Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014292

Physical Location & Seq

Genomic Coordinates Forward (+)

7599775 .. 7600557

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGTAAAAGTGGGAATGCTAAAGAGTGGAAGTTGAGGAAAGGAAATAAAGGAGTTTCAGGGAAGAAGGGGTTAGAATTAGAAAGAGAAGCAGAGGAATCAGAAGAGAGATCAAGCAAAACAGGCGAAGAGGATGATGTACTGGAAATGTTAGCAGCAAGAACAATGTTGACAAAGGAGAAGGATAGTAAGCATGGATTGGCTTCTGGTGCAAGGAAATATCATTATGCATCTTCGAATCTCAAAACAATTGAAGAAGAAGGTTCTGAAGAAAAGCCGACTTCAGATTGGCAAAAATTGAAGGAAAGGAAAATACAAGAGGTGATGGAAAAGAGTGAGAAACATAGGAAATCTCTCTACATAAGCAGGGACTTACAGAGGAAACCAAGACCAAAGCGGAGTAACAGAGTCAGAGTTTGCTCTCCAAGAACAGCTTCAAGAGTTGAAATCTGCAAAATCAAAGCTCTCCAAGAGATGGCGAAAGCGAAAAAGGCAGCTAAGGAGAGAAAGGTGCAGCAGGTGAGAACAGGCTTGGATAGCTTTGCAGTGGTGAAGTGCTCATTCGACCCGCAACAGGACTTCAGAGATTCCATGGTTGAGATGATTGTGGAGAAAAAGATTACCCGGCCAGACGATCTTGAAGAGCTCTTAGCTTGTTACCTGACACTGAATTCCGATGAATACCATGATCTCATCATCAAGGTATTCCGGCAGGTATGGTTTGATTTGAATCAAACCTGTTTTGGTAGTGAACGACAGAATGATCAATGTTGCAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

260

Amino Acids

30.04

Weight (kDa)

9.09

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	187 - 243	9.1e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014292)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18830
fragaria_vesca	FvH4_3g07180 FvH4_3g07200
malus_domestica	MD00G1007900.v1.1 MD10G1274500.v1.1
prunus_persica	Prupe.4G068000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011951
rosa_laevigata	RLG00000031872
rosa_multiflora	Rmu_sc0001475.1_g000002 Rmu_ssc0000009.1_g000033
rosa_roxburghii	Rroxscaffold_1G00064640
rosa_rugosa	Rorug04G0460100
rosa_samantha	Rh5AG091900 Rh5BG087600 Rh5CG101600 Rh5DG088200
rosa_wichuraiana	Rw5G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	2 cut(s)	508, 703
AccB7I	CCANNNNNTGG	1 cut(s)	475
AciI	CCGC	2 cut(s)	397, 569
AcoI	YGGCCR	1 cut(s)	626
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	3 cut(s)	267, 288, 565
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	475, 574
AgsI	TTSAA	6 cut(s)	254, 301, 438, 446, 641, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	434, 464, 497, 540, 646, 653
AluI	AGCT	6 cut(s)	434, 464, 497, 540, 646, 653
Alw21I	GWGCWC	2 cut(s)	560, 648
AoxI	GGCC	1 cut(s)	626
ApeKI	GCWGC	3 cut(s)	155, 494, 514
ApoI	RAATTY	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	334, 532, 562
AsuII	TTCGAA	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	560, 648
BbvI	GCAGC	3 cut(s)	167, 506, 526
BccI	CCATC	2 cut(s)	319, 469
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	625
BfaI	CTAG	1 cut(s)	781
BfuAI	ACCTGC	2 cut(s)	508, 703
BisI	GCNGC	3 cut(s)	156, 495, 515
BlsI	GCNGC	3 cut(s)	157, 496, 516
Bme1390I	CCNGG	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 574
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	781
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	2 cut(s)	475, 574
BseMI	GCAATG	1 cut(s)	781
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	167, 506, 526
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	628
BsiHKAI	GWGCWC	2 cut(s)	560, 648
BsiSI	CCGG	2 cut(s)	625, 709
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	475, 574
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	628
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	560, 648
Bsp143I	GATC	4 cut(s)	110, 634, 688, 763
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	2 cut(s)	397, 569
BspANI	GGCC	1 cut(s)	628
BspMI	ACCTGC	2 cut(s)	508, 703
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	781
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	4 cut(s)	110, 634, 688, 763
BssT1I	CCWWGG	1 cut(s)	591
Bst6I	CTCTTC	3 cut(s)	99, 123, 636
BstBI	TTCGAA	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	498, 649
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	4 cut(s)	113, 637, 691, 766
BstMBI	GATC	4 cut(s)	110, 634, 688, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 209, 491, 537
BstSCI	CCNGG	1 cut(s)	623
BstV1I	GCAGC	3 cut(s)	167, 506, 526
BsuRI	GGCC	1 cut(s)	628
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	552, 665
BveI	ACCTGC	2 cut(s)	508, 703
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	3 cut(s)	194, 592, 686
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	498, 649
DpnI	GATC	4 cut(s)	112, 636, 690, 765
DpnII	GATC	4 cut(s)	110, 634, 688, 763
EaeI	YGGCCR	1 cut(s)	626
Eam1104I	CTCTTC	3 cut(s)	99, 123, 636
EarI	CTCTTC	3 cut(s)	99, 123, 636
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	3 cut(s)	267, 288, 565
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	3 cut(s)	197, 595, 689
FaiI	YATR	7 cut(s)	195, 228, 345, 362, 593, 687, 718
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	193, 591, 685
FauI	CCCGC	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	156, 495, 515
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	156, 495, 515
FspBI	CTAG	1 cut(s)	781
GluI	GCNGC	3 cut(s)	156, 495, 515
HaeIII	GGCC	1 cut(s)	628
HapII	CCGG	2 cut(s)	625, 709
Hin1II	CATG	3 cut(s)	197, 595, 689
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HinfI	GANTC	5 cut(s)	98, 238, 408, 587, 730
HpaII	CCGG	2 cut(s)	625, 709
HphI	GGTGA	3 cut(s)	334, 532, 562
Hpy166II	GTNNAC	2 cut(s)	171, 752
Hpy188I	TCNGA	6 cut(s)	103, 268, 286, 413, 584, 676
Hpy188III	TCNNGA	2 cut(s)	438, 638
Hpy8I	GTNNAC	2 cut(s)	171, 752
HpyAV	CCTTC	4 cut(s)	61, 175, 254, 295
HpyCH4V	TGCA	6 cut(s)	212, 230, 453, 514, 545, 774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 209, 491, 537
HpyF3I	CTNAG	2 cut(s)	498, 649
Hsp92II	CATG	3 cut(s)	197, 595, 689
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	110, 634, 688, 763
LguI	GCTCTTC	1 cut(s)	636
Lsp1109I	GCAGC	3 cut(s)	167, 506, 526
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	401, 656
MalI	GATC	4 cut(s)	112, 636, 690, 765
MboI	GATC	4 cut(s)	110, 634, 688, 763
MboII	GAAGA	8 cut(s)	76, 116, 140, 225, 266, 269, 281, 653
MfeI	CAATTG	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	560, 648
MluCI	AATT	4 cut(s)	77, 249, 296, 670
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	30, 88, 124, 313, 372
Mph1103I	ATGCAT	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	433
MspI	CCGG	2 cut(s)	625, 709
MspR9I	CCNGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	123, 209, 491, 537
NciI	CCSGG	1 cut(s)	625
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	4 cut(s)	110, 634, 688, 763
NlaIII	CATG	3 cut(s)	197, 595, 689
NsiI	ATGCAT	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	98, 238, 587, 730
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	157, 496, 516
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	648
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	636
SatI	GCNGC	3 cut(s)	156, 495, 515
Sau3AI	GATC	4 cut(s)	110, 634, 688, 763
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	2 cut(s)	560, 648
SfaNI	GCATC	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	236
Sse9I	AATT	4 cut(s)	77, 249, 296, 670
SsiI	CCGC	2 cut(s)	397, 569
SspMI	CTAG	1 cut(s)	781
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	1 cut(s)	591
TaqI	TCGA	2 cut(s)	236, 564
TasI	AATT	4 cut(s)	77, 249, 296, 670
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	4 cut(s)	98, 238, 587, 730
TscAI	CASTG	2 cut(s)	552, 672
TseI	GCWGC	3 cut(s)	155, 494, 514
TspDTI	ATGAA	1 cut(s)	693
TspRI	CASTG	2 cut(s)	552, 672
Van91I	CCANNNNNTGG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	1 cut(s)	781
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.