Rmu_co8493477.1_g000002

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8493477.1
OG0012348
Physical Location & Seq
Reverse (-)
1893 .. 2414
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8493477.1_g000002.1.cds

Sequence Viewer

Length: 522 bp
atggatgacatgaaagcaatacactttgccgcacaaaagggacatttagaggttgttcgggccctactttcttctggagcttcggtcaagtcttccactcgcaaaggtctgactccgctacactttgctgttcaagggtcccatgtggaacttatcaagtatttggctaggaaaggtgcggatctcactacaaagacaaaagcagggaagaaccctcttgatcttgctagcaatgatgaagtccgctcttgtttggaagagtgtgaaaggtcctctgagaaaggggatctgaatggtaaacagaaagatgaagaatctgatccaaagacaacccagcaggaagatttgaaatctggaggtgaagctccagattctgtccatgatgaacatgccaaggatgaaagtcttaagaggaagggtgataattctgaggaagcctcgggggaacctaaaagagcaagagtttcattgaaccatctccttactgctgatgatgatatacgggacgacgatgacgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

5.21

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19150 AT4G19150
fragaria_vesca FvH4_5g24000
prunus_persica Prupe.5G019900_v2.0.a1
pyrus_communis pycom06g01270
rosa_chinensis RchiOBHm_Chr7g0213461
rosa_laevigata RLG00000002802 RLG00000007782
rosa_multiflora Rmu_co8493477.1_g000002 Rmu_sc0004455.1_g000006 Rmu_sc0013012.1_g000011
rosa_roxburghii Rroxscaffold_3G00245860
rosa_rugosa Rorug07G0142400
rosa_samantha Rh4BG226300 Rh7AG274500 Rh7BG270000 Rh7CG293700 Rh7DG282000
rosa_wichuraiana Rw7G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 246
AciI CCGC 4 cut(s) 30, 116, 179, 244
AclWI GGATC 3 cut(s) 189, 294, 314
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 134, 349, 472
AluBI AGCT 2 cut(s) 80, 365
AluI AGCT 2 cut(s) 80, 365
AlwI GGATC 3 cut(s) 189, 294, 314
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 1 cut(s) 60
ApaI GGGCCC 1 cut(s) 64
AspS9I GGNCC 4 cut(s) 60, 61, 138, 270
AsuHPI GGTGA 2 cut(s) 371, 431
AsuNHI GCTAGC 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 138, 270
BaeGI GKGCMC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 64
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 1 cut(s) 483
BfaI CTAG 2 cut(s) 168, 228
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 138, 270
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 4 cut(s) 60, 61, 138, 270
BmiI GGNNCC 4 cut(s) 62, 139, 140, 447
BmtI GCTAGC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 3 cut(s) 96, 351, 375
BsaJI CCNNGG 2 cut(s) 393, 438
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse3DI GCAATG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 393, 438
BseGI GGATG 2 cut(s) 10, 403
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 267, 420
BseSI GKGCMC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 333
BshFI GGCC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 439
BslFI GGGAC 3 cut(s) 54, 124, 518
BsmFI GGGAC 3 cut(s) 54, 124, 518
BsnI GGCC 1 cut(s) 62
BsoBI CYCGRG 1 cut(s) 439
Bsp120I GGGCCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 181, 220, 286, 319
BspACI CCGC 4 cut(s) 30, 116, 179, 244
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 268, 421
BspLI GGNNCC 4 cut(s) 62, 139, 140, 447
BspOI GCTAGC 1 cut(s) 231
BspPI GGATC 3 cut(s) 189, 294, 314
BspTI CTTAAG 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 393, 438
BssMI GATC 4 cut(s) 181, 220, 286, 319
BssT1I CCWWGG 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 276, 429
BstF5I GGATG 2 cut(s) 10, 403
BstKTI GATC 4 cut(s) 184, 223, 289, 322
BstMBI GATC 4 cut(s) 181, 220, 286, 319
BstNSI RCATGY 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 181, 286
BstYI RGATCY 2 cut(s) 181, 286
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 10, 403
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 374
Cfr13I GGNCC 4 cut(s) 60, 61, 138, 270
CviAII CATG 4 cut(s) 10, 143, 380, 389
CviJI RGCY 5 cut(s) 62, 80, 167, 365, 437
CviKI_1 RGCY 5 cut(s) 62, 80, 167, 365, 437
DdeI CTNAG 2 cut(s) 276, 429
DpnI GATC 4 cut(s) 183, 222, 288, 321
DpnII GATC 4 cut(s) 181, 220, 286, 319
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 138, 270
Eco88I CYCGRG 1 cut(s) 439
EcoO109I RGGNCCY 3 cut(s) 61, 138, 270
EcoT14I CCWWGG 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 4 cut(s) 13, 146, 383, 392
FaiI YATR 5 cut(s) 11, 144, 381, 390, 500
FaqI GGGAC 3 cut(s) 54, 124, 518
FatI CATG 4 cut(s) 9, 142, 379, 388
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 17, 410
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 168, 228
GluI GCNGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 337
GsuI CTGGAG 3 cut(s) 96, 351, 375
HaeIII GGCC 1 cut(s) 62
Hin1II CATG 4 cut(s) 13, 146, 383, 392
HinfI GANTC 3 cut(s) 112, 314, 371
HphI GGTGA 2 cut(s) 371, 431
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 111, 277, 291, 319, 430
Hpy188III TCNNGA 4 cut(s) 75, 218, 354, 368
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 409
HpyF3I CTNAG 2 cut(s) 276, 429
Hsp92II CATG 4 cut(s) 13, 146, 383, 392
KflI GGGWCCC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 181, 220, 286, 319
LmnI GCTCC 2 cut(s) 77, 370
LpnPI CCDG 6 cut(s) 60, 189, 323, 339, 347, 381
MaeI CTAG 2 cut(s) 168, 228
MalI GATC 4 cut(s) 183, 222, 288, 321
MbiI CCGCTC 1 cut(s) 246
MboI GATC 4 cut(s) 181, 220, 286, 319
MboII GAAGA 6 cut(s) 63, 84, 220, 269, 323, 353
MflI RGATCY 2 cut(s) 181, 286
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 424
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 7 cut(s) 43, 225, 283, 350, 405, 424, 448
MseI TTAA 1 cut(s) 408
MspCI CTTAAG 1 cut(s) 407
NdeII GATC 4 cut(s) 181, 220, 286, 319
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 13, 146, 383, 392
NlaIV GGNNCC 4 cut(s) 62, 139, 140, 447
NspI RCATGY 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 2 cut(s) 314, 371
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PpuMI RGGWCCY 2 cut(s) 138, 270
Psp5II RGGWCCY 2 cut(s) 138, 270
PspFI CCCAGC 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 62, 139, 140, 447
PspOMI GGGCCC 1 cut(s) 60
PspPI GGNCC 4 cut(s) 60, 61, 138, 270
PspPPI RGGWCCY 2 cut(s) 138, 270
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 181, 286
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 4 cut(s) 181, 220, 286, 319
Sau96I GGNCC 4 cut(s) 60, 61, 138, 270
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 64
SetI ASST 8 cut(s) 54, 82, 109, 178, 272, 361, 367, 451
SinI GGWCC 2 cut(s) 138, 270
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 1 cut(s) 424
SsiI CCGC 4 cut(s) 30, 116, 179, 244
SspMI CTAG 2 cut(s) 168, 228
StyI CCWWGG 1 cut(s) 393
TaqII GACCGA 1 cut(s) 73
TasI AATT 1 cut(s) 424
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 2 cut(s) 314, 371
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TspDTI ATGAA 6 cut(s) 26, 252, 324, 399, 414, 456
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 138, 270
XceI RCATGY 1 cut(s) 392
XspI CTAG 2 cut(s) 168, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.