Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Forward (+)

30685104 .. 30689801

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAACTTTGGAAGCTCCATTTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCTGCTTTGTCACGCACGGTCGGCTTGTCAAATTCCAGAACTGCTCTCTCGCTGAAGTCTTCCTCATTTCTCTGCGTAAGGAATTCTTTACGTTATGTTGTGGGTTTAAACATGTTCGATCTGAAGTGCTGCCAGAAGCAAAGTAGACAAACTGTAATGGCTTCAAAAGCAATGGAGAAGAAAATAATCAAGAAGGCGGGAAGGAATGAGCACCACTTATGGAAGAAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAATCTTATTAGAATTGTATCTGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAGGACTTGTCAGTGGAGGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAGCAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATAATAGGCTAGATGAGGCTGAATCACTTTGGAACATGATTCTGCATACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTATGATCATCATGAAATGAAAACTAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCATTTCAGGAGTTTGGTCAAGAAGACAAGAGCAAACTTGTTTTGAGAAGATATGGGTGTAAATGGAAGTACATTCACTTCAAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGTTGAAGATGACATCCTAACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

301

Amino Acids

34.55

Weight (kDa)

9.72

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	2 cut(s)	257, 631
AcsI	RAATTY	3 cut(s)	91, 142, 441
AcuI	CTGAAG	3 cut(s)	78, 134, 203
AcvI	CACGTG	1 cut(s)	758
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	225, 479, 841, 881
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	15, 62, 299, 395, 428
AluI	AGCT	5 cut(s)	15, 62, 299, 395, 428
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	395
ApeKI	GCWGC	4 cut(s)	62, 189, 422, 425
ApoI	RAATTY	3 cut(s)	91, 142, 441
AseI	ATTAAT	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	857
BarI	GAAGNNNNNNTAC	4 cut(s)	330, 362, 821, 853
BbrPI	CACGTG	1 cut(s)	758
BbsI	GAAGAC	2 cut(s)	111, 789
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	49, 176, 434, 437
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	2 cut(s)	569, 642
BisI	GCNGC	5 cut(s)	63, 190, 423, 426, 632
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	5 cut(s)	64, 191, 424, 427, 633
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	111, 789
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	758
BsaXI	ACNNNNNCTCC	4 cut(s)	392, 422, 442, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	2 cut(s)	28, 549
Bse3DI	GCAATG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	498, 651, 888
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	28, 549
BseRI	GAGGAG	1 cut(s)	725
BseXI	GCAGC	4 cut(s)	49, 176, 434, 437
BseYI	CCCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	81
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	45, 178, 343, 648, 661
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	2 cut(s)	257, 631
BspCNI	CTCAG	1 cut(s)	308
BspHI	TCATGA	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	28, 549
BssMI	GATC	5 cut(s)	45, 178, 343, 648, 661
Bst4CI	ACNGT	3 cut(s)	79, 214, 742
BstBAI	YACGTR	1 cut(s)	758
BstDEI	CTNAG	5 cut(s)	295, 429, 446, 497, 681
BstF5I	GGATG	3 cut(s)	498, 651, 888
BstKTI	GATC	5 cut(s)	48, 181, 346, 651, 664
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	5 cut(s)	45, 178, 343, 648, 661
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 227, 431, 521
BstNSI	RCATGY	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	49, 176, 434, 437
BstV2I	GAAGAC	2 cut(s)	111, 789
BtsCI	GGATG	3 cut(s)	498, 651, 888
BtsIMutI	CAGTG	2 cut(s)	413, 467
CciI	TCATGA	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	4 cut(s)	172, 595, 668, 873
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	5 cut(s)	295, 429, 446, 497, 681
DpnI	GATC	5 cut(s)	47, 180, 345, 650, 663
DpnII	GATC	5 cut(s)	45, 178, 343, 648, 661
DraI	TTTAAA	1 cut(s)	168
Eco57I	CTGAAG	3 cut(s)	78, 134, 203
Eco72I	CACGTG	1 cut(s)	758
EcoRI	GAATTC	2 cut(s)	142, 441
EcoT22I	ATGCAT	1 cut(s)	874
FaeI	CATG	4 cut(s)	175, 598, 671, 876
FalI	AAGNNNNNCTT	4 cut(s)	130, 162, 439, 471
FatI	CATG	4 cut(s)	171, 594, 667, 872
FauI	CCCGC	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	63, 190, 423, 426, 632
FokI	GGATG	3 cut(s)	505, 658, 875
Fsp4HI	GCNGC	5 cut(s)	63, 190, 423, 426, 632
FspBI	CTAG	2 cut(s)	569, 642
GluI	GCNGC	5 cut(s)	63, 190, 423, 426, 632
GsaI	CCCAGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	175, 598, 671, 876
HinfI	GANTC	3 cut(s)	293, 581, 598
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	45, 183, 343
Hpy188III	TCNNGA	8 cut(s)	33, 96, 250, 306, 668, 745, 767, 779
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	247, 255, 548
HpyCH4III	ACNGT	3 cut(s)	79, 214, 742
HpyCH4IV	ACGT	2 cut(s)	151, 757
HpyCH4V	TGCA	4 cut(s)	422, 604, 761, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 227, 431, 521
HpyF3I	CTNAG	5 cut(s)	295, 429, 446, 497, 681
HpySE526I	ACGT	2 cut(s)	151, 757
Hsp92II	CATG	4 cut(s)	175, 598, 671, 876
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	45, 178, 343, 648, 661
LmnI	GCTCC	3 cut(s)	20, 374, 512
Lsp1109I	GCAGC	4 cut(s)	49, 176, 434, 437
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	569, 642
MaeII	ACGT	2 cut(s)	151, 757
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	5 cut(s)	47, 180, 345, 650, 663
MboI	GATC	5 cut(s)	45, 178, 343, 648, 661
MboII	GAAGA	8 cut(s)	111, 250, 295, 338, 746, 794, 819, 893
MfeI	CAATTG	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	7 cut(s)	36, 91, 142, 333, 441, 474, 898
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	7 cut(s)	133, 355, 444, 459, 568, 685, 703
Mph1103I	ATGCAT	1 cut(s)	874
MseI	TTAA	3 cut(s)	39, 167, 855
MspA1I	CMGCKG	1 cut(s)	299
MssI	GTTTAAAC	1 cut(s)	168
MunI	CAATTG	1 cut(s)	898
MwoI	GCNNNNNNNGC	4 cut(s)	81, 227, 431, 521
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	5 cut(s)	45, 178, 343, 648, 661
NlaIII	CATG	4 cut(s)	175, 598, 671, 876
NmuCI	GTSAC	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	874
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	1 cut(s)	667
PciI	ACATGT	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	581, 598
PkrI	GCNGC	5 cut(s)	64, 191, 424, 427, 633
PleI	GAGTC	1 cut(s)	287
PmaCI	CACGTG	1 cut(s)	758
PmeI	GTTTAAAC	1 cut(s)	168
PmlI	CACGTG	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	758
PscI	ACATGT	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SaqAI	TTAA	3 cut(s)	39, 167, 855
SatI	GCNGC	5 cut(s)	63, 190, 423, 426, 632
Sau3AI	GATC	5 cut(s)	45, 178, 343, 648, 661
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	9 cut(s)	17, 64, 154, 301, 397, 430, 508, 696, 760
SfaNI	GCATC	1 cut(s)	483
Sse9I	AATT	7 cut(s)	36, 91, 142, 333, 441, 474, 898
SsiI	CCGC	2 cut(s)	257, 631
SspMI	CTAG	2 cut(s)	569, 642
TaaI	ACNGT	3 cut(s)	79, 214, 742
TaiI	ACGT	2 cut(s)	154, 760
TaqI	TCGA	1 cut(s)	177
TasI	AATT	7 cut(s)	36, 91, 142, 333, 441, 474, 898
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	2 cut(s)	581, 598
Tru1I	TTAA	3 cut(s)	39, 167, 855
Tru9I	TTAA	3 cut(s)	39, 167, 855
TscAI	CASTG	2 cut(s)	420, 467
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	4 cut(s)	62, 189, 422, 425
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	4 cut(s)	17, 684, 689, 747
TspRI	CASTG	2 cut(s)	420, 467
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	3 cut(s)	91, 142, 441
XceI	RCATGY	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	2 cut(s)	569, 642
Zsp2I	ATGCAT	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.