Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Reverse (-)

10391884 .. 10393923

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18975.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCGCTCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAAAGTTCTCAGAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGCAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAATGGGTAGCTTGGGAGGTTGAATTTCCCATTATTGCTGCAGCTAAGGCGTTGCAAATCTTAAGAAAGAGAAGTCAGTGGCATCGTGTGATTCAATTGGCTAAGTGGATGTTAAGCAAAGGGCAAGGTGCTACAATGGGAACATACGATATCCTCTTATTGGCATTTGATATGGACGAAAGGGCTGATGAGGCAGAGTCCTTATGGAACATGATTCTGCACACACATACACGATCCATCCCAAGACGCTTGTTCGCTAGGATGATAGCGTTGTATGCTCACCATGACCTTCACGATAAGGTTATCGAGGTCTTTGCAGACATGGAAGAGCTGAAGGTGAGCCCAGACGAAGACTCTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAGAAAATCGAAAACTGATCCTTAGAAGGTACCTCTCTGAATACAAATACATCTACTTCAATGGTGAGCGGGTTAGAGTCAAAAGATATTTCTCTGAAGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

287

Amino Acids

33.25

Weight (kDa)

9.59

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	1 cut(s)	786
AccBSI	CCGCTC	1 cut(s)	826
AciI	CCGC	2 cut(s)	105, 826
AclWI	GGATC	2 cut(s)	588, 769
AcsI	RAATTY	2 cut(s)	68, 383
AcuI	CTGAAG	2 cut(s)	713, 724
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	4 cut(s)	29, 47, 104, 520
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	7 cut(s)	19, 92, 124, 358, 383, 455, 817
AluBI	AGCT	5 cut(s)	176, 353, 371, 404, 691
AluI	AGCT	5 cut(s)	176, 353, 371, 404, 691
AlwI	GGATC	2 cut(s)	588, 769
ApeKI	GCWGC	2 cut(s)	398, 401
ApoI	RAATTY	2 cut(s)	68, 383
Asp718I	GGTACC	1 cut(s)	786
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	632, 709, 833
AsuII	TTCGAA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	704
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	131, 717
BbvI	GCAGC	2 cut(s)	385, 413
BccI	CCATC	1 cut(s)	605
BcgI	CGANNNNNNTGC	4 cut(s)	656, 690, 698, 732
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	421
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
BmiI	GGNNCC	1 cut(s)	788
BmsI	GCATC	3 cut(s)	156, 256, 451
BpiI	GAAGAC	2 cut(s)	131, 717
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	2 cut(s)	12, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 47, 104, 520
Bse3DI	GCAATG	1 cut(s)	41
BseGI	GGATG	3 cut(s)	474, 597, 627
BseLI	CCNNNNNNNGG	4 cut(s)	29, 47, 104, 520
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	106, 736
BseXI	GCAGC	2 cut(s)	385, 413
BseYI	CCCAGC	2 cut(s)	176, 275
BsgI	GTGCAG	1 cut(s)	563
BshNI	GGYRCC	1 cut(s)	786
BslI	CCNNNNNNNGG	4 cut(s)	29, 47, 104, 520
BsmI	GAATGC	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	152, 593, 774
BspACI	CCGC	2 cut(s)	105, 826
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	788
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	588, 769
BspQI	GCTCTTC	1 cut(s)	681
BspT104I	TTCGAA	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	786
BspTI	CTTAAG	1 cut(s)	421
BsrBI	CCGCTC	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	41
BssMI	GATC	3 cut(s)	152, 593, 774
BssSI	CACGAG	1 cut(s)	732
Bst2BI	CACGAG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	681
BstAFI	CTTAAG	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	307
BstDEI	CTNAG	4 cut(s)	163, 405, 462, 779
BstF5I	GGATG	3 cut(s)	474, 597, 627
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	155, 596, 777
BstMBI	GATC	3 cut(s)	152, 593, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 551, 635
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	2 cut(s)	385, 413
BstV2I	GAAGAC	2 cut(s)	131, 717
BtsCI	GGATG	3 cut(s)	474, 597, 627
BtsIMutI	CAGTG	2 cut(s)	204, 443
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	787
CviAII	CATG	3 cut(s)	571, 644, 682
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	4 cut(s)	163, 405, 462, 779
DpnI	GATC	3 cut(s)	154, 595, 776
DpnII	GATC	3 cut(s)	152, 593, 774
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	713, 724
EcoRV	GATATC	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	704
FaeI	CATG	3 cut(s)	574, 647, 685
FatI	CATG	3 cut(s)	570, 643, 681
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	2 cut(s)	399, 402
FokI	GGATG	3 cut(s)	481, 584, 634
FriOI	GRGCYC	1 cut(s)	704
Fsp4HI	GCNGC	2 cut(s)	399, 402
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	399, 402
GsaI	CCCAGC	2 cut(s)	180, 279
HaeII	RGCGCY	1 cut(s)	8
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	574, 647, 685
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	8 cut(s)	19, 269, 321, 451, 557, 574, 713, 834
HphI	GGTGA	3 cut(s)	632, 709, 833
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	152, 166, 796, 853
Hpy188III	TCNNGA	4 cut(s)	65, 282, 318, 653
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	163, 659, 688, 748, 777
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	46, 147, 401, 415, 580, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 551, 635
HpyF3I	CTNAG	4 cut(s)	163, 405, 462, 779
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	574, 647, 685
HspAI	GCGC	1 cut(s)	5
KpnI	GGTACC	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	152, 593, 774
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	6 cut(s)	162, 261, 267, 303, 717, 727
Lsp1109I	GCAGC	2 cut(s)	385, 413
LweI	GCATC	3 cut(s)	156, 256, 451
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	2 cut(s)	11, 110
MalI	GATC	3 cut(s)	154, 595, 776
MbiI	CCGCTC	1 cut(s)	826
MboI	GATC	3 cut(s)	152, 593, 774
MboII	GAAGA	7 cut(s)	136, 250, 271, 274, 698, 722, 770
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	4 cut(s)	68, 182, 383, 455
MlyI	GAGTC	5 cut(s)	263, 315, 566, 707, 843
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	9 cut(s)	127, 185, 331, 370, 524, 544, 661, 714, 800
MseI	TTAA	3 cut(s)	297, 422, 473
MspCI	CTTAAG	1 cut(s)	421
MunI	CAATTG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	407, 551, 635
NdeII	GATC	3 cut(s)	152, 593, 774
NlaIII	CATG	3 cut(s)	574, 647, 685
NlaIV	GGNNCC	1 cut(s)	788
NspV	TTCGAA	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	19, 451, 574
PkrI	GCNGC	2 cut(s)	400, 403
PleI	GAGTC	5 cut(s)	263, 315, 565, 707, 842
PpsI	GAGTC	5 cut(s)	263, 315, 565, 707, 842
PspFI	CCCAGC	2 cut(s)	176, 275
PspN4I	GGNNCC	1 cut(s)	788
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	297, 422, 473
SatI	GCNGC	2 cut(s)	399, 402
Sau3AI	GATC	3 cut(s)	152, 593, 774
SchI	GAGTC	5 cut(s)	263, 315, 566, 707, 843
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	3 cut(s)	156, 256, 451
SfcI	CTRYAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	307
SmlI	CTYRAG	3 cut(s)	27, 63, 421
SmoI	CTYRAG	3 cut(s)	27, 63, 421
Sse9I	AATT	4 cut(s)	68, 182, 383, 455
SsiI	CCGC	2 cut(s)	105, 826
SspMI	CTAG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	307, 666, 766
TasI	AATT	4 cut(s)	68, 182, 383, 455
TfiI	GAWTC	3 cut(s)	19, 451, 574
Tru1I	TTAA	3 cut(s)	297, 422, 473
Tru9I	TTAA	3 cut(s)	297, 422, 473
TscAI	CASTG	2 cut(s)	211, 443
TseI	GCWGC	2 cut(s)	398, 401
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	211, 443
Vha464I	CTTAAG	1 cut(s)	421
XapI	RAATTY	2 cut(s)	68, 383
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.