Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Reverse (-)

9141918 .. 9145299

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTTGCGAGTTCTGGAAGCTCCATCTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCAGCTTTGTCGCGCGGGGTTGGCTTCTTTAATTGCAGAACTGCTCCCTTGCTGAAGTCTTCATCATTTCTCTCCGCAAGGAATTCTCTACACTACATTGTGGGTTTAAACACGTTCGATGTAAAGTGCTCCCAGAAGCAAAGTAGACAAACTATAACTGCTTCAAAAGAAATTGAGAAGAAAATAATCAAGAAGGTGGGAAGGAATGAGCACCACTTATGGAAGAAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAACCTTGTTAGAATTGTTTCCGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAAGAGGAGACAGTGGATGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAACAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATCATAGGCTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCATACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTACGAACATCACGAAATGAAAAATAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACAGTCAGGAGAGTGGCACGTGCTTTTCAGGAGCTAGGCCAAGAAGACAAGAGCAAACTTGTTTTGAAAAGATATGGGTGTAAATGGAAGTACATTCACTTCGAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGATGAAGATGAAATCCTAACCAATTCAAATGGGAGCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

308

Amino Acids

35.35

Weight (kDa)

9.57

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	2 cut(s)	79, 81
AciI	CCGC	3 cut(s)	81, 141, 637
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	2 cut(s)	148, 447
AcuI	CTGAAG	2 cut(s)	84, 140
AcvI	CACGTG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	665, 836
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	4 cut(s)	231, 485, 811, 909
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	6 cut(s)	21, 71, 305, 401, 434, 778
AluI	AGCT	6 cut(s)	21, 71, 305, 401, 434, 778
Alw21I	GWGCWC	3 cut(s)	197, 279, 920
Alw26I	GTCTC	2 cut(s)	401, 457
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	3 cut(s)	68, 428, 431
ApoI	RAATTY	2 cut(s)	148, 447
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	863
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
BbrPI	CACGTG	1 cut(s)	764
BbsI	GAAGAC	2 cut(s)	117, 795
Bbv12I	GWGCWC	3 cut(s)	197, 279, 920
BbvI	GCAGC	3 cut(s)	80, 440, 443
BccI	CCATC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BcoDI	GTCTC	2 cut(s)	401, 457
BfaI	CTAG	3 cut(s)	575, 648, 779
BisI	GCNGC	4 cut(s)	69, 429, 432, 638
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	4 cut(s)	70, 430, 433, 639
BmsI	GCATC	2 cut(s)	462, 489
BpiI	GAAGAC	2 cut(s)	117, 795
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	764
BsaBI	GATNNNNATC	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	34, 555
Bse8I	GATNNNNATC	1 cut(s)	564
BseGI	GGATG	4 cut(s)	477, 504, 657, 889
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	34, 555
BseRI	GAGGAG	2 cut(s)	475, 731
BseXI	GCAGC	3 cut(s)	80, 440, 443
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	79, 81
BshFI	GGCC	1 cut(s)	783
BsiHKAI	GWGCWC	3 cut(s)	197, 279, 920
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	401, 457
BsnI	GGCC	1 cut(s)	783
Bsp1286I	GDGCHC	3 cut(s)	197, 279, 920
Bsp143I	GATC	4 cut(s)	51, 349, 565, 654
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	3 cut(s)	81, 141, 637
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	1 cut(s)	314
BspFNI	CGCG	2 cut(s)	79, 81
BspPI	GGATC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	34, 555
BssMI	GATC	4 cut(s)	51, 349, 565, 654
Bst4CI	ACNGT	3 cut(s)	468, 594, 748
Bst6I	CTCTTC	1 cut(s)	452
BstBAI	YACGTR	1 cut(s)	764
BstDEI	CTNAG	4 cut(s)	301, 435, 452, 503
BstF5I	GGATG	4 cut(s)	477, 504, 657, 889
BstFNI	CGCG	2 cut(s)	79, 81
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	54, 352, 568, 657
BstMAI	GTCTC	2 cut(s)	401, 457
BstMBI	GATC	4 cut(s)	51, 349, 565, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 437
BstUI	CGCG	2 cut(s)	79, 81
BstV1I	GCAGC	3 cut(s)	80, 440, 443
BstV2I	GAAGAC	2 cut(s)	117, 795
BsuRI	GGCC	1 cut(s)	783
BtsCI	GGATG	4 cut(s)	477, 504, 657, 889
BtsIMutI	CAGTG	3 cut(s)	419, 473, 590
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	664, 835
CviAII	CATG	2 cut(s)	601, 879
CviQI	GTAC	2 cut(s)	664, 835
DdeI	CTNAG	4 cut(s)	301, 435, 452, 503
DpnI	GATC	4 cut(s)	53, 351, 567, 656
DpnII	GATC	4 cut(s)	51, 349, 565, 654
DraI	TTTAAA	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	84, 140
Eco72I	CACGTG	1 cut(s)	764
EcoRI	GAATTC	2 cut(s)	148, 447
EcoT22I	ATGCAT	1 cut(s)	880
FaeI	CATG	2 cut(s)	604, 882
FatI	CATG	2 cut(s)	600, 878
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	4 cut(s)	69, 429, 432, 638
FokI	GGATG	4 cut(s)	484, 511, 664, 896
Fsp4HI	GCNGC	4 cut(s)	69, 429, 432, 638
FspBI	CTAG	3 cut(s)	575, 648, 779
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	69, 429, 432, 638
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	604, 882
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	299, 587, 604
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	51, 349, 926
Hpy188III	TCNNGA	7 cut(s)	15, 39, 256, 312, 674, 751, 773
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	253, 261, 554
HpyCH4III	ACNGT	3 cut(s)	468, 594, 748
HpyCH4IV	ACGT	2 cut(s)	179, 763
HpyCH4V	TGCA	4 cut(s)	102, 428, 610, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 437
HpyF3I	CTNAG	4 cut(s)	301, 435, 452, 503
HpySE526I	ACGT	2 cut(s)	179, 763
Hsp92II	CATG	2 cut(s)	604, 882
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	51, 349, 565, 654
LmnI	GCTCC	6 cut(s)	26, 115, 200, 380, 775, 915
LpnPI	CCDG	9 cut(s)	24, 47, 212, 291, 297, 536, 736, 747, 758
Lsp1109I	GCAGC	3 cut(s)	80, 440, 443
LweI	GCATC	2 cut(s)	462, 489
MaeI	CTAG	3 cut(s)	575, 648, 779
MaeII	ACGT	2 cut(s)	179, 763
MalI	GATC	4 cut(s)	53, 351, 567, 656
MboI	GATC	4 cut(s)	51, 349, 565, 654
MboII	GAAGA	8 cut(s)	117, 256, 301, 344, 469, 752, 800, 899
MhlI	GDGCHC	3 cut(s)	197, 279, 920
MluCI	AATT	8 cut(s)	42, 97, 148, 237, 339, 447, 480, 904
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	361, 453, 574, 691, 709, 841
Mph1103I	ATGCAT	1 cut(s)	880
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	4 cut(s)	45, 96, 173, 861
MspA1I	CMGCKG	1 cut(s)	305
MssI	GTTTAAAC	1 cut(s)	174
MvnI	CGCG	2 cut(s)	79, 81
MwoI	GCNNNNNNNGC	2 cut(s)	87, 437
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	4 cut(s)	51, 349, 565, 654
NlaIII	CATG	2 cut(s)	604, 882
NsiI	ATGCAT	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	587, 604
PkrI	GCNGC	4 cut(s)	70, 430, 433, 639
PleI	GAGTC	1 cut(s)	293
PmaCI	CACGTG	1 cut(s)	764
PmeI	GTTTAAAC	1 cut(s)	174
PmlI	CACGTG	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	764
PshBI	ATTAAT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	305
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	665, 836
RsaNI	GTAC	2 cut(s)	664, 835
SaqAI	TTAA	4 cut(s)	45, 96, 173, 861
SatI	GCNGC	4 cut(s)	69, 429, 432, 638
Sau3AI	GATC	4 cut(s)	51, 349, 565, 654
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	3 cut(s)	197, 279, 920
SfaNI	GCATC	2 cut(s)	462, 489
Sse9I	AATT	8 cut(s)	42, 97, 148, 237, 339, 447, 480, 904
SsiI	CCGC	3 cut(s)	81, 141, 637
SspMI	CTAG	3 cut(s)	575, 648, 779
TaaI	ACNGT	3 cut(s)	468, 594, 748
TaiI	ACGT	2 cut(s)	182, 766
TaqI	TCGA	2 cut(s)	183, 846
TasI	AATT	8 cut(s)	42, 97, 148, 237, 339, 447, 480, 904
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	587, 604
Tru1I	TTAA	4 cut(s)	45, 96, 173, 861
Tru9I	TTAA	4 cut(s)	45, 96, 173, 861
TscAI	CASTG	3 cut(s)	426, 473, 597
TseI	GCWGC	3 cut(s)	68, 428, 431
TspDTI	ATGAA	5 cut(s)	117, 695, 753, 900, 906
TspRI	CASTG	3 cut(s)	426, 473, 597
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	2 cut(s)	148, 447
XmiI	GTMKAC	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	3 cut(s)	575, 648, 779
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.