Rh7CG293700

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012348
Physical Location & Seq
Forward (+)
29990338 .. 29992280
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG293700.1

Sequence Viewer

Length: 744 bp
ATGGGAAATCGACGGAAGGGTACGAGTGGCGGAGGAGAAACAGACCTTCACGCGGCGGCGAGGTCCGGCGACCTGAGTGGAGTTCAGGTGATTGTCAGCTCTAACCCTTTGAAGGTTAATGGGAGAGATAAGCACTCCAGAACTCCACTACATTTAGCTGCGTGGGCTGGGCAAACGGAAGTGGTGAATTTTCTGTGTAAGAACAAGGCTGATGTTGGTGCTGCTGCTATGGATGACATGAAAGCAATACACTTTGCTGTGCAAAAGGGACATTTAGAGGTTGTTCGGGCTCTACTTTCTTCTGGAGCTTCGGTCAAGTCTTCCACTCGCAAAGGTCTGACTCCGCTACACTTTGCTGTTCAAGGGTCCCATGTGGAACTTATCAAGTATTTGGCTAGGAAAGGTGCGGATCTCACTACAAAGACAAAAGCAGGGAAGACCCCTCTTGATCTTGCTAGCAATGATGAAGTCCGCTCTTGTTTGGAAGAGTGTGAAAGGTCCTCTGAGAAAGGGGATCTGAATGGTAAACAGAAAGATGAAGAATCTGATCCAAAGACAACCCAGCTGGAAGATGTGAAATCTGGAGGTGAAGCTCCAGATTCTGTCAATGATGAACATGCCAAGGATGAAAGTCTGAAGAGGAAGGGTGATAATTTTGAGGAAGCCTTGGGGGAACCTAAAAGAGCAAGAGTTTCATTGAACCATCTCCTTACTGCTGATGATGATATACAGGACGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5

Protein Analysis

247

Amino Acids

26.53

Weight (kDa)

6.02

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 11 - 73 4.4e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 16 - 65 9.8e-07 Ankyrin repeats (many copies)
Ank_5 PF13857 36 - 73 2.5e-06 Ankyrin repeats (many copies)
Ank PF00023 47 - 74 2.2e-06 Ankyrin repeat
Ank_2 PF12796 83 - 154 6.5e-14 Ankyrin repeats (3 copies)
Ank_4 PF13637 83 - 131 5.2e-12 Ankyrin repeats (many copies)
Ank_5 PF13857 103 - 152 7.3e-09 Ankyrin repeats (many copies)
Ank PF00023 112 - 142 4.5e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012348)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19150 AT4G19150
fragaria_vesca FvH4_5g24000
prunus_persica Prupe.5G019900_v2.0.a1
pyrus_communis pycom06g01270
rosa_chinensis RchiOBHm_Chr7g0213461
rosa_laevigata RLG00000002802 RLG00000007782
rosa_multiflora Rmu_co8493477.1_g000002 Rmu_sc0004455.1_g000006 Rmu_sc0013012.1_g000011
rosa_roxburghii Rroxscaffold_3G00245860
rosa_rugosa Rorug07G0142400
rosa_samantha Rh4BG226300 Rh7AG274500 Rh7BG270000 Rh7CG293700 Rh7DG282000
rosa_wichuraiana Rw7G023810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 474
AccII CGCG 1 cut(s) 53
AciI CCGC 6 cut(s) 30, 53, 56, 344, 407, 472
AclWI GGATC 3 cut(s) 417, 522, 542
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 52, 112
AgsI TTSAA 3 cut(s) 112, 362, 700
AluBI AGCT 5 cut(s) 99, 158, 308, 565, 593
AluI AGCT 5 cut(s) 99, 158, 308, 565, 593
AlwI GGATC 3 cut(s) 417, 522, 542
AlwNI CAGNNNCTG 1 cut(s) 602
ApeKI GCWGC 3 cut(s) 158, 221, 224
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 3 cut(s) 63, 366, 498
AsuHPI GGTGA 4 cut(s) 100, 196, 599, 659
AsuNHI GCTAGC 1 cut(s) 455
AvaII GGWCC 3 cut(s) 63, 366, 498
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 312, 443
BbvI GCAGC 3 cut(s) 145, 208, 211
BccI CCATC 1 cut(s) 711
BfaI CTAG 2 cut(s) 396, 456
BisI GCNGC 5 cut(s) 54, 57, 159, 222, 225
BlsI GCNGC 5 cut(s) 55, 58, 160, 223, 226
Bme18I GGWCC 3 cut(s) 63, 366, 498
BmgT120I GGNCC 3 cut(s) 63, 366, 498
BmiI GGNNCC 3 cut(s) 367, 368, 675
BmtI GCTAGC 1 cut(s) 459
BpiI GAAGAC 2 cut(s) 312, 443
BpmI CTGGAG 4 cut(s) 121, 324, 579, 603
BsaJI CCNNGG 2 cut(s) 621, 666
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 297, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 112
Bse3DI GCAATG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 621, 666
BseGI GGATG 2 cut(s) 238, 631
BseLI CCNNNNNNNGG 2 cut(s) 52, 112
BseMI GCAATG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 65, 495
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 3 cut(s) 145, 208, 211
BseYI CCCAGC 2 cut(s) 167, 561
Bsh1236I CGCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 2 cut(s) 282, 352
BslI CCNNNNNNNGG 2 cut(s) 52, 112
BsmFI GGGAC 2 cut(s) 282, 352
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 4 cut(s) 409, 448, 514, 547
BspACI CCGC 6 cut(s) 30, 53, 56, 344, 407, 472
BspCNI CTCAG 2 cut(s) 66, 496
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 367, 368, 675
BspOI GCTAGC 1 cut(s) 459
BspPI GGATC 3 cut(s) 417, 522, 542
BsrBI CCGCTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 621, 666
BssMI GATC 4 cut(s) 409, 448, 514, 547
BssT1I CCWWGG 2 cut(s) 621, 666
Bst6I CTCTTC 2 cut(s) 480, 632
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 2 cut(s) 74, 504
BstF5I GGATG 2 cut(s) 238, 631
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 4 cut(s) 412, 451, 517, 550
BstMBI GATC 4 cut(s) 409, 448, 514, 547
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 620
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 145, 208, 211
BstV2I GAAGAC 2 cut(s) 312, 443
BstX2I RGATCY 2 cut(s) 409, 514
BstYI RGATCY 2 cut(s) 409, 514
BtsCI GGATG 2 cut(s) 238, 631
Cac8I GCNNGC 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 602
Cfr13I GGNCC 3 cut(s) 63, 366, 498
Csp6I GTAC 1 cut(s) 21
CviAII CATG 3 cut(s) 238, 371, 617
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 74, 504
DpnI GATC 4 cut(s) 411, 450, 516, 549
DpnII GATC 4 cut(s) 409, 448, 514, 547
Eam1104I CTCTTC 2 cut(s) 480, 632
EarI CTCTTC 2 cut(s) 480, 632
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 621, 666
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 3 cut(s) 63, 366, 498
Eco57I CTGAAG 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 366, 498
EcoT14I CCWWGG 2 cut(s) 621, 666
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 621, 666
FaeI CATG 3 cut(s) 241, 374, 620
FaiI YATR 5 cut(s) 230, 239, 372, 618, 728
FaqI GGGAC 2 cut(s) 282, 352
FatI CATG 3 cut(s) 237, 370, 616
Fnu4HI GCNGC 5 cut(s) 54, 57, 159, 222, 225
FokI GGATG 2 cut(s) 245, 638
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 5 cut(s) 54, 57, 159, 222, 225
FspBI CTAG 2 cut(s) 396, 456
GluI GCNGC 5 cut(s) 54, 57, 159, 222, 225
GsaI CCCAGC 2 cut(s) 171, 565
GsuI CTGGAG 4 cut(s) 121, 324, 579, 603
HapII CCGG 1 cut(s) 66
Hin1II CATG 3 cut(s) 241, 374, 620
HinfI GANTC 3 cut(s) 340, 542, 599
HpaII CCGG 1 cut(s) 66
HphI GGTGA 4 cut(s) 100, 196, 599, 659
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 5 cut(s) 339, 505, 519, 547, 636
Hpy188III TCNNGA 5 cut(s) 138, 303, 446, 582, 596
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 2 cut(s) 15, 740
HpyAV CCTTC 4 cut(s) 10, 56, 106, 637
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 74, 504
Hsp92II CATG 3 cut(s) 241, 374, 620
KflI GGGWCCC 1 cut(s) 366
Kzo9I GATC 4 cut(s) 409, 448, 514, 547
LmnI GCTCC 2 cut(s) 305, 598
Lsp1109I GCAGC 3 cut(s) 145, 208, 211
MaeI CTAG 2 cut(s) 396, 456
MalI GATC 4 cut(s) 411, 450, 516, 549
MbiI CCGCTC 1 cut(s) 474
MboI GATC 4 cut(s) 409, 448, 514, 547
MboII GAAGA 7 cut(s) 291, 312, 448, 497, 551, 581, 649
MflI RGATCY 2 cut(s) 409, 514
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 187, 652
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 8 cut(s) 26, 54, 271, 453, 511, 578, 633, 652
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 1 cut(s) 66
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 4 cut(s) 409, 448, 514, 547
NheI GCTAGC 1 cut(s) 455
NlaIII CATG 3 cut(s) 241, 374, 620
NlaIV GGNNCC 3 cut(s) 367, 368, 675
NspI RCATGY 1 cut(s) 620
PfeI GAWTC 2 cut(s) 542, 599
PkrI GCNGC 5 cut(s) 55, 58, 160, 223, 226
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 2 cut(s) 366, 498
Psp5II RGGWCCY 2 cut(s) 366, 498
PspFI CCCAGC 2 cut(s) 167, 561
PspN4I GGNNCC 3 cut(s) 367, 368, 675
PspPI GGNCC 3 cut(s) 63, 366, 498
PspPPI RGGWCCY 2 cut(s) 366, 498
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 2 cut(s) 409, 514
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 5 cut(s) 54, 57, 159, 222, 225
Sau3AI GATC 4 cut(s) 409, 448, 514, 547
Sau96I GGNCC 3 cut(s) 63, 366, 498
SchI GAGTC 1 cut(s) 334
SduI GDGCHC 1 cut(s) 292
SinI GGWCC 3 cut(s) 63, 366, 498
Sse9I AATT 2 cut(s) 187, 652
SsiI CCGC 6 cut(s) 30, 53, 56, 344, 407, 472
SspMI CTAG 2 cut(s) 396, 456
StyI CCWWGG 2 cut(s) 621, 666
TaqI TCGA 1 cut(s) 10
TaqII GACCGA 1 cut(s) 301
TasI AATT 2 cut(s) 187, 652
TauI GCSGC 2 cut(s) 56, 59
TfiI GAWTC 2 cut(s) 542, 599
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 3 cut(s) 158, 221, 224
TspDTI ATGAA 6 cut(s) 254, 480, 552, 627, 642, 684
TspGWI ACGGA 2 cut(s) 28, 191
VpaK11BI GGWCC 3 cut(s) 63, 366, 498
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 620
XspI CTAG 2 cut(s) 396, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.