Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Reverse (-)

3513355 .. 3517198

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G071600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTTGTGAGTTCCGGAAATTCTACTTCTTGTCAGTTCCCCTTACCAGGAATTGATCAGATGAAAACAACTGAAGCAGCTTTGTCATTGGGGTTTGGCTTTTCTAATTGTAGAACTTCTCTCTTGTGGAAGAGAAATTCTCTACATCACACGGTGTCTATAAATGCATTCAATGTCAAGTGCTCCTTCAAGCAAAGTAGACAACCTCTAACCAGTCCAAAAGCAATTGAGAAGAAAACAATCAAGAAGGTGGGAAGGAAAGAGCACCACTTATGGCAGAAAAGAGACTCGGCTGGGTCTGGGCAAAAGGCACTCAATCTCGTCAGAATTGTCTCCGGTCTTCCTAATGAGAAAGAGACAGTTTATGGAGCATTAGATAAATGGACAGCTTGGGAGACTGAGTTTCCATTGATTGCAGCTGTTAAGGCCTTGAGAATCCTAAGGAAGAGGAGTCAATGGGTGCGTGTAATTCAGGTGGCAAAGTGGATGTTGAGCAAAGGCCAAGGAGCAACAATGGGAACATATGACACCCTTCTGCTGGCATTTGATATGGATCAGAGGGTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCACACGCATACACGCTCTATCTCAAAGCGGCTGTTTTCTAGGATGATATCTTTGTATGATCATCATGACAAGCAAAATAAGATAATAGAGGTATTTGCAGACATGGAGGAGCTGGGTGTAAAACCAGATGAAGATACTGTCAGGAGGGTGGCACGTGCTTTTAAGGAACTAGGCCAAGAAGAGAACAAAACACTTGTTTTAAGAAGATACCAGTGTAAATGGAAGTACATTCACTTTAAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGACGAAGACGACAACTTAAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

299

Amino Acids

34.39

Weight (kDa)

9.73

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	1 cut(s)	625
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	19, 136
AcuI	CTGAAG	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	752
AdeI	CACNNNGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	824
AfiI	CCNNNNNNNGG	2 cut(s)	47, 538
AflII	CTTAAG	1 cut(s)	886
AgsI	TTSAA	2 cut(s)	172, 190
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	4 cut(s)	80, 389, 419, 709
AluI	AGCT	4 cut(s)	80, 389, 419, 709
Alw21I	GWGCWC	2 cut(s)	185, 267
Alw26I	GTCTC	4 cut(s)	279, 337, 350, 389
AlwI	GGATC	1 cut(s)	561
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	3 cut(s)	426, 499, 769
ApeKI	GCWGC	2 cut(s)	77, 416
ApoI	RAATTY	2 cut(s)	19, 136
AsuHPI	GGTGA	1 cut(s)	851
AxyI	CCTNAGG	1 cut(s)	440
BaeI	ACNNNNGTAYC	2 cut(s)	796, 829
BbrPI	CACGTG	1 cut(s)	752
BbsI	GAAGAC	2 cut(s)	332, 882
Bbv12I	GWGCWC	2 cut(s)	185, 267
BbvI	GCAGC	2 cut(s)	89, 428
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	2 cut(s)	55, 655
BcoDI	GTCTC	4 cut(s)	279, 337, 350, 389
BfaI	CTAG	2 cut(s)	636, 767
BfrI	CTTAAG	1 cut(s)	886
BisI	GCNGC	3 cut(s)	78, 417, 626
BlsI	GCNGC	3 cut(s)	79, 418, 627
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BpiI	GAAGAC	2 cut(s)	332, 882
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpuEI	CTTGAG	1 cut(s)	451
BsaAI	YACGTR	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	502
BsaWI	WCCGGW	2 cut(s)	14, 335
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 538
Bse1I	ACTGG	2 cut(s)	213, 808
Bse21I	CCTNAGG	1 cut(s)	440
Bse8I	GATNNNNATC	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	2 cut(s)	492, 645
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	47, 538
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	213, 808
BseRI	GAGGAG	2 cut(s)	463, 719
BseXI	GCAGC	2 cut(s)	89, 428
BseYI	CCCAGC	2 cut(s)	293, 709
BsgI	GTGCAG	1 cut(s)	581
BshFI	GGCC	3 cut(s)	428, 501, 771
BsiHKAI	GWGCWC	2 cut(s)	185, 267
BsiSI	CCGG	2 cut(s)	15, 336
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	47, 538
BsmAI	GTCTC	4 cut(s)	279, 337, 350, 389
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	3 cut(s)	428, 501, 771
Bsp1286I	GDGCHC	2 cut(s)	185, 267
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	55, 553, 655
BspACI	CCGC	1 cut(s)	625
BspANI	GGCC	3 cut(s)	428, 501, 771
BspCNI	CTCAG	1 cut(s)	391
BspEI	TCCGGA	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	661
BspPI	GGATC	1 cut(s)	561
BspTI	CTTAAG	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	213, 808
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	3 cut(s)	55, 553, 655
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	4 cut(s)	154, 361, 582, 736
Bst6I	CTCTTC	3 cut(s)	125, 440, 771
BstAFI	CTTAAG	1 cut(s)	886
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	2 cut(s)	399, 440
BstF5I	GGATG	2 cut(s)	492, 645
BstKTI	GATC	3 cut(s)	58, 556, 658
BstMAI	GTCTC	4 cut(s)	279, 337, 350, 389
BstMBI	GATC	3 cut(s)	55, 553, 655
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	89, 428
BstV2I	GAAGAC	2 cut(s)	332, 882
Bsu36I	CCTNAGG	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	428, 501, 771
BtsCI	GGATG	2 cut(s)	492, 645
BtsIMutI	CAGTG	2 cut(s)	578, 815
Cac8I	GCNNGC	1 cut(s)	540
CciI	TCATGA	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	823
CviAII	CATG	4 cut(s)	589, 662, 700, 867
CviQI	GTAC	1 cut(s)	823
DdeI	CTNAG	2 cut(s)	399, 440
DpnI	GATC	3 cut(s)	57, 555, 657
DpnII	GATC	3 cut(s)	55, 553, 655
DraIII	CACNNNGTG	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	125, 440, 771
EarI	CTCTTC	3 cut(s)	125, 440, 771
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	428
Eco32I	GATATC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	752
Eco81I	CCTNAGG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	2 cut(s)	169, 868
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	4 cut(s)	592, 665, 703, 870
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	4 cut(s)	588, 661, 699, 866
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	2 cut(s)	55, 655
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	78, 417, 626
FokI	GGATG	2 cut(s)	499, 652
Fsp4HI	GCNGC	3 cut(s)	78, 417, 626
FspBI	CTAG	2 cut(s)	636, 767
GluI	GCNGC	3 cut(s)	78, 417, 626
GsaI	CCCAGC	2 cut(s)	297, 713
HaeIII	GGCC	3 cut(s)	428, 501, 771
HapII	CCGG	2 cut(s)	15, 336
Hin1II	CATG	4 cut(s)	592, 665, 703, 870
HinfI	GANTC	5 cut(s)	287, 435, 451, 575, 592
HpaII	CCGG	2 cut(s)	15, 336
HphI	GGTGA	1 cut(s)	851
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	3 cut(s)	60, 326, 558
Hpy188III	TCNNGA	4 cut(s)	15, 244, 662, 739
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	196, 241, 249, 542
HpyCH4III	ACNGT	4 cut(s)	154, 361, 582, 736
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	5 cut(s)	167, 416, 598, 695, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	2 cut(s)	399, 440
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	4 cut(s)	592, 665, 703, 870
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	2 cut(s)	55, 655
Kzo9I	GATC	3 cut(s)	55, 553, 655
LmnI	GCTCC	4 cut(s)	188, 368, 506, 706
Lsp1109I	GCAGC	2 cut(s)	89, 428
MaeI	CTAG	2 cut(s)	636, 767
MaeII	ACGT	1 cut(s)	751
MalI	GATC	3 cut(s)	57, 555, 657
MboI	GATC	3 cut(s)	55, 553, 655
MboII	GAAGA	8 cut(s)	142, 244, 332, 457, 740, 788, 813, 887
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	185, 267
MluCI	AATT	7 cut(s)	19, 51, 106, 136, 225, 327, 468
MlyI	GAGTC	2 cut(s)	281, 460
MnlI	CCTC	7 cut(s)	216, 441, 552, 562, 679, 697, 735
Mph1103I	ATGCAT	2 cut(s)	169, 868
MroI	TCCGGA	1 cut(s)	14
MseI	TTAA	6 cut(s)	423, 759, 797, 834, 849, 887
MspA1I	CMGCKG	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	2 cut(s)	15, 336
MspR9I	CCNGG	1 cut(s)	48
MunI	CAATTG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	3 cut(s)	55, 553, 655
NlaIII	CATG	4 cut(s)	592, 665, 703, 870
NmeAIII	GCCGAG	1 cut(s)	269
NsiI	ATGCAT	2 cut(s)	169, 868
PagI	TCATGA	1 cut(s)	661
PceI	AGGCCT	1 cut(s)	428
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	435, 575, 592
PkrI	GCNGC	3 cut(s)	79, 418, 627
PleI	GAGTC	2 cut(s)	281, 459
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
PpsI	GAGTC	2 cut(s)	281, 459
Ppu21I	YACGTR	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	46
PspCI	CACGTG	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	293, 709
PspGI	CCWGG	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	824
RsaNI	GTAC	1 cut(s)	823
SaqAI	TTAA	6 cut(s)	423, 759, 797, 834, 849, 887
SatI	GCNGC	3 cut(s)	78, 417, 626
Sau3AI	GATC	3 cut(s)	55, 553, 655
SchI	GAGTC	2 cut(s)	281, 460
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	185, 267
SetI	ASST	9 cut(s)	82, 208, 252, 391, 421, 477, 690, 711, 754
SmlI	CTYRAG	2 cut(s)	430, 886
SmoI	CTYRAG	2 cut(s)	430, 886
Sse9I	AATT	7 cut(s)	19, 51, 106, 136, 225, 327, 468
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	1 cut(s)	625
SspMI	CTAG	2 cut(s)	636, 767
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	154, 361, 582, 736
TaiI	ACGT	1 cut(s)	754
TasI	AATT	7 cut(s)	19, 51, 106, 136, 225, 327, 468
TatI	WGTACW	1 cut(s)	822
TauI	GCSGC	1 cut(s)	628
TfiI	GAWTC	3 cut(s)	435, 575, 592
Tru1I	TTAA	6 cut(s)	423, 759, 797, 834, 849, 887
Tru9I	TTAA	6 cut(s)	423, 759, 797, 834, 849, 887
TscAI	CASTG	2 cut(s)	585, 815
TseI	GCWGC	2 cut(s)	77, 416
TspDTI	ATGAA	2 cut(s)	77, 741
TspRI	CASTG	2 cut(s)	585, 815
Vha464I	CTTAAG	1 cut(s)	886
XapI	RAATTY	2 cut(s)	19, 136
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	2 cut(s)	636, 767
Zsp2I	ATGCAT	2 cut(s)	169, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.