Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Reverse (-)

10713410 .. 10714745

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGTTCAAGCTCATCACATGAACATTTTCTCTCAGTTTATATCACCAAACAGAGATTGTGTTAAATTTCAAGAAAACATGAACCACGGCGAGTTTGAGTTTACCGGCGGTGAAGTTCCGTTAATAACCGGAGAATCTTTCGCCGTTGAGCCTTTAGCTGCGAAAGCCAACTTCAACAAAGCAGAAAGTGGTCTCAGTTACAATTTCACTGTTCCTCCTCTGTCTACAAAACGCCAGCGAGATTTTCAATTCTCAGACTCAAACGCTCCGGTTAAACGGAGGTCCGTAGCGTTTGACTCATCATCACCGTCGTTGATAAACGTTGAACTCGTATCTCAGATTCAAAACCAACAACAGTCAGAGATCGATAGGTTCGTAGCTCAGCAAACGGAGAAGCTAAGAATAGAGATTGAAGCAAGGCAACAAACGCAAACGCGGATGTTAGCGTCTGCGGTTCAAAACGTTATAGCCAAGAAACTAAAAGAGAAAGACGATGAAATCGTACGGATTCGAAACCTAAACTGGGTTTTACAAGAGAGGGTGAAGAGTCTTTACGTCGAAAATCAGATTTGGCGTGATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGAACAAACCTAGACCAAGTTCTTGCTCAACTCGAAACGTTTCCAACCGCTTCAGCCGTTGTAGAAGACGATGCGGAATCGAGTTGTGGAAGTTGTTGCGGTGATGGTGGTGGTGAAGCGGTAACGGCGGTTGGTGGTGGTTGTAAACGGTGCGGTGAGAGAGAAGCGAGTGTGTTGGTGTTACCATGTCGTCATTTGTGTTTGTGTACGGTTTGTGGTGGTTCGGCTTTGTTACGGACTTGTCCGGTTTGCGATATGGTCATGAACGCTAGTGTGCATGTTAACATGTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

304

Amino Acids

33.51

Weight (kDa)

5.51

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	254 - 293	1.3e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	439
AciI	CCGC	9 cut(s)	111, 439, 455, 666, 692, 717, 737, 746, 771
AclI	AACGTT	3 cut(s)	324, 465, 656
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	507, 826
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	8 cut(s)	11, 74, 178, 251, 329, 347, 416, 461
AluBI	AGCT	4 cut(s)	14, 161, 383, 400
AluI	AGCT	4 cut(s)	14, 161, 383, 400
Alw26I	GTCTC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	2 cut(s)	29, 657
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	7 cut(s)	39, 125, 300, 556, 731, 743, 785
AsuII	TTCGAA	2 cut(s)	514, 619
AvaII	GGWCC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbsI	GAAGAC	2 cut(s)	690, 900
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	716
BceAI	ACGGC	4 cut(s)	106, 131, 659, 759
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	2 cut(s)	629, 888
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	679
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	690, 900
Bpu1102I	GCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	2 cut(s)	514, 619
Bsa29I	ATCGAT	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	3 cut(s)	131, 271, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	5 cut(s)	50, 211, 270, 353, 398
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	369
BsiSI	CCGG	4 cut(s)	108, 132, 272, 863
BsiWI	CGTACG	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmAI	GTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	200
Bsp119I	TTCGAA	2 cut(s)	514, 619
Bsp143I	GATC	1 cut(s)	366
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	9 cut(s)	111, 439, 455, 666, 692, 717, 737, 746, 771
BspCNI	CTCAG	5 cut(s)	49, 210, 269, 352, 397
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	879
BspT104I	TTCGAA	2 cut(s)	514, 619
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	366
Bst4CI	ACNGT	5 cut(s)	214, 312, 360, 768, 829
Bst6I	CTCTTC	2 cut(s)	542, 621
BstBI	TTCGAA	2 cut(s)	514, 619
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	6 cut(s)	36, 197, 256, 339, 384, 401
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	439
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 167, 430, 743
BstNSI	RCATGY	2 cut(s)	899, 907
BstUI	CGCG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	690, 900
Bsu15I	ATCGAT	1 cut(s)	369
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	239
CciI	TCATGA	1 cut(s)	879
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	506, 825
CviAII	CATG	6 cut(s)	22, 82, 804, 880, 896, 904
CviQI	GTAC	2 cut(s)	506, 825
DdeI	CTNAG	6 cut(s)	36, 197, 256, 339, 384, 401
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	542, 621
EarI	CTCTTC	2 cut(s)	542, 621
Eco31I	GGTCTC	1 cut(s)	200
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	654
EcoRV	GATATC	1 cut(s)	583
FaeI	CATG	6 cut(s)	25, 85, 807, 883, 899, 907
FaiI	YATR	9 cut(s)	23, 44, 83, 470, 805, 875, 881, 897, 905
FatI	CATG	6 cut(s)	21, 81, 803, 879, 895, 903
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	629, 888
GluI	GCNGC	1 cut(s)	162
HapII	CCGG	4 cut(s)	108, 132, 272, 863
HgaI	GACGC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	25, 85, 807, 883, 899, 907
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HinfI	GANTC	7 cut(s)	137, 260, 299, 343, 511, 550, 695
HpaI	GTTAAC	1 cut(s)	901
HpaII	CCGG	4 cut(s)	108, 132, 272, 863
HphI	GGTGA	7 cut(s)	39, 125, 300, 556, 731, 743, 785
Hpy166II	GTNNAC	5 cut(s)	105, 228, 764, 825, 901
Hpy188I	TCNGA	4 cut(s)	259, 342, 364, 570
Hpy188III	TCNNGA	3 cut(s)	74, 880, 912
Hpy8I	GTNNAC	5 cut(s)	105, 228, 764, 825, 901
Hpy99I	CGWCG	2 cut(s)	316, 563
HpyCH4III	ACNGT	5 cut(s)	214, 312, 360, 768, 829
HpyCH4IV	ACGT	4 cut(s)	324, 465, 558, 656
HpyCH4V	TGCA	1 cut(s)	895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 167, 430, 743
HpyF3I	CTNAG	6 cut(s)	36, 197, 256, 339, 384, 401
HpySE526I	ACGT	4 cut(s)	324, 465, 558, 656
Hsp92II	CATG	6 cut(s)	25, 85, 807, 883, 899, 907
KspAI	GTTAAC	1 cut(s)	901
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	121, 145, 251, 285, 511, 876
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	2 cut(s)	629, 888
MaeII	ACGT	4 cut(s)	324, 465, 558, 656
MaeIII	GTNAC	4 cut(s)	200, 739, 798, 849
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	4 cut(s)	559, 608, 695, 900
MluCI	AATT	3 cut(s)	68, 205, 251
MlyI	GAGTC	3 cut(s)	254, 293, 559
MmeI	TCCRAC	1 cut(s)	686
MnlI	CCTC	4 cut(s)	228, 231, 276, 534
MroXI	GAANNNNTTC	2 cut(s)	29, 657
MseI	TTAA	4 cut(s)	66, 125, 276, 900
MspI	CCGG	4 cut(s)	108, 132, 272, 863
MvnI	CGCG	1 cut(s)	439
MwoI	GCNNNNNNNGC	4 cut(s)	11, 167, 430, 743
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	6 cut(s)	25, 85, 807, 883, 899, 907
NspI	RCATGY	2 cut(s)	899, 907
NspV	TTCGAA	2 cut(s)	514, 619
PagI	TCATGA	1 cut(s)	879
PciI	ACATGT	1 cut(s)	903
PcsI	WCGNNNNNNNCGW	3 cut(s)	330, 375, 501
PdmI	GAANNNNTTC	2 cut(s)	29, 657
PfeI	GAWTC	4 cut(s)	137, 343, 511, 695
Pfl23II	CGTACG	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	3 cut(s)	254, 293, 558
PpsI	GAGTC	3 cut(s)	254, 293, 558
PscI	ACATGT	1 cut(s)	903
Psp1406I	AACGTT	3 cut(s)	324, 465, 656
PspLI	CGTACG	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	285
RsaI	GTAC	2 cut(s)	507, 826
RsaNI	GTAC	2 cut(s)	506, 825
SaqAI	TTAA	4 cut(s)	66, 125, 276, 900
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	285
SchI	GAGTC	3 cut(s)	254, 293, 559
SfaNI	GCATC	1 cut(s)	679
SfuI	TTCGAA	2 cut(s)	514, 619
SinI	GGWCC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	68, 205, 251
SsiI	CCGC	9 cut(s)	111, 439, 455, 666, 692, 717, 737, 746, 771
SspMI	CTAG	2 cut(s)	629, 888
TaaI	ACNGT	5 cut(s)	214, 312, 360, 768, 829
TaiI	ACGT	4 cut(s)	327, 468, 561, 659
TaqI	TCGA	6 cut(s)	369, 514, 561, 619, 651, 698
TasI	AATT	3 cut(s)	68, 205, 251
TfiI	GAWTC	4 cut(s)	137, 343, 511, 695
Tru1I	TTAA	4 cut(s)	66, 125, 276, 900
Tru9I	TTAA	4 cut(s)	66, 125, 276, 900
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	38, 98, 513, 896
TspGWI	ACGGA	6 cut(s)	111, 277, 295, 407, 523, 868
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	2 cut(s)	899, 907
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	29, 657
XspI	CTAG	2 cut(s)	629, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.