Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Reverse (-)

8482073 .. 8485461

Gene Structure 3389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCAAGCCCAGGCCCATTCTCCCTGTCTTACTTTCTTGTTCCCAGCCATAAAACTGCACTGGCTATCTGCAATTTCTGGCTTCCACAGCTTTCAACACTTAAAACCCAAGCTGGGTTTTTCAAAACCTTAAGCTATCATTGTGATCCTGCAAAAGGTCTCAAATTTTCTCATACTCTTCAATACAATCCTCGTAGACATTCCTGGTTTTTGTCAAGTATAATGTTTGCGAGTTCTGGAAGCTCCATTTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCAGCTTTGTCGCGCGGGGTTGGCTTCTTTAATTGCAGAACTGCTCTCTTGCTGAAGTCTTCATCATTTCTCTCCGCAAGGAATTCTCTACACTACATTGTGGGTTTAAACACGTTCGATGTAAAGTGCTCCCAGAAGCAAAGTAGACAAACTATAACTGCTTCAAAAGCAATTGAGAAGAAAACAATCAAGAAGGTGGGAAGGAATGAGCACCACTTATGGAAGAAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAACCTTGTTAGAATTGTTTCCGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAAGAGGAGACAGTGGATGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAACAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATCATAGGCTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCTTACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTACGATCATCACGAAATGATAAATAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCTTTTCAGGAGCTAGGCCAAGAAGACAAGAGCAAACTTGTTTTGAGAAGATATGGGTGTAAATGGAAGTACATTCACTTCGAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGATGAAGATGAAATCCCAACCAATTCAAATGGGAGCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

382

Amino Acids

43.68

Weight (kDa)

9.7

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	196, 433
AccII	CGCG	2 cut(s)	301, 303
AciI	CCGC	3 cut(s)	303, 363, 859
AclWI	GGATC	2 cut(s)	140, 795
AcsI	RAATTY	3 cut(s)	164, 370, 669
AcuI	CTGAAG	2 cut(s)	306, 362
AcvI	CACGTG	1 cut(s)	986
AfaI	GTAC	2 cut(s)	887, 1058
AfiI	CCNNNNNNNGG	3 cut(s)	114, 155, 772
AflII	CTTAAG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	6 cut(s)	96, 124, 182, 453, 707, 1131
AjnI	CCWGG	2 cut(s)	10, 203
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	9 cut(s)	91, 113, 135, 243, 293, 527, 623, 656, 1000
AluI	AGCT	9 cut(s)	91, 113, 135, 243, 293, 527, 623, 656, 1000
Alw21I	GWGCWC	3 cut(s)	419, 501, 1142
Alw26I	GTCTC	3 cut(s)	164, 623, 679
AlwI	GGATC	2 cut(s)	140, 795
AoxI	GGCC	2 cut(s)	13, 1003
ApeKI	GCWGC	3 cut(s)	290, 650, 653
ApoI	RAATTY	3 cut(s)	164, 370, 669
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	1085
BarI	GAAGNNNNNNTAC	2 cut(s)	1049, 1081
BbrPI	CACGTG	1 cut(s)	986
BbsI	GAAGAC	2 cut(s)	339, 1017
Bbv12I	GWGCWC	3 cut(s)	419, 501, 1142
BbvI	GCAGC	3 cut(s)	302, 662, 665
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	2 cut(s)	12, 205
BcoDI	GTCTC	3 cut(s)	164, 623, 679
BfaI	CTAG	3 cut(s)	797, 870, 1001
BfrI	CTTAAG	1 cut(s)	130
BisI	GCNGC	4 cut(s)	291, 651, 654, 860
BlpI	GCTNAGC	1 cut(s)	725
BlsI	GCNGC	4 cut(s)	292, 652, 655, 861
Bme1390I	CCNGG	2 cut(s)	12, 205
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	12, 205
BmsI	GCATC	2 cut(s)	684, 711
BpiI	GAAGAC	2 cut(s)	339, 1017
Bpu10I	CCTNAGC	1 cut(s)	657
Bpu1102I	GCTNAGC	1 cut(s)	725
BsaAI	YACGTR	1 cut(s)	986
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 155, 772
Bse1I	ACTGG	3 cut(s)	66, 256, 777
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	2 cut(s)	12, 205
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	4 cut(s)	699, 726, 879, 1111
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	3 cut(s)	114, 155, 772
BseMII	CTCAG	1 cut(s)	537
BseNI	ACTGG	3 cut(s)	66, 256, 777
BseRI	GAGGAG	2 cut(s)	697, 953
BseXI	GCAGC	3 cut(s)	302, 662, 665
BseYI	CCCAGC	3 cut(s)	44, 113, 527
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	2 cut(s)	301, 303
BshFI	GGCC	2 cut(s)	15, 1005
BsiHKAI	GWGCWC	3 cut(s)	419, 501, 1142
BslI	CCNNNNNNNGG	3 cut(s)	114, 155, 772
BsmAI	GTCTC	3 cut(s)	164, 623, 679
BsnI	GGCC	2 cut(s)	15, 1005
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	419, 501, 1142
Bsp143I	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
Bsp1720I	GCTNAGC	1 cut(s)	725
BspACI	CCGC	3 cut(s)	303, 363, 859
BspANI	GGCC	2 cut(s)	15, 1005
BspCNI	CTCAG	1 cut(s)	536
BspFNI	CGCG	2 cut(s)	301, 303
BspPI	GGATC	2 cut(s)	140, 795
BspTI	CTTAAG	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	66, 256, 777
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
Bst2UI	CCWGG	2 cut(s)	12, 205
Bst4CI	ACNGT	3 cut(s)	690, 816, 970
Bst6I	CTCTTC	2 cut(s)	183, 674
BstAFI	CTTAAG	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	986
BstDEI	CTNAG	4 cut(s)	523, 657, 674, 725
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	699, 726, 879, 1111
BstFNI	CGCG	2 cut(s)	301, 303
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	6 cut(s)	148, 276, 574, 790, 879, 892
BstMAI	GTCTC	3 cut(s)	164, 623, 679
BstMBI	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 309, 455, 659
BstNI	CCWGG	2 cut(s)	12, 205
BstSCI	CCNGG	2 cut(s)	10, 203
BstUI	CGCG	2 cut(s)	301, 303
BstV1I	GCAGC	3 cut(s)	302, 662, 665
BstV2I	GAAGAC	2 cut(s)	339, 1017
BsuRI	GGCC	2 cut(s)	15, 1005
BtsCI	GGATG	4 cut(s)	699, 726, 879, 1111
BtsIMutI	CAGTG	4 cut(s)	59, 641, 695, 812
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	886, 1057
CviAII	CATG	2 cut(s)	823, 1101
CviQI	GTAC	2 cut(s)	886, 1057
DdeI	CTNAG	4 cut(s)	523, 657, 674, 725
DpnI	GATC	6 cut(s)	147, 275, 573, 789, 878, 891
DpnII	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	183, 674
EarI	CTCTTC	2 cut(s)	183, 674
Eco31I	GGTCTC	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	306, 362
Eco72I	CACGTG	1 cut(s)	986
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRI	GAATTC	2 cut(s)	370, 669
EcoRII	CCWGG	2 cut(s)	10, 203
EcoT22I	ATGCAT	1 cut(s)	1102
FaeI	CATG	2 cut(s)	826, 1104
FatI	CATG	2 cut(s)	822, 1100
FauI	CCCGC	1 cut(s)	296
FauNDI	CATATG	1 cut(s)	757
FblI	GTMKAC	2 cut(s)	196, 433
Fnu4HI	GCNGC	4 cut(s)	291, 651, 654, 860
FokI	GGATG	4 cut(s)	706, 733, 886, 1118
Fsp4HI	GCNGC	4 cut(s)	291, 651, 654, 860
FspBI	CTAG	3 cut(s)	797, 870, 1001
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	291, 651, 654, 860
GsaI	CCCAGC	3 cut(s)	48, 117, 531
HaeIII	GGCC	2 cut(s)	15, 1005
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	826, 1104
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	521, 809, 826
HphI	GGTGA	1 cut(s)	1085
Hpy166II	GTNNAC	2 cut(s)	197, 434
Hpy188I	TCNGA	3 cut(s)	273, 571, 1148
Hpy188III	TCNNGA	7 cut(s)	237, 261, 478, 534, 896, 973, 995
Hpy8I	GTNNAC	2 cut(s)	197, 434
HpyAV	CCTTC	3 cut(s)	475, 483, 776
HpyCH4III	ACNGT	3 cut(s)	690, 816, 970
HpyCH4IV	ACGT	2 cut(s)	401, 985
HpyCH4V	TGCA	6 cut(s)	59, 72, 152, 324, 650, 1100
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 309, 455, 659
HpyF3I	CTNAG	4 cut(s)	523, 657, 674, 725
HpySE526I	ACGT	2 cut(s)	401, 985
Hsp92II	CATG	2 cut(s)	826, 1104
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
LmnI	GCTCC	5 cut(s)	248, 422, 602, 997, 1137
Lsp1109I	GCAGC	3 cut(s)	302, 662, 665
LweI	GCATC	2 cut(s)	684, 711
MaeI	CTAG	3 cut(s)	797, 870, 1001
MaeII	ACGT	2 cut(s)	401, 985
MalI	GATC	6 cut(s)	147, 275, 573, 789, 878, 891
MboI	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	3 cut(s)	419, 501, 1142
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	7 cut(s)	201, 583, 675, 796, 913, 931, 1063
Mph1103I	ATGCAT	1 cut(s)	1102
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	6 cut(s)	102, 131, 267, 318, 395, 1083
MspA1I	CMGCKG	1 cut(s)	527
MspCI	CTTAAG	1 cut(s)	130
MspR9I	CCNGG	2 cut(s)	12, 205
MssI	GTTTAAAC	1 cut(s)	396
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	12, 205
MvnI	CGCG	2 cut(s)	301, 303
MwoI	GCNNNNNNNGC	4 cut(s)	88, 309, 455, 659
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
NlaIII	CATG	2 cut(s)	826, 1104
NsiI	ATGCAT	1 cut(s)	1102
PcsI	WCGNNNNNNNCGW	1 cut(s)	894
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	809, 826
PkrI	GCNGC	4 cut(s)	292, 652, 655, 861
PleI	GAGTC	1 cut(s)	515
PmaCI	CACGTG	1 cut(s)	986
PmeI	GTTTAAAC	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	515
Ppu21I	YACGTR	1 cut(s)	986
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	10, 203
PspCI	CACGTG	1 cut(s)	986
PspFI	CCCAGC	3 cut(s)	44, 113, 527
PspGI	CCWGG	2 cut(s)	10, 203
PspPI	GGNCC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	887, 1058
RsaNI	GTAC	2 cut(s)	886, 1057
SaqAI	TTAA	6 cut(s)	102, 131, 267, 318, 395, 1083
SatI	GCNGC	4 cut(s)	291, 651, 654, 860
Sau3AI	GATC	6 cut(s)	145, 273, 571, 787, 876, 889
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	12, 205
SduI	GDGCHC	3 cut(s)	419, 501, 1142
SfaNI	GCATC	2 cut(s)	684, 711
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
SsiI	CCGC	3 cut(s)	303, 363, 859
SspMI	CTAG	3 cut(s)	797, 870, 1001
StyD4I	CCNGG	2 cut(s)	10, 203
TaaI	ACNGT	3 cut(s)	690, 816, 970
TaiI	ACGT	2 cut(s)	404, 988
TaqI	TCGA	2 cut(s)	405, 1068
TatI	WGTACW	1 cut(s)	1056
TauI	GCSGC	1 cut(s)	862
TfiI	GAWTC	2 cut(s)	809, 826
Tru1I	TTAA	6 cut(s)	102, 131, 267, 318, 395, 1083
Tru9I	TTAA	6 cut(s)	102, 131, 267, 318, 395, 1083
TscAI	CASTG	4 cut(s)	66, 648, 695, 819
TseI	GCWGC	3 cut(s)	290, 650, 653
TspDTI	ATGAA	4 cut(s)	339, 975, 1122, 1128
TspRI	CASTG	4 cut(s)	66, 648, 695, 819
Vha464I	CTTAAG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	3 cut(s)	164, 370, 669
XmiI	GTMKAC	2 cut(s)	196, 433
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	3 cut(s)	797, 870, 1001
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.