Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

7771096 .. 7772265

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG088200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAAGTGGGGTAGTGGTAGCAAAACCAAAAAGCCTCCACCTTCCTTTTCTGCTTCTTCTTCTTCTACTTCTAAGCCTTCTTTGATCTCTCATGTCTTTCCAAGTTCATGGCTTTCGAAGTTCAAGCAAAAGACTGGCAATTCAGAGTCGAAACCCGGTAAAGTAAATCGAAAAGGGAAGCGGAATTCTCCATCTTTGGGTTCACCAAGGATTGCTAGTGGGGGTGGTGGCAGATTCTATGGTGATGATGATGGTGTTGATGGATATTGGAGGCTGTCTTTTGGTGAGGATAGTGTTGAAGAAGAGAAGAAGAGTAGGGGTGCATTACGATCGGTTCGGTATGAATCCGATGAAGAATTTGAAGCTAAGCCCTCGAAGGTGATAGGCATGAGTAAAAGTGGGAATGCTAAAGAGTGGAAGTTGAGGAAAGGAAATAAAGGAGTTTCAGGGAAGAAGGGGTTAGAATTAGAAAGAGAAGCAGAGGAATTAGAAGAGAGATCAAGCAAAACAGGCGAAGAGGATGATGTACCGGAAATGTTAGCAGCAAGCACAATGTTGACAAAGGAGAAGGATGGTAAGCATGGATTGGCTTCTGGTGCAAGGAAATATCATTATGCATCTTCGAATCTCAAAACAATTGAAGAAGAAGGATCTGAAGAAAAGCCCACTTCAGATTGGCAAAAATTGAAGGAAAGGAAAATACAAGAGGTGATGGAAAAGAGTGAGAAACATAGGAAATCTCTCTACATAAGCAGGGACTTACAGAGGAAACCAAGACCAAAGCGGAGTAACAGAGTCAGAGTTTGCTCTCCAAGAACAGCTTCAAGAGTTGAAATCTGCAAATTCAAAGCTCTCCAAGAGATGGCGAAAGCGAAAAAGGCAGCTAAGGAGAGAAAGGTGCAGCAGGTGAGAACAGGCTTGGATAGCTTTGCAGTGGTGAAGTGCTCATTCGACCCGCAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAAAAGATTACCCGACCAGACGATCTTGAAGAGCTCTTAGCTTGTTACCTGACACTGAATTCCGATGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTATGGTTTGATTTGAATCAAACCTGTTTTGGTAGTGAACTACAGAATGATCAATGTTGCAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

389

Amino Acids

43.96

Weight (kDa)

9.29

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	316 - 372	1.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
Acc36I	ACCTGC	2 cut(s)	895, 1090
AccB7I	CCANNNNNTGG	1 cut(s)	862
AciI	CCGC	3 cut(s)	181, 784, 956
AclWI	GGATC	1 cut(s)	658
AcsI	RAATTY	4 cut(s)	184, 356, 842, 1057
AcuI	CTGAAG	3 cut(s)	654, 675, 952
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	197, 862, 961
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AluBI	AGCT	7 cut(s)	365, 821, 851, 884, 927, 1033, 1040
AluI	AGCT	7 cut(s)	365, 821, 851, 884, 927, 1033, 1040
Alw21I	GWGCWC	2 cut(s)	947, 1035
AlwI	GGATC	1 cut(s)	658
ApeKI	GCWGC	3 cut(s)	542, 881, 901
ApoI	RAATTY	4 cut(s)	184, 356, 842, 1057
Asp700I	GAANNNNTTC	1 cut(s)	820
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	7 cut(s)	195, 254, 296, 391, 721, 919, 949
AsuII	TTCGAA	2 cut(s)	116, 623
BanII	GRGCYC	1 cut(s)	1035
Bbv12I	GWGCWC	2 cut(s)	947, 1035
BbvI	GCAGC	3 cut(s)	554, 893, 913
BccI	CCATC	6 cut(s)	199, 245, 254, 566, 706, 856
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BclI	TGATCA	1 cut(s)	1150
BcnI	CCSGG	1 cut(s)	156
BfaI	CTAG	2 cut(s)	216, 1168
BfmI	CTRYAG	1 cut(s)	1142
BfuAI	ACCTGC	2 cut(s)	895, 1090
BisI	GCNGC	3 cut(s)	543, 882, 902
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	3 cut(s)	544, 883, 903
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	2 cut(s)	116, 623
BpuMI	CCSGG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaJI	CCNNGG	2 cut(s)	206, 978
BsaWI	WCCGGW	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 862, 961
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	1168
Bse8I	GATNNNNATC	1 cut(s)	1116
BseDI	CCNNGG	2 cut(s)	206, 978
BseGI	GGATG	2 cut(s)	526, 577
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	3 cut(s)	197, 862, 961
BseMI	GCAATG	1 cut(s)	1168
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	554, 893, 913
BsgI	GTGCAG	1 cut(s)	920
Bsh1285I	CGRYCG	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	947, 1035
BsiSI	CCGG	3 cut(s)	156, 530, 1096
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	197, 862, 961
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	409
Bsp119I	TTCGAA	2 cut(s)	116, 623
Bsp1286I	GDGCHC	2 cut(s)	947, 1035
Bsp143I	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp19I	CCATGG	1 cut(s)	978
BspACI	CCGC	3 cut(s)	181, 784, 956
BspMI	ACCTGC	2 cut(s)	895, 1090
BspPI	GGATC	1 cut(s)	658
BspQI	GCTCTTC	1 cut(s)	1023
BspT104I	TTCGAA	2 cut(s)	116, 623
BsrDI	GCAATG	1 cut(s)	1168
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	206, 978
BssMI	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
BssT1I	CCWWGG	2 cut(s)	206, 978
Bst6I	CTCTTC	5 cut(s)	297, 305, 486, 510, 1023
BstBI	TTCGAA	2 cut(s)	116, 623
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	4 cut(s)	72, 366, 885, 1036
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	2 cut(s)	526, 577
BstKTI	GATC	7 cut(s)	87, 332, 500, 653, 1024, 1078, 1153
BstMBI	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	4 cut(s)	510, 596, 878, 924
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	1142
BstV1I	GCAGC	3 cut(s)	554, 893, 913
BstX2I	RGATCY	1 cut(s)	650
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	650
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	526, 577
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	939, 1052
BveI	ACCTGC	2 cut(s)	895, 1090
Cac8I	GCNNGC	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	6 cut(s)	92, 108, 388, 581, 979, 1073
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	4 cut(s)	72, 366, 885, 1036
DpnI	GATC	7 cut(s)	86, 331, 499, 652, 1023, 1077, 1152
DpnII	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
Eam1104I	CTCTTC	5 cut(s)	297, 305, 486, 510, 1023
EarI	CTCTTC	5 cut(s)	297, 305, 486, 510, 1023
Ecl136II	GAGCTC	1 cut(s)	1033
Eco130I	CCWWGG	2 cut(s)	206, 978
Eco24I	GRGCYC	1 cut(s)	1035
Eco53kI	GAGCTC	1 cut(s)	1033
Eco57I	CTGAAG	3 cut(s)	654, 675, 952
EcoICRI	GAGCTC	1 cut(s)	1033
EcoRI	GAATTC	2 cut(s)	184, 1057
EcoT14I	CCWWGG	2 cut(s)	206, 978
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	1 cut(s)	1035
ErhI	CCWWGG	2 cut(s)	206, 978
FaeI	CATG	6 cut(s)	95, 111, 391, 584, 982, 1076
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	6 cut(s)	91, 107, 387, 580, 978, 1072
FauI	CCCGC	1 cut(s)	963
FbaI	TGATCA	1 cut(s)	1150
Fnu4HI	GCNGC	3 cut(s)	543, 882, 902
FokI	GGATG	2 cut(s)	533, 584
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	3 cut(s)	543, 882, 902
FspBI	CTAG	2 cut(s)	216, 1168
GluI	GCNGC	3 cut(s)	543, 882, 902
HapII	CCGG	3 cut(s)	156, 530, 1096
Hin1II	CATG	6 cut(s)	95, 111, 391, 584, 982, 1076
HincII	GTYRAC	1 cut(s)	558
HindII	GTYRAC	1 cut(s)	558
HinfI	GANTC	7 cut(s)	146, 234, 344, 625, 795, 974, 1117
HpaII	CCGG	3 cut(s)	156, 530, 1096
HphI	GGTGA	7 cut(s)	195, 254, 296, 391, 721, 919, 949
Hpy166II	GTNNAC	3 cut(s)	203, 558, 1139
Hpy188I	TCNGA	7 cut(s)	145, 349, 655, 673, 800, 971, 1063
Hpy188III	TCNNGA	2 cut(s)	825, 1025
Hpy8I	GTNNAC	3 cut(s)	203, 558, 1139
HpyAV	CCTTC	7 cut(s)	51, 87, 370, 448, 562, 641, 682
HpyCH4V	TGCA	7 cut(s)	323, 599, 617, 840, 901, 932, 1161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	510, 596, 878, 924
HpyF3I	CTNAG	4 cut(s)	72, 366, 885, 1036
Hsp92II	CATG	6 cut(s)	95, 111, 391, 584, 982, 1076
Ksp22I	TGATCA	1 cut(s)	1150
Kzo9I	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
LguI	GCTCTTC	1 cut(s)	1023
Lsp1109I	GCAGC	3 cut(s)	554, 893, 913
LweI	GCATC	1 cut(s)	626
MaeI	CTAG	2 cut(s)	216, 1168
MaeIII	GTNAC	2 cut(s)	788, 1043
MalI	GATC	7 cut(s)	86, 331, 499, 652, 1023, 1077, 1152
MboI	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	947, 1035
MluCI	AATT	9 cut(s)	139, 184, 356, 464, 485, 636, 683, 842, 1057
MlyI	GAGTC	2 cut(s)	155, 804
MnlI	CCTC	9 cut(s)	45, 264, 280, 382, 417, 475, 511, 700, 759
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	820
MspI	CCGG	3 cut(s)	156, 530, 1096
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	4 cut(s)	510, 596, 878, 924
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
NlaIII	CATG	6 cut(s)	95, 111, 391, 584, 982, 1076
NsiI	ATGCAT	1 cut(s)	619
NspV	TTCGAA	2 cut(s)	116, 623
PaqCI	CACCTGC	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	1023
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	5 cut(s)	234, 344, 625, 974, 1117
PflMI	CCANNNNNTGG	1 cut(s)	862
PkrI	GCNGC	3 cut(s)	544, 883, 903
Ple19I	CGATCG	1 cut(s)	332
PleI	GAGTC	2 cut(s)	154, 803
PpsI	GAGTC	2 cut(s)	154, 803
Psp124BI	GAGCTC	1 cut(s)	1035
PsuI	RGATCY	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	1035
SapI	GCTCTTC	1 cut(s)	1023
SatI	GCNGC	3 cut(s)	543, 882, 902
Sau3AI	GATC	7 cut(s)	84, 329, 497, 650, 1021, 1075, 1150
SchI	GAGTC	2 cut(s)	155, 804
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	2 cut(s)	947, 1035
SfaNI	GCATC	1 cut(s)	626
SfcI	CTRYAG	1 cut(s)	1142
SfuI	TTCGAA	2 cut(s)	116, 623
Sse9I	AATT	9 cut(s)	139, 184, 356, 464, 485, 636, 683, 842, 1057
SsiI	CCGC	3 cut(s)	181, 784, 956
SspMI	CTAG	2 cut(s)	216, 1168
SstI	GAGCTC	1 cut(s)	1035
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	2 cut(s)	206, 978
TaqI	TCGA	6 cut(s)	116, 149, 169, 374, 623, 951
TasI	AATT	9 cut(s)	139, 184, 356, 464, 485, 636, 683, 842, 1057
TfiI	GAWTC	5 cut(s)	234, 344, 625, 974, 1117
TscAI	CASTG	2 cut(s)	939, 1059
TseI	GCWGC	3 cut(s)	542, 881, 901
TspDTI	ATGAA	5 cut(s)	17, 96, 357, 366, 1080
TspRI	CASTG	2 cut(s)	939, 1059
Van91I	CCANNNNNTGG	1 cut(s)	862
XapI	RAATTY	4 cut(s)	184, 356, 842, 1057
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	2 cut(s)	216, 1168
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.