Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003577.1

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Forward (+)

47036 .. 49948

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003577.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ctgcactggctatgtgcaatttctggcttccacagctttcaacacttaaaaacccaagctgggtttttcaaaaccttaagctatcattgtgatcctgcaaaaggtctcaaattttctcatacttttcaatacaatcctcgtagacattcctggtttttgtcaagtataatgtttgcgagttctggaagctccatctgttgccagtcaggaattaatcagatcaagccaactgaagcagctttgtcgcgcggggttggcttctttaattgcagaactgctcccttgctgaagtcttcatcatttctctccgcaaggaattctctacactacattgtgggtttaaacacgttcgatgtaaagtgctcccagaagcaaagtagacaaactataactgcttcaaaagaaattgagaagaaaataatcaagaaggtgggaaggaatgagcaccacttatggaagaaaaaagactcagctgggtctggacaaaaggcactcaaccttgttagaattgtttccgatcttcccaatgagaaagaggctatttttggagcattggataaatggacagcttgggagacagagttcccactgattgcagcagctaaggctttgagaattctaaggaagaggagacagtggatgcgtgtaattcaagtggcaaagtggatgctaagcaaaggtcaaggaacaacaatggcaacatatgacacccttctactggcatttgatatggatcataggctagatgaggctgaatcactgtggaacatgattctgcatacacatacacgctctatctcaaagcggctattttctaggatgatctctttgtacgaacatcacgaaatgaaaaataagataatagaggtattcgcagatatggaggagttgagtgtaagaccagatgaagatacagtcaggagagtggcacgtgcttttcaggagctaggccaagaagacaagagcaaacttgttttgaaaagatatgggtgtaaatggaagtacattcacttcgagggtgaaagggttaaagtgagaactaatgcatgggatgaagatgaaatcctaaccaattcaaatgggagcacaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

364

Amino Acids

41.95

Weight (kDa)

9.66

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	142, 379
AccII	CGCG	2 cut(s)	247, 249
AciI	CCGC	3 cut(s)	249, 309, 805
AclWI	GGATC	2 cut(s)	86, 741
AcsI	RAATTY	3 cut(s)	110, 316, 615
AcuI	CTGAAG	2 cut(s)	252, 308
AcvI	CACGTG	1 cut(s)	932
AfaI	GTAC	2 cut(s)	833, 1004
AfiI	CCNNNNNNNGG	3 cut(s)	60, 101, 718
AflII	CTTAAG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	7 cut(s)	41, 70, 128, 399, 653, 979, 1077
AjnI	CCWGG	1 cut(s)	149
AloI	GAACNNNNNNTCC	2 cut(s)	566, 598
AluBI	AGCT	9 cut(s)	36, 59, 81, 189, 239, 473, 569, 602, 946
AluI	AGCT	9 cut(s)	36, 59, 81, 189, 239, 473, 569, 602, 946
Alw21I	GWGCWC	3 cut(s)	365, 447, 1088
Alw26I	GTCTC	3 cut(s)	110, 569, 625
AlwI	GGATC	2 cut(s)	86, 741
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	3 cut(s)	236, 596, 599
ApoI	RAATTY	3 cut(s)	110, 316, 615
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	1031
BarI	GAAGNNNNNNTAC	2 cut(s)	995, 1027
BbrPI	CACGTG	1 cut(s)	932
BbsI	GAAGAC	2 cut(s)	285, 963
Bbv12I	GWGCWC	3 cut(s)	365, 447, 1088
BbvI	GCAGC	3 cut(s)	248, 608, 611
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	110, 569, 625
BfaI	CTAG	3 cut(s)	743, 816, 947
BfrI	CTTAAG	1 cut(s)	76
BisI	GCNGC	4 cut(s)	237, 597, 600, 806
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	4 cut(s)	238, 598, 601, 807
Bme1390I	CCNGG	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	630, 657
BpiI	GAAGAC	2 cut(s)	285, 963
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 101, 718
Bse1I	ACTGG	3 cut(s)	11, 202, 723
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	4 cut(s)	645, 672, 825, 1057
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	3 cut(s)	60, 101, 718
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	11, 202, 723
BseRI	GAGGAG	2 cut(s)	643, 899
BseXI	GCAGC	3 cut(s)	248, 608, 611
BseYI	CCCAGC	2 cut(s)	59, 473
Bsh1236I	CGCG	2 cut(s)	247, 249
BshFI	GGCC	1 cut(s)	951
BsiHKAI	GWGCWC	3 cut(s)	365, 447, 1088
BslI	CCNNNNNNNGG	3 cut(s)	60, 101, 718
BsmAI	GTCTC	3 cut(s)	110, 569, 625
BsnI	GGCC	1 cut(s)	951
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	365, 447, 1088
Bsp143I	GATC	5 cut(s)	91, 219, 517, 733, 822
Bsp1720I	GCTNAGC	1 cut(s)	671
BspACI	CCGC	3 cut(s)	249, 309, 805
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	1 cut(s)	482
BspFNI	CGCG	2 cut(s)	247, 249
BspPI	GGATC	2 cut(s)	86, 741
BspTI	CTTAAG	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	11, 202, 723
BssMI	GATC	5 cut(s)	91, 219, 517, 733, 822
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	3 cut(s)	636, 762, 916
Bst6I	CTCTTC	1 cut(s)	620
BstAFI	CTTAAG	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	932
BstDEI	CTNAG	4 cut(s)	469, 603, 620, 671
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	645, 672, 825, 1057
BstFNI	CGCG	2 cut(s)	247, 249
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	5 cut(s)	94, 222, 520, 736, 825
BstMAI	GTCTC	3 cut(s)	110, 569, 625
BstMBI	GATC	5 cut(s)	91, 219, 517, 733, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 255, 605
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	2 cut(s)	247, 249
BstV1I	GCAGC	3 cut(s)	248, 608, 611
BstV2I	GAAGAC	2 cut(s)	285, 963
BsuRI	GGCC	1 cut(s)	951
BtsCI	GGATG	4 cut(s)	645, 672, 825, 1057
BtsIMutI	CAGTG	4 cut(s)	4, 587, 641, 758
CfoI	GCGC	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	832, 1003
CviAII	CATG	2 cut(s)	769, 1047
CviQI	GTAC	2 cut(s)	832, 1003
DdeI	CTNAG	4 cut(s)	469, 603, 620, 671
DpnI	GATC	5 cut(s)	93, 221, 519, 735, 824
DpnII	GATC	5 cut(s)	91, 219, 517, 733, 822
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	252, 308
Eco72I	CACGTG	1 cut(s)	932
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRI	GAATTC	2 cut(s)	316, 615
EcoRII	CCWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	1048
FaeI	CATG	2 cut(s)	772, 1050
FatI	CATG	2 cut(s)	768, 1046
FauI	CCCGC	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	142, 379
Fnu4HI	GCNGC	4 cut(s)	237, 597, 600, 806
FokI	GGATG	4 cut(s)	652, 679, 832, 1064
Fsp4HI	GCNGC	4 cut(s)	237, 597, 600, 806
FspBI	CTAG	3 cut(s)	743, 816, 947
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	4 cut(s)	237, 597, 600, 806
GsaI	CCCAGC	2 cut(s)	63, 477
HaeIII	GGCC	1 cut(s)	951
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	772, 1050
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	467, 755, 772
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	2 cut(s)	143, 380
Hpy188I	TCNGA	3 cut(s)	219, 517, 1094
Hpy188III	TCNNGA	7 cut(s)	183, 207, 424, 480, 842, 919, 941
Hpy8I	GTNNAC	2 cut(s)	143, 380
HpyAV	CCTTC	3 cut(s)	421, 429, 722
HpyCH4III	ACNGT	3 cut(s)	636, 762, 916
HpyCH4IV	ACGT	2 cut(s)	347, 931
HpyCH4V	TGCA	7 cut(s)	4, 17, 98, 270, 596, 778, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 255, 605
HpyF3I	CTNAG	4 cut(s)	469, 603, 620, 671
HpySE526I	ACGT	2 cut(s)	347, 931
Hsp92II	CATG	2 cut(s)	772, 1050
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	91, 219, 517, 733, 822
LmnI	GCTCC	6 cut(s)	194, 283, 368, 548, 943, 1083
Lsp1109I	GCAGC	3 cut(s)	248, 608, 611
LweI	GCATC	2 cut(s)	630, 657
MaeI	CTAG	3 cut(s)	743, 816, 947
MaeII	ACGT	2 cut(s)	347, 931
MalI	GATC	5 cut(s)	93, 221, 519, 735, 824
MboI	GATC	5 cut(s)	91, 219, 517, 733, 822
MboII	GAAGA	8 cut(s)	285, 424, 469, 512, 637, 920, 968, 1067
MhlI	GDGCHC	3 cut(s)	365, 447, 1088
MlyI	GAGTC	1 cut(s)	461
MnlI	CCTC	7 cut(s)	147, 529, 621, 742, 859, 877, 1009
Mph1103I	ATGCAT	1 cut(s)	1048
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	6 cut(s)	47, 77, 213, 264, 341, 1029
MspA1I	CMGCKG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	151
MssI	GTTTAAAC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	2 cut(s)	247, 249
MwoI	GCNNNNNNNGC	3 cut(s)	33, 255, 605
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	5 cut(s)	91, 219, 517, 733, 822
NlaIII	CATG	2 cut(s)	772, 1050
NsiI	ATGCAT	1 cut(s)	1048
PcsI	WCGNNNNNNNCGW	1 cut(s)	840
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	755, 772
PkrI	GCNGC	4 cut(s)	238, 598, 601, 807
PleI	GAGTC	1 cut(s)	461
PmaCI	CACGTG	1 cut(s)	932
PmeI	GTTTAAAC	1 cut(s)	342
PmlI	CACGTG	1 cut(s)	932
PpsI	GAGTC	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	932
PspFI	CCCAGC	2 cut(s)	59, 473
PspGI	CCWGG	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	833, 1004
RsaNI	GTAC	2 cut(s)	832, 1003
SaqAI	TTAA	6 cut(s)	47, 77, 213, 264, 341, 1029
SatI	GCNGC	4 cut(s)	237, 597, 600, 806
Sau3AI	GATC	5 cut(s)	91, 219, 517, 733, 822
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	3 cut(s)	365, 447, 1088
SfaNI	GCATC	2 cut(s)	630, 657
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SsiI	CCGC	3 cut(s)	249, 309, 805
SspMI	CTAG	3 cut(s)	743, 816, 947
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	3 cut(s)	636, 762, 916
TaiI	ACGT	2 cut(s)	350, 934
TaqI	TCGA	2 cut(s)	351, 1014
TatI	WGTACW	1 cut(s)	1002
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	2 cut(s)	755, 772
Tru1I	TTAA	6 cut(s)	47, 77, 213, 264, 341, 1029
Tru9I	TTAA	6 cut(s)	47, 77, 213, 264, 341, 1029
TscAI	CASTG	3 cut(s)	594, 641, 765
TseI	GCWGC	3 cut(s)	236, 596, 599
TspDTI	ATGAA	5 cut(s)	285, 863, 921, 1068, 1074
TspRI	CASTG	3 cut(s)	594, 641, 765
Vha464I	CTTAAG	1 cut(s)	76
VspI	ATTAAT	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	99
XapI	RAATTY	3 cut(s)	110, 316, 615
XmiI	GTMKAC	2 cut(s)	142, 379
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	3 cut(s)	743, 816, 947
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.