Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012348

Physical Location & Seq

Genomic Coordinates Reverse (-)

21025384 .. 21025825

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTTGCTGAAACCTATTTTGTCTTAAAACGATGGGAAATCGACGGAAGGGTACGTCTGACAGAGGAGGCTGTGGAGGAAGAGGAGAAGAAGAAGAAGATGATCTTCTACGGCGGCGAGGTCTGGCGACCTGAGTGCAGTTTAGGAGTGGTGAATTTTCTATGTAAGAATAAGGCTGATGTTGGTGCTGCTGCTATGGATGACATGAAAGCAATACACTTTGATGCGCAAAAGGGACATTTAGAGGAGACCAGTATAGTAGAGTCACCTTTAATCAAGCAGCTAACTGCTATAGTCATAGAATTGTCTAGATCTTTGAGTCTTTGTACTACGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006913 GO:0008150 GO:0009966 GO:0010646 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0023051 GO:0030234 GO:0030496 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044424 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045637 GO:0045639 GO:0045646 GO:0045648 GO:0045859 GO:0046907 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051094 GO:0051169 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051338 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0080090 GO:0098772 GO:1902531 GO:1903706 GO:1903708 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_5

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

5.23

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19150 AT4G19150
fragaria_vesca	FvH4_5g24000
prunus_persica	Prupe.5G019900_v2.0.a1
pyrus_communis	pycom06g01270
rosa_chinensis	RchiOBHm_Chr7g0213461
rosa_laevigata	RLG00000002802 RLG00000007782
rosa_multiflora	Rmu_co8493477.1_g000002 Rmu_sc0004455.1_g000006 Rmu_sc0013012.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245860
rosa_rugosa	Rorug07G0142400
rosa_samantha	Rh4BG226300 Rh7AG274500 Rh7BG270000 Rh7CG293700 Rh7DG282000
rosa_wichuraiana	Rw7G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	228
AciI	CCGC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	54, 328
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	188, 191, 280
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	163, 258
BbvI	GCAGC	3 cut(s)	175, 178, 292
BccI	CCATC	1 cut(s)	27
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	4 cut(s)	115, 189, 192, 281
BlsI	GCNGC	4 cut(s)	116, 190, 193, 282
BmsI	GCATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	3 cut(s)	80, 98, 260
BseXI	GCAGC	3 cut(s)	175, 178, 292
BsgI	GTGCAG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	102, 311
BspACI	CCGC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	102, 311
Bst6I	CTCTTC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	2 cut(s)	105, 314
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	102, 311
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	175, 178, 292
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	205
CfoI	GCGC	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	53, 327
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	3 cut(s)	71, 176, 283
CviKI_1	RGCY	3 cut(s)	71, 176, 283
CviQI	GTAC	2 cut(s)	53, 327
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	2 cut(s)	104, 313
DpnII	GATC	2 cut(s)	102, 311
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	242
FaeI	CATG	1 cut(s)	208
FaiI	YATR	7 cut(s)	163, 197, 206, 257, 293, 299, 337
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	115, 189, 192, 281
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	115, 189, 192, 281
FspBI	CTAG	1 cut(s)	309
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	115, 189, 192, 281
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	263, 319
HphI	GGTGA	2 cut(s)	163, 258
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	42
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	102, 311
LpnPI	CCDG	3 cut(s)	109, 144, 265
Lsp1109I	GCAGC	3 cut(s)	175, 178, 292
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	104, 313
MboI	GATC	2 cut(s)	102, 311
MboII	GAAGA	6 cut(s)	92, 97, 100, 103, 106, 109
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	2 cut(s)	154, 302
MlyI	GAGTC	2 cut(s)	272, 328
MnlI	CCTC	6 cut(s)	58, 61, 70, 76, 112, 238
MseI	TTAA	2 cut(s)	26, 272
MslI	CAYNNNNRTG	1 cut(s)	222
NdeII	GATC	2 cut(s)	102, 311
NlaIII	CATG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	264
NsbI	TGCGCA	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	116, 190, 193, 282
PleI	GAGTC	2 cut(s)	271, 327
PpsI	GAGTC	2 cut(s)	271, 327
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	54, 328
RsaNI	GTAC	2 cut(s)	53, 327
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	26, 272
SatI	GCNGC	4 cut(s)	115, 189, 192, 281
Sau3AI	GATC	2 cut(s)	102, 311
SchI	GAGTC	2 cut(s)	272, 328
SetI	ASST	6 cut(s)	17, 58, 123, 133, 271, 285
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	291
SgeI	CNNG	7 cut(s)	130, 136, 143, 217, 264, 289, 321
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	154, 302
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	154, 302
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	26, 272
Tru9I	TTAA	2 cut(s)	26, 272
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	3 cut(s)	188, 191, 280
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	60
XapI	RAATTY	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	308
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.