AT4G19150

Ankyrin repeats (many copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012348
Physical Location & Seq
Reverse (-)
10471331 .. 10472742
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19150.1

Sequence Viewer

Length: 732 bp
ATGGCAGGCAGAAGCGGCGGCGGAAGAGGAGGAGGAGGAGGAGGAGCATCGGCTGATCTTCACTCCGCGGCAAGATCCGGTGATTTAGCAGCAGTTCAATCTATTATCAGCTCTAATCCTTTGGCTGTTAATTCTAGGGATAAGCATTCTCGGACTCCACTACATTTAGCAGCATGGGCAGGGCACAACGAGGTAGTGAGCTACTTATGCAAGAACAAAGCTGATGTTGGTGCTGCAGCAGGAGATGACATGGGTGCGATTCACTTTGCTTCTCAAAAGGGGCATTTGGAAGTTGTGAGAACTTTATTATCTGCCGGTGGTTCTGTGAAGTCTATCACTCGCAAGGGACTCACTCCTCTTCACTACGCTGCTCAAGGTTCTCACTTTGAAATCGTCAAGTACTTGGTTAAGAAAGGAGCAAGCGTCAGAGCTACGACTAAGGCTGGGAAGAGTCCAGCTGATGTTGCGGGTAATGCAGAAACGCAAAATTTCCTTGAAGAATGTGAAGAGCAAGCAAGGAAAGCTAAGGTGAACAATGAGAAAAAGACGGAAATAGTGAAACCAGAGAGTTGTAGCAATGAAGGAGATGTCAAGGATCTGAAAAGAAAGGACTCTGAGGATGGAAACGAGGGTGAGGAAGAAGAAGCTTCTTCGAAACCGAAAAAGCCAAAAGTTGCTCTTTCTCATCTTCAGGACATTGACGACACAGAAGCTGATCAAGAAGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5

Protein Analysis

243

Amino Acids

25.52

Weight (kDa)

6.16

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_4 PF13637 20 - 69 2.3e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 20 - 77 1.9e-09 Ankyrin repeats (3 copies)
Ank_5 PF13857 40 - 78 1.3e-07 Ankyrin repeats (many copies)
Ank PF00023 51 - 78 7.7e-07 Ankyrin repeat
Ank_4 PF13637 61 - 103 6.4e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 84 - 144 2.4e-13 Ankyrin repeats (3 copies)
Ank_4 PF13637 87 - 136 1.9e-10 Ankyrin repeats (many copies)
Ank_5 PF13857 113 - 156 2.5e-08 Ankyrin repeats (many copies)
Ank PF00023 116 - 147 9e-09 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19150 AT4G19150
fragaria_vesca FvH4_5g24000
prunus_persica Prupe.5G019900_v2.0.a1
pyrus_communis pycom06g01270
rosa_chinensis RchiOBHm_Chr7g0213461
rosa_laevigata RLG00000002802 RLG00000007782
rosa_multiflora Rmu_co8493477.1_g000002 Rmu_sc0004455.1_g000006 Rmu_sc0013012.1_g000011
rosa_roxburghii Rroxscaffold_3G00245860
rosa_rugosa Rorug07G0142400
rosa_samantha Rh4BG226300 Rh7AG274500 Rh7BG270000 Rh7CG293700 Rh7DG282000
rosa_wichuraiana Rw7G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AciI CCGC 6 cut(s) 15, 18, 21, 66, 68, 467
AclWI GGATC 2 cut(s) 69, 603
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 674
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 3 cut(s) 98, 389, 497
AluBI AGCT 8 cut(s) 111, 201, 221, 431, 458, 524, 647, 713
AluI AGCT 8 cut(s) 111, 201, 221, 431, 458, 524, 647, 713
AlwI GGATC 2 cut(s) 69, 603
AlwNI CAGNNNCTG 1 cut(s) 713
ApeKI GCWGC 5 cut(s) 89, 170, 233, 236, 368
ApoI RAATTY 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 92, 541, 644
AsuII TTCGAA 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 186
BbvI GCAGC 5 cut(s) 101, 182, 220, 248, 355
BccI CCATC 1 cut(s) 614
BclI TGATCA 1 cut(s) 715
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 8 cut(s) 16, 19, 69, 90, 171, 234, 237, 369
BlsI GCNGC 8 cut(s) 17, 20, 70, 91, 172, 235, 238, 370
BmcAI AGTACT 1 cut(s) 401
BmsI GCATC 1 cut(s) 56
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bse118I RCCGGY 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 583
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 625
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 606
BseRI GAGGAG 7 cut(s) 42, 45, 48, 51, 54, 57, 345
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 5 cut(s) 101, 182, 220, 248, 355
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 78, 315
BslFI GGGAC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 145
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 55, 74, 595, 715
BspACI CCGC 6 cut(s) 15, 18, 21, 66, 68, 467
BspCNI CTCAG 1 cut(s) 607
BspFNI CGCG 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 2 cut(s) 69, 603
BspQI GCTCTTC 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 653
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 4 cut(s) 55, 74, 595, 715
Bst6I CTCTTC 5 cut(s) 19, 363, 443, 501, 720
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 3 cut(s) 7, 421, 513
BstDEI CTNAG 3 cut(s) 438, 525, 615
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 4 cut(s) 58, 77, 598, 718
BstMBI GATC 4 cut(s) 55, 74, 595, 715
BstMWI GCNNNNNNNGC 6 cut(s) 15, 176, 207, 464, 473, 521
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 5 cut(s) 101, 182, 220, 248, 355
BstX2I RGATCY 2 cut(s) 74, 595
BstYI RGATCY 2 cut(s) 74, 595
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 625
Cac8I GCNNGC 3 cut(s) 7, 421, 513
CaiI CAGNNNCTG 1 cut(s) 713
Cfr10I RCCGGY 1 cut(s) 314
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 400
CviAII CATG 2 cut(s) 174, 250
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 438, 525, 615
DpnI GATC 4 cut(s) 57, 76, 597, 717
DpnII GATC 4 cut(s) 55, 74, 595, 715
Eam1104I CTCTTC 5 cut(s) 19, 363, 443, 501, 720
EarI CTCTTC 5 cut(s) 19, 363, 443, 501, 720
EciI GGCGGA 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 674
FaeI CATG 2 cut(s) 177, 253
FaiI YATR 3 cut(s) 175, 208, 251
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 173, 249
FauI CCCGC 1 cut(s) 460
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 8 cut(s) 16, 19, 69, 90, 171, 234, 237, 369
FokI GGATG 1 cut(s) 632
Fsp4HI GCNGC 8 cut(s) 16, 19, 69, 90, 171, 234, 237, 369
FspBI CTAG 1 cut(s) 135
GluI GCNGC 8 cut(s) 16, 19, 69, 90, 171, 234, 237, 369
GsaI CCCAGC 1 cut(s) 447
HapII CCGG 2 cut(s) 78, 315
HgaI GACGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 177, 253
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 5 cut(s) 154, 259, 348, 451, 611
HpaII CCGG 2 cut(s) 78, 315
HphI GGTGA 3 cut(s) 92, 541, 644
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 153, 428, 600, 616
Hpy188III TCNNGA 2 cut(s) 692, 719
Hpy8I GTNNAC 1 cut(s) 532
HpyAV CCTTC 1 cut(s) 575
HpyCH4V TGCA 3 cut(s) 210, 236, 476
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 176, 207, 464, 473, 521
HpyF3I CTNAG 3 cut(s) 438, 525, 615
Hsp92II CATG 2 cut(s) 177, 253
Ksp22I TGATCA 1 cut(s) 715
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 4 cut(s) 55, 74, 595, 715
LguI GCTCTTC 1 cut(s) 501
LmnI GCTCC 2 cut(s) 44, 416
LpnPI CCDG 8 cut(s) 91, 165, 225, 328, 429, 468, 576, 677
Lsp1109I GCAGC 5 cut(s) 101, 182, 220, 248, 355
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 135
MalI GATC 4 cut(s) 57, 76, 597, 717
MboI GATC 4 cut(s) 55, 74, 595, 715
MflI RGATCY 2 cut(s) 74, 595
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 2 cut(s) 130, 487
MlyI GAGTC 4 cut(s) 148, 342, 460, 605
MseI TTAA 2 cut(s) 129, 408
MspA1I CMGCKG 2 cut(s) 68, 458
MspI CCGG 2 cut(s) 78, 315
Mva1269I GAATGC 1 cut(s) 145
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 6 cut(s) 15, 176, 207, 464, 473, 521
NdeII GATC 4 cut(s) 55, 74, 595, 715
NlaIII CATG 2 cut(s) 177, 253
NspV TTCGAA 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 501
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 8 cut(s) 17, 20, 70, 91, 172, 235, 238, 370
PleI GAGTC 4 cut(s) 148, 342, 459, 605
PpsI GAGTC 4 cut(s) 148, 342, 459, 605
PspFI CCCAGC 1 cut(s) 443
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 2 cut(s) 74, 595
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 501
SaqAI TTAA 2 cut(s) 129, 408
SatI GCNGC 8 cut(s) 16, 19, 69, 90, 171, 234, 237, 369
Sau3AI GATC 4 cut(s) 55, 74, 595, 715
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 4 cut(s) 148, 342, 460, 605
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 234
Sfr303I CCGCGG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 653
SgrBI CCGCGG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 2 cut(s) 130, 487
SsiI CCGC 6 cut(s) 15, 18, 21, 66, 68, 467
SspMI CTAG 1 cut(s) 135
TaqI TCGA 1 cut(s) 653
TasI AATT 2 cut(s) 130, 487
TatI WGTACW 1 cut(s) 399
TauI GCSGC 3 cut(s) 18, 21, 71
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 129, 408
Tru9I TTAA 2 cut(s) 129, 408
TseI GCWGC 5 cut(s) 89, 170, 233, 236, 368
TspDTI ATGAA 1 cut(s) 594
TspGWI ACGGA 1 cut(s) 563
XapI RAATTY 1 cut(s) 487
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.