Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009351

Physical Location & Seq

Genomic Coordinates Forward (+)

36229054 .. 36232092

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1270000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATAGTGAATTCCAGATATTGTATTCGATGTCAGTTCCCCTTATCAGGAATTGATCAGATCACAACTACTGAAGCAGCTTTGTTGTTGGGGTTCGGCTTCCCTAATTGCAAAACTTCTCTCTTGTGGAAGAAAAATTATGTACATCAGACGGTGGCTATACATACATCCAATGTCAAGTTCTCCTACAAGCAAAGTAGACAACCTTTAACTAGTTCCAAAACAACTGAGAAGAAAATAATCAAGAAGGCAGGAAAGAAAGATCACCACTTATGGCAGAAAAAGGACTCTGCCGGGTCTGGGCAAAAGGCACTCAATCTCGTCAGAATTGTCTCCAGTCTTCCTAATGAGAAAGAGACCATTTTTGGAGCATTAGATAAATGGACAGCTTGGGAGACAGGGTTTCCATTGATTGCAGCAGCGAAGGCCTTGATAATCTTAAGGAAGAGGAGTCAATGGGTTCGTGTAATTCAAGTAGCAAAGTGGATGTTGAGCAAAGGCCAAGGAGCAACAATGGGAACGTATGATACCCTTCTGCTGGCATTTGATATGGATCAGAGGGTCGATGAGGCTGAATCACTGTGGAACATGATTCTGCACACGCATTCACGCTCCATCTCAAGGCGGTTGTTTTCTAGGATGATTTCTTTGTATCATCATCACGACATGCAAAGCAAGATAATAGAGGTATTTGCAGACATGGAGGAGTTAGGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCTTTCCAGGAATTAGGGCAAGAGGAGAACAAAAAACTCTTTTTGAGAAGATACCACTGTAAATGGAAGTACATTCACTTTAAGGGTGAAAGGGTTAAAGTAAGAAGCACTAATGCATGGGATGAAGATAATAACTTAAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

300

Amino Acids

34.66

Weight (kDa)

9.79

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18975 AT4G18975 AT4G18975 AT4G18975
fragaria_vesca	FvH4_3g35760
malus_domestica	MD00G1093300.v1.1 MD10G1270000.v1.1
prunus_persica	Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1 Prupe.4G071600_v2.0.a1
pyrus_communis	pycom10g22610
rosa_chinensis	RchiOBHm_Chr5g0012591
rosa_laevigata	RLG00000031927
rosa_multiflora	Rmu_sc0003577.1_g000009
rosa_roxburghii	Rroxscaffold_1G00064080
rosa_rugosa	Rorug05G0002800
rosa_samantha	Rh5AG096600 Rh5BG092900 Rh5CG105700 Rh5DG092300
rosa_wichuraiana	Rw5G008460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	1 cut(s)	625
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	93
AcvI	CACGTG	1 cut(s)	752
AfaI	GTAC	2 cut(s)	144, 824
AfiI	CCNNNNNNNGG	4 cut(s)	47, 300, 538, 621
AflII	CTTAAG	2 cut(s)	439, 889
AgsI	TTSAA	1 cut(s)	473
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	2 cut(s)	80, 389
AluI	AGCT	2 cut(s)	80, 389
Alw26I	GTCTC	3 cut(s)	337, 350, 389
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	2 cut(s)	426, 499
ApeKI	GCWGC	3 cut(s)	77, 416, 419
ApoI	RAATTY	1 cut(s)	10
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	257, 851
BaeI	ACNNNNGTAYC	2 cut(s)	796, 829
BbrPI	CACGTG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	89, 428, 431
BccI	CCATC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	761
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	337, 350, 389
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	2 cut(s)	213, 636
BfrI	CTTAAG	2 cut(s)	439, 889
BisI	GCNGC	3 cut(s)	78, 417, 420
BlsI	GCNGC	3 cut(s)	79, 418, 421
Bme1390I	CCNGG	2 cut(s)	295, 761
BmrFI	CCNGG	2 cut(s)	295, 761
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 300, 538, 621
Bse1I	ACTGG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	4 cut(s)	167, 492, 645, 880
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	4 cut(s)	47, 300, 538, 621
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	3 cut(s)	463, 719, 791
BseXI	GCAGC	3 cut(s)	89, 428, 431
BsgI	GTGCAG	1 cut(s)	581
BshFI	GGCC	2 cut(s)	428, 501
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	47, 300, 538, 621
BsmAI	GTCTC	3 cut(s)	337, 350, 389
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	428, 501
Bso31I	GGTCTC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	4 cut(s)	55, 60, 262, 553
BspACI	CCGC	1 cut(s)	625
BspANI	GGCC	2 cut(s)	428, 501
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	561
BspTI	CTTAAG	2 cut(s)	439, 889
BspTNI	GGTCTC	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	4 cut(s)	55, 60, 262, 553
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	154, 582, 736, 812
Bst6I	CTCTTC	1 cut(s)	440
BstAFI	CTTAAG	2 cut(s)	439, 889
BstAUI	TGTACA	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	167, 492, 645, 880
BstKTI	GATC	4 cut(s)	58, 63, 265, 556
BstMAI	GTCTC	3 cut(s)	337, 350, 389
BstMBI	GATC	4 cut(s)	55, 60, 262, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	2 cut(s)	293, 759
BstV1I	GCAGC	3 cut(s)	89, 428, 431
BstV2I	GAAGAC	1 cut(s)	332
BsuRI	GGCC	2 cut(s)	428, 501
BtsCI	GGATG	4 cut(s)	167, 492, 645, 880
BtsIMutI	CAGTG	2 cut(s)	578, 808
Cac8I	GCNNGC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	143, 823
CviAII	CATG	4 cut(s)	589, 667, 700, 870
CviJI	RGCY	7 cut(s)	80, 99, 158, 389, 428, 501, 572
CviKI_1	RGCY	7 cut(s)	80, 99, 158, 389, 428, 501, 572
CviQI	GTAC	2 cut(s)	143, 823
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	57, 62, 264, 555
DpnII	GATC	4 cut(s)	55, 60, 262, 553
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	93
Eco72I	CACGTG	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	871
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	4 cut(s)	592, 670, 703, 873
FatI	CATG	4 cut(s)	588, 666, 699, 869
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	78, 417, 420
FokI	GGATG	4 cut(s)	154, 499, 652, 887
Fsp4HI	GCNGC	3 cut(s)	78, 417, 420
FspBI	CTAG	2 cut(s)	213, 636
GluI	GCNGC	3 cut(s)	78, 417, 420
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	428, 501
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	4 cut(s)	592, 670, 703, 873
HinfI	GANTC	4 cut(s)	287, 451, 575, 592
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	257, 851
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	60, 150, 326, 558
Hpy188III	TCNNGA	5 cut(s)	15, 48, 244, 662, 739
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	241, 418, 542
HpyCH4III	ACNGT	4 cut(s)	154, 582, 736, 812
HpyCH4IV	ACGT	2 cut(s)	521, 751
HpyCH4V	TGCA	6 cut(s)	111, 416, 598, 670, 695, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	521, 751
Hsp92II	CATG	4 cut(s)	592, 670, 703, 873
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	55, 60, 262, 553
LmnI	GCTCC	3 cut(s)	368, 506, 617
Lsp1109I	GCAGC	3 cut(s)	89, 428, 431
MaeI	CTAG	2 cut(s)	213, 636
MaeII	ACGT	2 cut(s)	521, 751
MalI	GATC	4 cut(s)	57, 62, 264, 555
MboI	GATC	4 cut(s)	55, 60, 262, 553
MboII	GAAGA	7 cut(s)	142, 244, 332, 457, 740, 813, 890
MluCI	AATT	7 cut(s)	10, 51, 106, 136, 327, 468, 764
MlyI	GAGTC	2 cut(s)	281, 460
MnlI	CCTC	6 cut(s)	441, 552, 562, 679, 697, 769
Mph1103I	ATGCAT	1 cut(s)	871
MseI	TTAA	5 cut(s)	209, 440, 834, 849, 890
MspCI	CTTAAG	2 cut(s)	439, 889
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	295, 761
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	55, 60, 262, 553
NlaIII	CATG	4 cut(s)	592, 670, 703, 873
NsiI	ATGCAT	1 cut(s)	871
NspI	RCATGY	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	428
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	2 cut(s)	575, 592
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	3 cut(s)	79, 418, 421
PleI	GAGTC	2 cut(s)	281, 459
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
PpsI	GAGTC	2 cut(s)	281, 459
Ppu21I	YACGTR	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	759
PspCI	CACGTG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	759
PsrI	GAACNNNNNNTAC	2 cut(s)	511, 543
RsaI	GTAC	2 cut(s)	144, 824
RsaNI	GTAC	2 cut(s)	143, 823
SaqAI	TTAA	5 cut(s)	209, 440, 834, 849, 890
SatI	GCNGC	3 cut(s)	78, 417, 420
Sau3AI	GATC	4 cut(s)	55, 60, 262, 553
SchI	GAGTC	2 cut(s)	281, 460
ScrFI	CCNGG	2 cut(s)	295, 761
SetI	ASST	7 cut(s)	82, 208, 391, 524, 690, 715, 754
SmlI	CTYRAG	3 cut(s)	439, 619, 889
SmoI	CTYRAG	3 cut(s)	439, 619, 889
SpeI	ACTAGT	1 cut(s)	212
Sse9I	AATT	7 cut(s)	10, 51, 106, 136, 327, 468, 764
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	1 cut(s)	625
SspMI	CTAG	2 cut(s)	213, 636
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	293, 759
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	154, 582, 736, 812
TaiI	ACGT	2 cut(s)	524, 754
TaqI	TCGA	2 cut(s)	28, 564
TasI	AATT	7 cut(s)	10, 51, 106, 136, 327, 468, 764
TatI	WGTACW	2 cut(s)	142, 822
TfiI	GAWTC	2 cut(s)	575, 592
Tru1I	TTAA	5 cut(s)	209, 440, 834, 849, 890
Tru9I	TTAA	5 cut(s)	209, 440, 834, 849, 890
TscAI	CASTG	2 cut(s)	585, 815
TseI	GCWGC	3 cut(s)	77, 416, 419
TspDTI	ATGAA	2 cut(s)	741, 891
TspRI	CASTG	2 cut(s)	585, 815
Vha464I	CTTAAG	2 cut(s)	439, 889
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	2 cut(s)	213, 636
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.