Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Forward (+)

19607320 .. 19610311

Gene Structure 2992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1093300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTTTTGAATTCCGGATATTGTATTCGATGTCAGTTCCCCTTATTAGGAATTGATCAGATGAAAACAGGTGAAGCAGCTTTATCATCGGGGTTCAGCTTCTCTAATTGCAGAACTAGAACTAGTCTCTTGTGGAAGAGAAATTCGCTACATCACGCGGTGGCTCCAAGTCCATTCAATATCAAGTGCTCCTACAAGCAAAGTAGAAAGCCTCTAACTAGTTCAAAACCGGTTGAGAAGAAAATAATCAAGAAGGCGGGAAAGAAAGAGCACCACTTATGGCAAAGAAAAGATTCGGCCGGGTCTGGGCAAAAGGCACTCAATCTCGTTAGAATTGTTTCGGGTCTTCCTAATGAGAAAGAGACCTTTTTTGGAGCATTAGATAAATGGACAGCTTGGGAGACAGAGTTCCCATTGATTGCAGCAGCTAAGGCCTTGATAATCCTAAGGAAGAGGAGTCAATGGGTGCACGTAATTCAGGTGGCAAAGTGGATGCTGAGCAGAGGCCAAGGAGCAACAATGGGAACGTATGACACCCTATTGCTGGCATTTGATATGGATCAGAGGGTAGATGAGGCTGAATCATTGTGGAACATGATTCTGCACACGCATACACGCTCCATCTCTAGGCGGCTGTTTTCTAGGATGATCTCTTTGTATCATCATCACGACATGCAAAGCAAGATAATAGAGGTATTCGCAGACATGGAGGAACTGGGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGCGCTTTTCAGGAACTAGGGCAAGAAGAGAACAAAAAACTTTTCTTAAGAAGATATCAGTGTAAGTGGAAGTACATTCACTTTAAGGGTGAAAGAGTTAAAGTGAGGAGAACTAATGCATGGAATGGAGATGACAACTTAGGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

302

Amino Acids

34.88

Weight (kDa)

9.91

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	158, 759
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	3 cut(s)	158, 257, 631
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	10, 142
AdeI	CACNNNGTG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	4 cut(s)	47, 306, 544, 627
AflII	CTTAAG	1 cut(s)	802
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	10, 178, 225
AhlI	ACTAGT	2 cut(s)	122, 218
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	80, 99, 395, 428
AluI	AGCT	4 cut(s)	80, 99, 395, 428
Alw21I	GWGCWC	3 cut(s)	191, 273, 471
Alw26I	GTCTC	3 cut(s)	131, 356, 395
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	3 cut(s)	297, 432, 505
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	77, 422, 425
ApoI	RAATTY	2 cut(s)	10, 142
AsiGI	ACCGGT	1 cut(s)	229
Asp700I	GAANNNNTTC	2 cut(s)	292, 337
AspLEI	GCGC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	83, 857
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	471
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	3 cut(s)	191, 273, 471
BbvI	GCAGC	3 cut(s)	89, 434, 437
BccI	CCATC	1 cut(s)	629
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	131, 356, 395
BcuI	ACTAGT	2 cut(s)	122, 218
BfaI	CTAG	6 cut(s)	117, 123, 219, 627, 642, 773
BfrI	CTTAAG	1 cut(s)	802
BisI	GCNGC	4 cut(s)	78, 423, 426, 632
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	4 cut(s)	79, 424, 427, 633
Bme1390I	CCNGG	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	558
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	2 cut(s)	14, 229
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 306, 544, 627
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	720
Bse21I	CCTNAGG	1 cut(s)	446
Bse8I	GATNNNNATC	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	2 cut(s)	498, 651
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	4 cut(s)	47, 306, 544, 627
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	2 cut(s)	469, 877
BseSI	GKGCMC	1 cut(s)	471
BseX3I	CGGCCG	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	89, 434, 437
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	2 cut(s)	158, 759
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	3 cut(s)	299, 434, 507
BshTI	ACCGGT	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	3 cut(s)	191, 273, 471
BsiSI	CCGG	3 cut(s)	15, 230, 300
BslI	CCNNNNNNNGG	4 cut(s)	47, 306, 544, 627
BsmAI	GTCTC	3 cut(s)	131, 356, 395
BsnI	GGCC	3 cut(s)	299, 434, 507
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	191, 273, 471
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	55, 559, 648
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	3 cut(s)	158, 257, 631
BspANI	GGCC	3 cut(s)	299, 434, 507
BspCNI	CTCAG	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	14
BspFNI	CGCG	2 cut(s)	158, 759
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	567
BspTI	CTTAAG	1 cut(s)	802
BspTNI	GGTCTC	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	720
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	3 cut(s)	55, 559, 648
BssT1I	CCWWGG	1 cut(s)	508
Bst4CI	ACNGT	1 cut(s)	742
Bst6I	CTCTTC	3 cut(s)	131, 446, 777
BstAFI	CTTAAG	1 cut(s)	802
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	546, 757
BstDEI	CTNAG	4 cut(s)	429, 446, 497, 895
BstF5I	GGATG	2 cut(s)	498, 651
BstFNI	CGCG	2 cut(s)	158, 759
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	3 cut(s)	58, 562, 651
BstMAI	GTCTC	3 cut(s)	131, 356, 395
BstMBI	GATC	3 cut(s)	55, 559, 648
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	676
BstSCI	CCNGG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	2 cut(s)	158, 759
BstV1I	GCAGC	3 cut(s)	89, 434, 437
BstV2I	GAAGAC	1 cut(s)	338
BstZI	CGGCCG	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	3 cut(s)	299, 434, 507
BtsCI	GGATG	2 cut(s)	498, 651
BtsIMutI	CAGTG	1 cut(s)	821
Cac8I	GCNNGC	2 cut(s)	546, 757
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	829
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	4 cut(s)	595, 673, 706, 876
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	4 cut(s)	429, 446, 497, 895
DpnI	GATC	3 cut(s)	57, 561, 650
DpnII	GATC	3 cut(s)	55, 559, 648
DraIII	CACNNNGTG	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	297
EagI	CGGCCG	1 cut(s)	297
Eam1104I	CTCTTC	3 cut(s)	131, 446, 777
EarI	CTCTTC	3 cut(s)	131, 446, 777
EclXI	CGGCCG	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	812
Eco52I	CGGCCG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	508
EcoT22I	ATGCAT	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	4 cut(s)	598, 676, 709, 879
FaiI	YATR	8 cut(s)	280, 531, 557, 596, 612, 674, 707, 877
FatI	CATG	4 cut(s)	594, 672, 705, 875
FauI	CCCGC	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	78, 423, 426, 632
FokI	GGATG	2 cut(s)	505, 658
Fsp4HI	GCNGC	4 cut(s)	78, 423, 426, 632
FspBI	CTAG	6 cut(s)	117, 123, 219, 627, 642, 773
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	78, 423, 426, 632
HaeIII	GGCC	3 cut(s)	299, 434, 507
HapII	CCGG	3 cut(s)	15, 230, 300
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	598, 676, 709, 879
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	4 cut(s)	293, 457, 581, 598
HpaII	CCGG	3 cut(s)	15, 230, 300
HphI	GGTGA	2 cut(s)	83, 857
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	2 cut(s)	60, 564
Hpy188III	TCNNGA	5 cut(s)	15, 250, 668, 745, 767
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	742
HpyCH4IV	ACGT	2 cut(s)	471, 527
HpyCH4V	TGCA	6 cut(s)	111, 422, 469, 604, 676, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	4 cut(s)	429, 446, 497, 895
HpySE526I	ACGT	2 cut(s)	471, 527
Hsp92II	CATG	4 cut(s)	598, 676, 709, 879
HspAI	GCGC	1 cut(s)	759
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 559, 648
LmnI	GCTCC	5 cut(s)	169, 194, 374, 512, 623
Lsp1109I	GCAGC	3 cut(s)	89, 434, 437
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	6 cut(s)	117, 123, 219, 627, 642, 773
MaeII	ACGT	2 cut(s)	471, 527
MalI	GATC	3 cut(s)	57, 561, 650
MboI	GATC	3 cut(s)	55, 559, 648
MboII	GAAGA	7 cut(s)	148, 250, 338, 463, 746, 794, 819
MhlI	GDGCHC	3 cut(s)	191, 273, 471
MluCI	AATT	6 cut(s)	10, 51, 106, 142, 333, 474
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	222, 447, 497, 558, 568, 685, 703, 855
Mph1103I	ATGCAT	1 cut(s)	877
MroI	TCCGGA	1 cut(s)	14
MroXI	GAANNNNTTC	2 cut(s)	292, 337
MseI	TTAA	3 cut(s)	803, 840, 855
MspCI	CTTAAG	1 cut(s)	802
MspI	CCGG	3 cut(s)	15, 230, 300
MspR9I	CCNGG	1 cut(s)	301
MvnI	CGCG	2 cut(s)	158, 759
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	3 cut(s)	55, 559, 648
NlaIII	CATG	4 cut(s)	598, 676, 709, 879
NlaIV	GGNNCC	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	434
PdmI	GAANNNNTTC	2 cut(s)	292, 337
PfeI	GAWTC	3 cut(s)	293, 581, 598
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	79, 424, 427, 633
PleI	GAGTC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	465
Ppu21I	YACGTR	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
SaqAI	TTAA	3 cut(s)	803, 840, 855
SatI	GCNGC	4 cut(s)	78, 423, 426, 632
Sau3AI	GATC	3 cut(s)	55, 559, 648
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	3 cut(s)	191, 273, 471
SfaNI	GCATC	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SpeI	ACTAGT	2 cut(s)	122, 218
Sse9I	AATT	6 cut(s)	10, 51, 106, 142, 333, 474
SseBI	AGGCCT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	158, 257, 631
SspMI	CTAG	6 cut(s)	117, 123, 219, 627, 642, 773
StuI	AGGCCT	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	742
TaiI	ACGT	2 cut(s)	474, 530
TaqI	TCGA	1 cut(s)	28
TasI	AATT	6 cut(s)	10, 51, 106, 142, 333, 474
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	3 cut(s)	293, 581, 598
Tru1I	TTAA	3 cut(s)	803, 840, 855
Tru9I	TTAA	3 cut(s)	803, 840, 855
TscAI	CASTG	1 cut(s)	821
TseI	GCWGC	3 cut(s)	77, 422, 425
TspDTI	ATGAA	2 cut(s)	77, 747
TspRI	CASTG	1 cut(s)	821
Vha464I	CTTAAG	1 cut(s)	802
VneI	GTGCAC	1 cut(s)	467
XapI	RAATTY	2 cut(s)	10, 142
XceI	RCATGY	1 cut(s)	676
XmnI	GAANNNNTTC	2 cut(s)	292, 337
XspI	CTAG	6 cut(s)	117, 123, 219, 627, 642, 773
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.