Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Reverse (-)

8312950 .. 8318844

Gene Structure 5895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG092900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCTTTCAACACTTAAAACCCAAGCTGGGTTTTTCAAAACCTTAAGTTATCGTTGTGATCCTGCAAAAGGTCTCAAATTGTCTCATACTCTTCAATACAATCCTCGTAGACATTCCTGGTTTTTGTCAAGTATAATGTTTGTGAGTTCTGGAAGCTCCATTTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCAGCTTTGTCGCACGGGGTTGGCTTCTTTAATTGCAGAACTGCTCTCTTGCTGAAGTCTTCATCATTTCTCTCCGCAAGGAATTCTCTACACTACATTGTTGGTTTAAACACGTTCGATGTAAAGTGCTCCCAGAAGCAAAGTAGACAAACTATAACTGCTTCAAAAGCAATTGAGAAGAAAATAATCAAGAAGGTGGGAAGGAATGAGCACCACTTATGGAAGAAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAACCTTGTTAGAATTGTTTCCGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAAGAGGAGACAGTGGATGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAGCAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATCATAGGCTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCATACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTATGATCATCACGAAATGAAAAATAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCTTTTCAGGAGCTAGGCCAAGAAGACAAGAGCAAACTTGTTTTGAGAAGATATGGGTGTAAATGGAAGTACATTCACTTCGAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGATGAAGATGACATCGTAACCAATTCAAATGGGAGCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

353

Amino Acids

40.49

Weight (kDa)

9.75

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	109, 346
AciI	CCGC	2 cut(s)	276, 772
AclWI	GGATC	2 cut(s)	53, 708
AcsI	RAATTY	2 cut(s)	283, 582
AcuI	CTGAAG	2 cut(s)	219, 275
AcvI	CACGTG	1 cut(s)	899
AfaI	GTAC	1 cut(s)	971
AfiI	CCNNNNNNNGG	3 cut(s)	27, 68, 685
AflII	CTTAAG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	6 cut(s)	9, 37, 95, 366, 620, 1044
AjnI	CCWGG	1 cut(s)	116
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
AluBI	AGCT	7 cut(s)	26, 156, 206, 440, 536, 569, 913
AluI	AGCT	7 cut(s)	26, 156, 206, 440, 536, 569, 913
Alw21I	GWGCWC	3 cut(s)	332, 414, 1055
Alw26I	GTCTC	4 cut(s)	77, 87, 536, 592
AlwI	GGATC	2 cut(s)	53, 708
AoxI	GGCC	1 cut(s)	916
ApeKI	GCWGC	3 cut(s)	203, 563, 566
ApoI	RAATTY	2 cut(s)	283, 582
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	998
BarI	GAAGNNNNNNTAC	2 cut(s)	962, 994
BbrPI	CACGTG	1 cut(s)	899
BbsI	GAAGAC	2 cut(s)	252, 930
Bbv12I	GWGCWC	3 cut(s)	332, 414, 1055
BbvI	GCAGC	3 cut(s)	215, 575, 578
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	1 cut(s)	802
BcoDI	GTCTC	4 cut(s)	77, 87, 536, 592
BfaI	CTAG	3 cut(s)	710, 783, 914
BfrI	CTTAAG	1 cut(s)	43
BisI	GCNGC	4 cut(s)	204, 564, 567, 773
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	4 cut(s)	205, 565, 568, 774
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	597, 624
BpiI	GAAGAC	2 cut(s)	252, 930
Bpu10I	CCTNAGC	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 68, 685
Bse1I	ACTGG	2 cut(s)	169, 690
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	4 cut(s)	612, 639, 792, 1024
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	3 cut(s)	27, 68, 685
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	169, 690
BseRI	GAGGAG	2 cut(s)	610, 866
BseXI	GCAGC	3 cut(s)	215, 575, 578
BseYI	CCCAGC	2 cut(s)	26, 440
BshFI	GGCC	1 cut(s)	918
BsiHKAI	GWGCWC	3 cut(s)	332, 414, 1055
BslI	CCNNNNNNNGG	3 cut(s)	27, 68, 685
BsmAI	GTCTC	4 cut(s)	77, 87, 536, 592
BsnI	GGCC	1 cut(s)	918
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	332, 414, 1055
Bsp143I	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
Bsp1720I	GCTNAGC	1 cut(s)	638
BspACI	CCGC	2 cut(s)	276, 772
BspANI	GGCC	1 cut(s)	918
BspCNI	CTCAG	1 cut(s)	449
BspPI	GGATC	2 cut(s)	53, 708
BspTI	CTTAAG	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	169, 690
BssMI	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	603, 729, 883
Bst6I	CTCTTC	2 cut(s)	96, 587
BstAFI	CTTAAG	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	899
BstDEI	CTNAG	4 cut(s)	436, 570, 587, 638
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstF5I	GGATG	4 cut(s)	612, 639, 792, 1024
BstKTI	GATC	6 cut(s)	61, 189, 487, 703, 792, 805
BstMAI	GTCTC	4 cut(s)	77, 87, 536, 592
BstMBI	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 572, 662
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	215, 575, 578
BstV2I	GAAGAC	2 cut(s)	252, 930
BsuRI	GGCC	1 cut(s)	918
BtsCI	GGATG	4 cut(s)	612, 639, 792, 1024
BtsIMutI	CAGTG	3 cut(s)	554, 608, 725
Csp6I	GTAC	1 cut(s)	970
CviAII	CATG	2 cut(s)	736, 1014
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	4 cut(s)	436, 570, 587, 638
DpnI	GATC	6 cut(s)	60, 188, 486, 702, 791, 804
DpnII	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	96, 587
EarI	CTCTTC	2 cut(s)	96, 587
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	219, 275
Eco72I	CACGTG	1 cut(s)	899
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoRI	GAATTC	2 cut(s)	283, 582
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	1015
FaeI	CATG	2 cut(s)	739, 1017
FatI	CATG	2 cut(s)	735, 1013
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	2 cut(s)	109, 346
Fnu4HI	GCNGC	4 cut(s)	204, 564, 567, 773
FokI	GGATG	4 cut(s)	619, 646, 799, 1031
Fsp4HI	GCNGC	4 cut(s)	204, 564, 567, 773
FspBI	CTAG	3 cut(s)	710, 783, 914
GluI	GCNGC	4 cut(s)	204, 564, 567, 773
GsaI	CCCAGC	2 cut(s)	30, 444
HaeIII	GGCC	1 cut(s)	918
Hin1II	CATG	2 cut(s)	739, 1017
HinfI	GANTC	3 cut(s)	434, 722, 739
HphI	GGTGA	1 cut(s)	998
Hpy166II	GTNNAC	2 cut(s)	110, 347
Hpy188I	TCNGA	3 cut(s)	186, 484, 1061
Hpy188III	TCNNGA	7 cut(s)	150, 174, 391, 447, 809, 886, 908
Hpy8I	GTNNAC	2 cut(s)	110, 347
HpyAV	CCTTC	3 cut(s)	388, 396, 689
HpyCH4III	ACNGT	3 cut(s)	603, 729, 883
HpyCH4IV	ACGT	2 cut(s)	314, 898
HpyCH4V	TGCA	5 cut(s)	65, 237, 563, 745, 1013
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 572, 662
HpyF3I	CTNAG	4 cut(s)	436, 570, 587, 638
HpySE526I	ACGT	2 cut(s)	314, 898
Hsp92II	CATG	2 cut(s)	739, 1017
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
LmnI	GCTCC	6 cut(s)	161, 335, 515, 653, 910, 1050
Lsp1109I	GCAGC	3 cut(s)	215, 575, 578
LweI	GCATC	2 cut(s)	597, 624
MaeI	CTAG	3 cut(s)	710, 783, 914
MaeII	ACGT	2 cut(s)	314, 898
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	6 cut(s)	60, 188, 486, 702, 791, 804
MboI	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	3 cut(s)	332, 414, 1055
MluCI	AATT	9 cut(s)	77, 177, 232, 283, 372, 474, 582, 615, 1039
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	114, 496, 588, 709, 826, 844, 976
Mph1103I	ATGCAT	1 cut(s)	1015
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	6 cut(s)	15, 44, 180, 231, 308, 996
MspA1I	CMGCKG	1 cut(s)	440
MspCI	CTTAAG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	118
MssI	GTTTAAAC	1 cut(s)	309
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	368, 572, 662
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
NlaIII	CATG	2 cut(s)	739, 1017
NsiI	ATGCAT	1 cut(s)	1015
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	722, 739
PkrI	GCNGC	4 cut(s)	205, 565, 568, 774
PleI	GAGTC	1 cut(s)	428
PmaCI	CACGTG	1 cut(s)	899
PmeI	GTTTAAAC	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	1 cut(s)	899
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	899
PspFI	CCCAGC	2 cut(s)	26, 440
PspGI	CCWGG	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
SaqAI	TTAA	6 cut(s)	15, 44, 180, 231, 308, 996
SatI	GCNGC	4 cut(s)	204, 564, 567, 773
Sau3AI	GATC	6 cut(s)	58, 186, 484, 700, 789, 802
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	3 cut(s)	332, 414, 1055
SfaNI	GCATC	2 cut(s)	597, 624
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	9 cut(s)	77, 177, 232, 283, 372, 474, 582, 615, 1039
SsiI	CCGC	2 cut(s)	276, 772
SspMI	CTAG	3 cut(s)	710, 783, 914
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	603, 729, 883
TaiI	ACGT	2 cut(s)	317, 901
TaqI	TCGA	2 cut(s)	318, 981
TasI	AATT	9 cut(s)	77, 177, 232, 283, 372, 474, 582, 615, 1039
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	722, 739
Tru1I	TTAA	6 cut(s)	15, 44, 180, 231, 308, 996
Tru9I	TTAA	6 cut(s)	15, 44, 180, 231, 308, 996
TscAI	CASTG	3 cut(s)	561, 608, 732
TseI	GCWGC	3 cut(s)	203, 563, 566
TspDTI	ATGAA	4 cut(s)	252, 830, 888, 1035
TspRI	CASTG	3 cut(s)	561, 608, 732
Vha464I	CTTAAG	1 cut(s)	43
VspI	ATTAAT	1 cut(s)	180
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	2 cut(s)	283, 582
XmiI	GTMKAC	2 cut(s)	109, 346
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	3 cut(s)	710, 783, 914
Zsp2I	ATGCAT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.