Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012348

Physical Location & Seq

Genomic Coordinates Reverse (-)

2186784 .. 2188842

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G019900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGAAATCCACAGAAGTCGAGTAGTTGGAGCCAAAATCTTCATACAGCGGCAAGGTCCGGTGATCTAACTGCAGTACAGTCAATTCTCAGCTCCAATCCTTTGGCCGTCAATTCTAGAGATAAGCACTCCAGAACTCCACTACATTTAGCAGCATGGTCTGGGCAAACAGAGGTGGTGAATTTTCTGTGTAGCCACAAGGCTGATGTTGGTGCTGCTGCTATGGACGACATGGGTGCTATACACTTTGCTGCCCAAAAGGGACATTTAGAGGTTGTTCGCACTCTCCTTTTATCTGGGGCTTCTGTCAAAGCTTACACTCGTAAAGGCCTCACTCCACTGCATTATGCTGTTCAAGGGGCCCATGTAGAGCTTATCAAGTATTTGGTAAAGAAAGGTGCAAATCTCAGTGCGAAGACAAAAGCAGGGAAGACCCCTCTTGATCTTGCTAGCAGTGACGAAGTCCGCTCGTGTTTGAAAGAGTGTGAAAGGTCATCTGAGAAAGGAGGTCTGAATGAAAAACAGAAAGATGAAGAATCTGATCCAAAGACATCCCTGCAGGAAGAAGTGAAATCGGAAGGTGAAGCTGCAAATTCTGGGAATGATAAACCGGCTGAAGATGAAAGTCTGAAGAGGAAGGCAGAAAAAGATGATTCTGAGGAAGCGTCAGGGGAACGGAAAAAGCCACGAGTTGTATTGAATCATCTTCTAAGTGCTGATGATACGCAAGACGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5

Protein Analysis

247

Amino Acids

26.54

Weight (kDa)

6.16

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19150 AT4G19150
fragaria_vesca	FvH4_5g24000
prunus_persica	Prupe.5G019900_v2.0.a1
pyrus_communis	pycom06g01270
rosa_chinensis	RchiOBHm_Chr7g0213461
rosa_laevigata	RLG00000002802 RLG00000007782
rosa_multiflora	Rmu_co8493477.1_g000002 Rmu_sc0004455.1_g000006 Rmu_sc0013012.1_g000011
rosa_roxburghii	Rroxscaffold_3G00245860
rosa_rugosa	Rorug07G0142400
rosa_samantha	Rh4BG226300 Rh7AG274500 Rh7BG270000 Rh7CG293700 Rh7DG282000
rosa_wichuraiana	Rw7G023810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	468
AciI	CCGC	2 cut(s)	50, 466
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	181, 592
AcuI	CTGAAG	2 cut(s)	636, 650
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	356, 478, 700
AluBI	AGCT	4 cut(s)	93, 314, 373, 587
AluI	AGCT	4 cut(s)	93, 314, 373, 587
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	3 cut(s)	105, 328, 360
ApaI	GGGCCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	152, 215, 218, 251, 587
ApoI	RAATTY	2 cut(s)	181, 592
AspS9I	GGNCC	3 cut(s)	57, 360, 361
AsuHPI	GGTGA	3 cut(s)	74, 190, 593
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	364
BauI	CACGAG	2 cut(s)	469, 687
BbsI	GAAGAC	2 cut(s)	422, 437
BbvI	GCAGC	5 cut(s)	164, 202, 205, 238, 574
BceAI	ACGGC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BfaI	CTAG	2 cut(s)	117, 450
BfmI	CTRYAG	2 cut(s)	72, 557
BisI	GCNGC	6 cut(s)	51, 153, 216, 219, 252, 588
BlsI	GCNGC	6 cut(s)	52, 154, 217, 220, 253, 589
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	57, 360, 361
BmiI	GGNNCC	3 cut(s)	32, 361, 362
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	2 cut(s)	422, 437
BpmI	CTGGAG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	610
BseGI	GGATG	1 cut(s)	551
BseMII	CTCAG	4 cut(s)	103, 421, 489, 648
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	5 cut(s)	164, 202, 205, 238, 574
BshFI	GGCC	3 cut(s)	107, 330, 362
BsiSI	CCGG	2 cut(s)	60, 611
BslFI	GGGAC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	107, 330, 362
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	64, 442, 541
BspACI	CCGC	2 cut(s)	50, 466
BspANI	GGCC	3 cut(s)	107, 330, 362
BspCNI	CTCAG	4 cut(s)	102, 420, 490, 649
BspLI	GGNNCC	3 cut(s)	32, 361, 362
BspMAI	CTGCAG	2 cut(s)	76, 561
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	610
BssMI	GATC	3 cut(s)	64, 442, 541
BssSI	CACGAG	2 cut(s)	469, 687
Bst2BI	CACGAG	2 cut(s)	469, 687
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	626
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	5 cut(s)	89, 407, 498, 657, 710
BstF5I	GGATG	1 cut(s)	551
BstKTI	GATC	3 cut(s)	67, 445, 544
BstMBI	GATC	3 cut(s)	64, 442, 541
BstSFI	CTRYAG	2 cut(s)	72, 557
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	5 cut(s)	164, 202, 205, 238, 574
BstV2I	GAAGAC	2 cut(s)	422, 437
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	107, 330, 362
BtsCI	GGATG	1 cut(s)	551
BtsI	GCAGTG	2 cut(s)	338, 460
BtsIMutI	CAGTG	3 cut(s)	338, 415, 460
Cac8I	GCNNGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	3 cut(s)	57, 360, 361
CseI	GACGC	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	156, 232, 365
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	5 cut(s)	89, 407, 498, 657, 710
DpnI	GATC	3 cut(s)	66, 444, 543
DpnII	GATC	3 cut(s)	64, 442, 541
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	636, 650
EcoO109I	RGGNCCY	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	3 cut(s)	159, 235, 368
FaiI	YATR	7 cut(s)	45, 157, 224, 233, 242, 348, 366
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	3 cut(s)	155, 231, 364
Fnu4HI	GCNGC	6 cut(s)	51, 153, 216, 219, 252, 588
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	6 cut(s)	51, 153, 216, 219, 252, 588
FspBI	CTAG	2 cut(s)	117, 450
GluI	GCNGC	6 cut(s)	51, 153, 216, 219, 252, 588
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	107, 330, 362
HapII	CCGG	2 cut(s)	60, 611
HgaI	GACGC	1 cut(s)	654
Hin1II	CATG	3 cut(s)	159, 235, 368
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	3 cut(s)	536, 653, 700
HpaII	CCGG	2 cut(s)	60, 611
HphI	GGTGA	3 cut(s)	74, 190, 593
Hpy188I	TCNGA	6 cut(s)	499, 513, 541, 577, 630, 658
Hpy188III	TCNNGA	3 cut(s)	117, 132, 440
HpyAV	CCTTC	2 cut(s)	572, 631
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	74, 343, 401, 559, 590
HpyF3I	CTNAG	5 cut(s)	89, 407, 498, 657, 710
Hsp92II	CATG	3 cut(s)	159, 235, 368
Kzo9I	GATC	3 cut(s)	64, 442, 541
LmnI	GCTCC	2 cut(s)	30, 98
Lsp1109I	GCAGC	5 cut(s)	164, 202, 205, 238, 574
MaeI	CTAG	2 cut(s)	117, 450
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	66, 444, 543
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	3 cut(s)	64, 442, 541
MboII	GAAGA	8 cut(s)	32, 427, 442, 545, 575, 629, 643, 698
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	84, 112, 181, 592
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	8 cut(s)	166, 265, 341, 447, 500, 627, 652, 727
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	60, 611
NdeII	GATC	3 cut(s)	64, 442, 541
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	3 cut(s)	159, 235, 368
NlaIV	GGNNCC	3 cut(s)	32, 361, 362
NmuCI	GTSAC	1 cut(s)	455
PceI	AGGCCT	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	536, 653, 700
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	6 cut(s)	52, 154, 217, 220, 253, 589
PspN4I	GGNNCC	3 cut(s)	32, 361, 362
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	3 cut(s)	57, 360, 361
PstI	CTGCAG	2 cut(s)	76, 561
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SatI	GCNGC	6 cut(s)	51, 153, 216, 219, 252, 588
Sau3AI	GATC	3 cut(s)	64, 442, 541
Sau96I	GGNCC	3 cut(s)	57, 360, 361
SbfI	CCTGCAGG	1 cut(s)	561
SdaI	CCTGCAGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	364
SfcI	CTRYAG	2 cut(s)	72, 557
SinI	GGWCC	1 cut(s)	57
Sse8387I	CCTGCAGG	1 cut(s)	561
Sse9I	AATT	4 cut(s)	84, 112, 181, 592
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	50, 466
SspMI	CTAG	2 cut(s)	117, 450
StuI	AGGCCT	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	84, 112, 181, 592
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	536, 653, 700
TscAI	CASTG	3 cut(s)	345, 415, 460
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	5 cut(s)	152, 215, 218, 251, 587
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	32, 531, 546, 636
TspGWI	ACGGA	1 cut(s)	691
TspRI	CASTG	3 cut(s)	345, 415, 460
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	181, 592
XbaI	TCTAGA	1 cut(s)	116
XspI	CTAG	2 cut(s)	117, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.