCAAAGCCTTCTCTGATCTCTCGTGTCTTTCCAAGTTCATGGCTTTCCAAGTTCAAGCACAAGAGTGGGAATTCGGAACCGAAACCCAGGAAGGGAAACCGGAAAGGGAAGCAGAATTCTCCGCCTTTGGATTTGCCAAGGTGTGGTAGTCATGGTGGTGGGAGGTTTCATGGCGTGGATGATGACGAGGATGATGCGTTTTGGAGGCTGTCTTTTGGGGAAGATAGTGCTGAAGGGAAGAACGACAGGGGGGTTTTGAGGTCGGTGCGGTACGATTCGAACGATGAGTTTGACGTTCGGAAATCCATTTGTGGAGGGTTTCAAAAGAGTGGTAGAAAAGTGGAGGGAAGAGAAGGGTCTCAGAAGTTGATGGGCATGCATAAACCTGGGACTGCTAAAGACTCGAAATGGATGAAGAACGGAGGAGTTTTCGGAACGGAGGAATTCGAACGAGAAGCAGTTAAGAAAGAATACAGATCAACAGGTTCTGTGAGAAATGATGTACTGGAAATGTTAGCAGCAGTAAAGAATCAAGATTTATCTTCACGGAATTCGAGAACTTCCGGTCTGGAAACAATTGAGGAAGAGGCTTTGAACCCGGAGACTGCAGAAGAAAAACAGAGTTCAGATTGGCAGAGATTGAAAGAAAGGAAATTGGAACAGGTGAAGTCGAAGGGCGAGAAACACCGGAAATCTCTCTACATAAGCAGGGAATTGCAGAGGAGAAGGACAAGGAGAAGTTGCAAAGTCAGAGTCTGTTCTCCGCGGACAGCTTCAAGGGTCGAAATCTGCAAAGTGAAGGCTCTCGAAGACATGACGAAAGCCAAACTGAAGACTGAAAGTGAGGCTAAGGAGAGAGCGGTACAGCAGGTAAGAACAGGGTTGAACAGCTTTGCAGTGGTGAAGTGCTCGTTCGAACCACAGAAGGACTTCAGAGACTCCATGGTTGAGATGATTGTGGAGAAAAAGATAACACAGCCGGAGGATCTGGAAGAGCTCTTGGCTTGTTACCTGACCTTGAATTCCAACGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTATGGTTTGACATGAACCGGACCTGTTTCGGTACTGAACTACAGAATGAACAATATGGCAGCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

397

Amino Acids

45.2

Weight (kDa)

9.42

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	323 - 379	1.3e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	916, 1111
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	917
AccII	CGCG	1 cut(s)	823
AciI	CCGC	5 cut(s)	179, 325, 821, 823, 917
AclWI	GGATC	1 cut(s)	1050
AcsI	RAATTY	5 cut(s)	127, 172, 500, 607, 1078
AcuI	CTGAAG	3 cut(s)	309, 908, 973
AfaI	GTAC	5 cut(s)	13, 329, 561, 921, 1156
AfiI	CCNNNNNNNGG	2 cut(s)	149, 200
AgsI	TTSAA	8 cut(s)	60, 112, 380, 652, 700, 834, 943, 1078
AjnI	CCWGG	2 cut(s)	143, 442
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	830, 948, 1054
AluI	AGCT	3 cut(s)	830, 948, 1054
Alw21I	GWGCWC	2 cut(s)	968, 1056
Alw26I	GTCTC	3 cut(s)	420, 653, 987
AlwI	GGATC	1 cut(s)	1050
AlwNI	CAGNNNCTG	2 cut(s)	545, 813
ApeKI	GCWGC	2 cut(s)	575, 1182
ApoI	RAATTY	5 cut(s)	127, 172, 500, 607, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	795, 827
Asp700I	GAANNNNTTC	1 cut(s)	986
Asp718I	GGTACC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	1143
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	733, 970
AsuII	TTCGAA	3 cut(s)	335, 504, 972
AvaII	GGWCC	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	1056
BauI	CACGAG	1 cut(s)	78
BbsI	GAAGAC	2 cut(s)	873, 896
Bbv12I	GWGCWC	2 cut(s)	968, 1056
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	2 cut(s)	145, 444
BcnI	CCSGG	1 cut(s)	656
BcoDI	GTCTC	3 cut(s)	420, 653, 987
BfmI	CTRYAG	2 cut(s)	663, 1163
BfuAI	ACCTGC	2 cut(s)	916, 1111
BisI	GCNGC	2 cut(s)	576, 1183
BlsI	GCNGC	2 cut(s)	577, 1184
Bme1390I	CCNGG	3 cut(s)	145, 444, 656
Bme18I	GGWCC	1 cut(s)	1143
BmgT120I	GGNCC	1 cut(s)	1143
BmiI	GGNNCC	2 cut(s)	13, 135
BmrFI	CCNGG	3 cut(s)	145, 444, 656
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	2 cut(s)	873, 896
Bpu10I	CCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	3 cut(s)	335, 504, 972
BpuMI	CCSGG	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	5 cut(s)	143, 194, 443, 821, 999
BsaWI	WCCGGW	4 cut(s)	156, 620, 744, 1140
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 200
Bse1I	ACTGG	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	145, 444
BseDI	CCNNGG	5 cut(s)	143, 194, 443, 821, 999
BseGI	GGATG	3 cut(s)	241, 253, 474
BseLI	CCNNNNNNNGG	2 cut(s)	149, 200
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	2 cut(s)	495, 793
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	823
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	968, 1056
BsiSI	CCGG	7 cut(s)	157, 621, 656, 745, 1037, 1117, 1141
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	149, 200
BsmAI	GTCTC	3 cut(s)	420, 653, 987
BsmFI	GGGAC	1 cut(s)	460
Bso31I	GGTCTC	1 cut(s)	420
Bsp119I	TTCGAA	3 cut(s)	335, 504, 972
Bsp1286I	GDGCHC	2 cut(s)	968, 1056
Bsp143I	GATC	4 cut(s)	72, 533, 1042, 1096
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	5 cut(s)	179, 325, 821, 823, 917
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	823
BspLI	GGNNCC	2 cut(s)	13, 135
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	2 cut(s)	916, 1111
BspPI	GGATC	1 cut(s)	1050
BspQI	GCTCTTC	1 cut(s)	1044
BspT104I	TTCGAA	3 cut(s)	335, 504, 972
BspT107I	GGYRCC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	420
BsrBI	CCGCTC	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	5 cut(s)	143, 194, 443, 821, 999
BssMI	GATC	4 cut(s)	72, 533, 1042, 1096
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	2 cut(s)	194, 999
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	145, 444
Bst6I	CTCTTC	3 cut(s)	400, 636, 1044
BstBI	TTCGAA	3 cut(s)	335, 504, 972
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	417, 906
BstDSI	CCRYGG	2 cut(s)	821, 999
BstF5I	GGATG	3 cut(s)	241, 253, 474
BstFNI	CGCG	1 cut(s)	823
BstKTI	GATC	4 cut(s)	75, 536, 1045, 1099
BstMAI	GTCTC	3 cut(s)	420, 653, 987
BstMBI	GATC	4 cut(s)	72, 533, 1042, 1096
BstNI	CCWGG	2 cut(s)	145, 444
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	143, 442, 654
BstSFI	CTRYAG	2 cut(s)	663, 1163
BstUI	CGCG	1 cut(s)	823
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	2 cut(s)	873, 896
BstX2I	RGATCY	1 cut(s)	1042
BstXI	CCANNNNNNTGG	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	1042
BtgI	CCRYGG	2 cut(s)	821, 999
BtsCI	GGATG	3 cut(s)	241, 253, 474
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	1 cut(s)	960
BveI	ACCTGC	2 cut(s)	916, 1111
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	2 cut(s)	545, 813
Cfr13I	GGNCC	1 cut(s)	1143
Cfr42I	CCGCGG	1 cut(s)	824
Csp6I	GTAC	5 cut(s)	12, 328, 560, 920, 1155
CviAII	CATG	8 cut(s)	96, 209, 227, 433, 871, 1000, 1094, 1135
CviQI	GTAC	5 cut(s)	12, 328, 560, 920, 1155
DdeI	CTNAG	2 cut(s)	417, 906
DpnI	GATC	4 cut(s)	74, 535, 1044, 1098
DpnII	GATC	4 cut(s)	72, 533, 1042, 1096
Eam1104I	CTCTTC	3 cut(s)	400, 636, 1044
EarI	CTCTTC	3 cut(s)	400, 636, 1044
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	1054
Eco130I	CCWWGG	2 cut(s)	194, 999
Eco24I	GRGCYC	1 cut(s)	1056
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	1143
Eco53kI	GAGCTC	1 cut(s)	1054
Eco57I	CTGAAG	3 cut(s)	309, 908, 973
EcoICRI	GAGCTC	1 cut(s)	1054
EcoRI	GAATTC	5 cut(s)	127, 172, 500, 607, 1078
EcoRII	CCWGG	2 cut(s)	143, 442
EcoT14I	CCWWGG	2 cut(s)	194, 999
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	1056
ErhI	CCWWGG	2 cut(s)	194, 999
FaeI	CATG	8 cut(s)	99, 212, 230, 436, 874, 1003, 1097, 1138
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	8 cut(s)	95, 208, 226, 432, 870, 999, 1093, 1134
Fnu4HI	GCNGC	2 cut(s)	576, 1183
FokI	GGATG	3 cut(s)	248, 260, 481
FriOI	GRGCYC	1 cut(s)	1056
Fsp4HI	GCNGC	2 cut(s)	576, 1183
GluI	GCNGC	2 cut(s)	576, 1183
HapII	CCGG	7 cut(s)	157, 621, 656, 745, 1037, 1117, 1141
Hin1II	CATG	8 cut(s)	99, 212, 230, 436, 874, 1003, 1097, 1138
HinfI	GANTC	6 cut(s)	28, 332, 458, 586, 810, 995
HpaII	CCGG	7 cut(s)	157, 621, 656, 745, 1037, 1117, 1141
HphI	GGTGA	2 cut(s)	733, 970
Hpy188I	TCNGA	8 cut(s)	72, 133, 357, 420, 491, 685, 809, 992
Hpy188III	TCNNGA	5 cut(s)	590, 612, 626, 863, 1046
HpyAV	CCTTC	8 cut(s)	75, 142, 284, 404, 724, 777, 850, 976
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	6 cut(s)	436, 665, 775, 801, 849, 953
HpyF3I	CTNAG	2 cut(s)	417, 906
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	8 cut(s)	99, 212, 230, 436, 874, 1003, 1097, 1138
KpnI	GGTACC	1 cut(s)	15
KspI	CCGCGG	1 cut(s)	824
Kzo9I	GATC	4 cut(s)	72, 533, 1042, 1096
LguI	GCTCTTC	1 cut(s)	1044
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	1064
MalI	GATC	4 cut(s)	74, 535, 1044, 1098
MbiI	CCGCTC	1 cut(s)	917
MboI	GATC	4 cut(s)	72, 533, 1042, 1096
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	1042
MhlI	GDGCHC	2 cut(s)	968, 1056
MluCI	AATT	8 cut(s)	127, 172, 500, 607, 633, 710, 770, 1078
MlyI	GAGTC	3 cut(s)	452, 819, 989
MmeI	TCCRAC	1 cut(s)	1107
Mph1103I	ATGCAT	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	986
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	2 cut(s)	120, 213
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	7 cut(s)	157, 621, 656, 745, 1037, 1117, 1141
MspR9I	CCNGG	3 cut(s)	145, 444, 656
MunI	CAATTG	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	145, 444
MvnI	CGCG	1 cut(s)	823
NciI	CCSGG	1 cut(s)	656
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	4 cut(s)	72, 533, 1042, 1096
NlaIII	CATG	8 cut(s)	99, 212, 230, 436, 874, 1003, 1097, 1138
NlaIV	GGNNCC	2 cut(s)	13, 135
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	1 cut(s)	436
NspV	TTCGAA	3 cut(s)	335, 504, 972
OliI	CACNNNNGTG	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	1044
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	986
PfeI	GAWTC	3 cut(s)	28, 332, 586
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	577, 1184
PleI	GAGTC	3 cut(s)	452, 818, 989
PpsI	GAGTC	3 cut(s)	452, 818, 989
Psp124BI	GAGCTC	1 cut(s)	1056
Psp6I	CCWGG	2 cut(s)	143, 442
PspGI	CCWGG	2 cut(s)	143, 442
PspN4I	GGNNCC	2 cut(s)	13, 135
PspPI	GGNCC	1 cut(s)	1143
PstI	CTGCAG	1 cut(s)	667
PstNI	CAGNNNCTG	2 cut(s)	545, 813
PsuI	RGATCY	1 cut(s)	1042
RsaI	GTAC	5 cut(s)	13, 329, 561, 921, 1156
RsaNI	GTAC	5 cut(s)	12, 328, 560, 920, 1155
RseI	CAYNNNNRTG	2 cut(s)	120, 213
SacI	GAGCTC	1 cut(s)	1056
SacII	CCGCGG	1 cut(s)	824
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	2 cut(s)	576, 1183
Sau3AI	GATC	4 cut(s)	72, 533, 1042, 1096
Sau96I	GGNCC	1 cut(s)	1143
SchI	GAGTC	3 cut(s)	452, 819, 989
ScrFI	CCNGG	3 cut(s)	145, 444, 656
SduI	GDGCHC	2 cut(s)	968, 1056
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	663, 1163
Sfr303I	CCGCGG	1 cut(s)	824
SfuI	TTCGAA	3 cut(s)	335, 504, 972
SgrBI	CCGCGG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	1143
SmiMI	CAYNNNNRTG	2 cut(s)	120, 213
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	8 cut(s)	127, 172, 500, 607, 633, 710, 770, 1078
SsiI	CCGC	5 cut(s)	179, 325, 821, 823, 917
SstI	GAGCTC	1 cut(s)	1056
StyD4I	CCNGG	3 cut(s)	143, 442, 654
StyI	CCWWGG	2 cut(s)	194, 999
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	8 cut(s)	335, 461, 504, 611, 728, 840, 864, 972
TasI	AATT	8 cut(s)	127, 172, 500, 607, 633, 710, 770, 1078
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	3 cut(s)	28, 332, 586
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	960
TseI	GCWGC	2 cut(s)	575, 1182
TspDTI	ATGAA	6 cut(s)	17, 84, 215, 485, 1151, 1185
TspGWI	ACGGA	3 cut(s)	492, 509, 619
TspRI	CASTG	1 cut(s)	960
Van91I	CCANNNNNTGG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	1143
XapI	RAATTY	5 cut(s)	127, 172, 500, 607, 1078
XceI	RCATGY	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	986
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.