Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Forward (+)

85913882 .. 85916242

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTTTGCGAGTTCAAGAAGCTCCACTTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCAGCTTTGTCGCGCGGGGTTGGCTTCTTTAATTGCAGAACTGCTCTCTTGCTGAAGTCTTCATCATTTCTCTCCACAAGGAATTCTCTACACTACATTGTGGGTTTAAACACGTTCGATGTAAAGTGTTCCCAGAAGCAAAGTAGACAAACTATAACTGCTTCAAAAGCAATTGAGAAGAAAATAATCAAGAAGGTGGGAAGGAATGAGCACCACTTATGGAAGAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAACCTTGTTAGAATTGTTAGTTTCCGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAAGACGAGACAATGGATGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAGCAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATCATAGGCTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCATACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTATGATCATCACGAAATGAAAAATAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCTTTTCAGGAGCTAGGCCAAGAAGACAAGAGCAGACTTGTTTTGAGAAGATATGGGTGTAAATGGAAGTACATTCACTTCGAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGATGAAGATGACATCCTAACCAATTCAAATGGGAGCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

309

Amino Acids

35.68

Weight (kDa)

9.61

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	2 cut(s)	79, 81
AciI	CCGC	2 cut(s)	81, 640
AclWI	GGATC	1 cut(s)	576
AcsI	RAATTY	2 cut(s)	148, 450
AcuI	CTGAAG	2 cut(s)	84, 140
AcvI	CACGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	15, 231, 488, 912
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	6 cut(s)	21, 71, 304, 404, 437, 781
AluI	AGCT	6 cut(s)	21, 71, 304, 404, 437, 781
Alw21I	GWGCWC	2 cut(s)	279, 923
Alw26I	GTCTC	2 cut(s)	404, 460
AlwI	GGATC	1 cut(s)	576
AoxI	GGCC	1 cut(s)	784
ApeKI	GCWGC	3 cut(s)	68, 431, 434
ApoI	RAATTY	2 cut(s)	148, 450
AseI	ATTAAT	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	866
BarI	GAAGNNNNNNTAC	2 cut(s)	830, 862
BbrPI	CACGTG	1 cut(s)	767
BbsI	GAAGAC	3 cut(s)	117, 467, 798
Bbv12I	GWGCWC	2 cut(s)	279, 923
BbvI	GCAGC	3 cut(s)	80, 443, 446
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	2 cut(s)	404, 460
BfaI	CTAG	3 cut(s)	578, 651, 782
BisI	GCNGC	4 cut(s)	69, 432, 435, 641
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	4 cut(s)	70, 433, 436, 642
BmsI	GCATC	2 cut(s)	465, 492
BpiI	GAAGAC	3 cut(s)	117, 467, 798
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	767
BsaBI	GATNNNNATC	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	34, 558
Bse8I	GATNNNNATC	1 cut(s)	567
BseGI	GGATG	5 cut(s)	480, 507, 660, 892, 897
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	34, 558
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	80, 443, 446
BseYI	CCCAGC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	79, 81
BshFI	GGCC	1 cut(s)	786
BsiHKAI	GWGCWC	2 cut(s)	279, 923
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	404, 460
BsnI	GGCC	1 cut(s)	786
Bsp1286I	GDGCHC	2 cut(s)	279, 923
Bsp143I	GATC	5 cut(s)	51, 352, 568, 657, 670
Bsp1720I	GCTNAGC	1 cut(s)	506
BspACI	CCGC	2 cut(s)	81, 640
BspANI	GGCC	1 cut(s)	786
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	79, 81
BspPI	GGATC	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	34, 558
BssMI	GATC	5 cut(s)	51, 352, 568, 657, 670
Bst4CI	ACNGT	2 cut(s)	597, 751
BstBAI	YACGTR	1 cut(s)	767
BstDEI	CTNAG	4 cut(s)	300, 438, 455, 506
BstF5I	GGATG	5 cut(s)	480, 507, 660, 892, 897
BstFNI	CGCG	2 cut(s)	79, 81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	5 cut(s)	54, 355, 571, 660, 673
BstMAI	GTCTC	2 cut(s)	404, 460
BstMBI	GATC	5 cut(s)	51, 352, 568, 657, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 233, 440, 530
BstUI	CGCG	2 cut(s)	79, 81
BstV1I	GCAGC	3 cut(s)	80, 443, 446
BstV2I	GAAGAC	3 cut(s)	117, 467, 798
BsuRI	GGCC	1 cut(s)	786
BtsCI	GGATG	5 cut(s)	480, 507, 660, 892, 897
BtsIMutI	CAGTG	2 cut(s)	422, 593
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	838
CviAII	CATG	2 cut(s)	604, 882
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	4 cut(s)	300, 438, 455, 506
DpnI	GATC	5 cut(s)	53, 354, 570, 659, 672
DpnII	GATC	5 cut(s)	51, 352, 568, 657, 670
DraI	TTTAAA	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	84, 140
Eco72I	CACGTG	1 cut(s)	767
EcoRI	GAATTC	2 cut(s)	148, 450
EcoT22I	ATGCAT	1 cut(s)	883
FaeI	CATG	2 cut(s)	607, 885
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	2 cut(s)	603, 881
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	69, 432, 435, 641
FokI	GGATG	5 cut(s)	487, 514, 667, 884, 899
Fsp4HI	GCNGC	4 cut(s)	69, 432, 435, 641
FspBI	CTAG	3 cut(s)	578, 651, 782
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	69, 432, 435, 641
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	786
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	607, 885
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	298, 590, 607
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	51, 352, 929
Hpy188III	TCNNGA	7 cut(s)	15, 39, 256, 311, 677, 754, 776
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	253, 261, 557
HpyCH4III	ACNGT	2 cut(s)	597, 751
HpyCH4IV	ACGT	2 cut(s)	179, 766
HpyCH4V	TGCA	4 cut(s)	102, 431, 613, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 233, 440, 530
HpyF3I	CTNAG	4 cut(s)	300, 438, 455, 506
HpySE526I	ACGT	2 cut(s)	179, 766
Hsp92II	CATG	2 cut(s)	607, 885
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	51, 352, 568, 657, 670
LmnI	GCTCC	5 cut(s)	26, 383, 521, 778, 918
LpnPI	CCDG	9 cut(s)	24, 47, 212, 290, 296, 539, 739, 750, 761
Lsp1109I	GCAGC	3 cut(s)	80, 443, 446
LweI	GCATC	2 cut(s)	465, 492
MaeI	CTAG	3 cut(s)	578, 651, 782
MaeII	ACGT	2 cut(s)	179, 766
MalI	GATC	5 cut(s)	53, 354, 570, 659, 672
MboI	GATC	5 cut(s)	51, 352, 568, 657, 670
MboII	GAAGA	9 cut(s)	117, 256, 301, 347, 472, 755, 803, 828, 902
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	279, 923
MluCI	AATT	8 cut(s)	42, 97, 148, 237, 338, 450, 483, 907
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	5 cut(s)	364, 577, 694, 712, 844
Mph1103I	ATGCAT	1 cut(s)	883
MseI	TTAA	4 cut(s)	45, 96, 173, 864
MspA1I	CMGCKG	1 cut(s)	304
MssI	GTTTAAAC	1 cut(s)	174
MunI	CAATTG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	79, 81
MwoI	GCNNNNNNNGC	4 cut(s)	87, 233, 440, 530
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	5 cut(s)	51, 352, 568, 657, 670
NlaIII	CATG	2 cut(s)	607, 885
NsiI	ATGCAT	1 cut(s)	883
PfeI	GAWTC	2 cut(s)	590, 607
PkrI	GCNGC	4 cut(s)	70, 433, 436, 642
PleI	GAGTC	1 cut(s)	292
PmaCI	CACGTG	1 cut(s)	767
PmeI	GTTTAAAC	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	767
PshBI	ATTAAT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	767
PspFI	CCCAGC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
SaqAI	TTAA	4 cut(s)	45, 96, 173, 864
SatI	GCNGC	4 cut(s)	69, 432, 435, 641
Sau3AI	GATC	5 cut(s)	51, 352, 568, 657, 670
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	2 cut(s)	279, 923
SfaNI	GCATC	2 cut(s)	465, 492
Sse9I	AATT	8 cut(s)	42, 97, 148, 237, 338, 450, 483, 907
SsiI	CCGC	2 cut(s)	81, 640
SspMI	CTAG	3 cut(s)	578, 651, 782
TaaI	ACNGT	2 cut(s)	597, 751
TaiI	ACGT	2 cut(s)	182, 769
TaqI	TCGA	2 cut(s)	183, 849
TasI	AATT	8 cut(s)	42, 97, 148, 237, 338, 450, 483, 907
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	2 cut(s)	590, 607
Tru1I	TTAA	4 cut(s)	45, 96, 173, 864
Tru9I	TTAA	4 cut(s)	45, 96, 173, 864
TscAI	CASTG	2 cut(s)	429, 600
TseI	GCWGC	3 cut(s)	68, 431, 434
TspDTI	ATGAA	4 cut(s)	117, 698, 756, 903
TspRI	CASTG	2 cut(s)	429, 600
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	2 cut(s)	148, 450
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	3 cut(s)	578, 651, 782
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.