Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Reverse (-)

5678591 .. 5680417

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCAGTTGAAGCTCAGCACCTCCACCATGCGGCTCTTATCCCATCTCAGTTAATTCCAAATAGAGATTTCATCAAAACCAACCAAGGAAACGCCAATATTTACAGTACACAAATGGACTCTGGCCTGATTTTGTCCGCAACAATGCCTGAAAATCTGCTTCCCATGTACCAATCGCCTTTCTGTGAAGCAAATAAAGCTTCGATGAACAAGCAGGCGGAGAGTGGTCTCACATACAACAACATATCTGCTCCTAGAAAGCGGCCTAGAGACCAATTGATCAACGACTTCAACAATTTCTCAGTCCCTCAGAAGACCAAAATGTCCGTTGGTGCCTCATCTTTTATCGACCAAGACATTGCCTTTCAGATCCAACAACAGCAATCTGAGATCGATCGCTTCATCGCCCAACATACTGAGAAAGTGAGAATGGAACTCGAAGAGCAAAGAAAGCAGCAATCGAGATTGTTAGTGTCGGCAATCCAGGAGAGAATCGTGAAGAAACTGAAGGAGAAAGACGAGGAGATACAGAGGATGGGGAAGCTCAATTGGGTCCTTCAAGAGCGAGTCAAAAGCCTATTCGTTGAGAACCAAATATGGAGAGACATGGCGCAGACAAACGAAGCCGCGGCCAATTCTCTACGCACCAATTTAGAGCAAGTCCTGGCGCACGTTAGCGAGGAGCACCAAGCTGGTGGCGGCCCCCCAGCCGCCGCGGTGGCAGACGATGCGCAATCGAGCTGCGGCAGCAACGATTACGGGCGGGATGAAGAGGCGGTTGATGGTGGTGATGCGGTGGTTGGAGGCGGCGGAAACGGTGGTTGTGGTGGTGGCGATAGGATGTGTAAGAGGTGTGGGGTGAGGGAGTCAAGGGTGTTGTTACTGCCATGCAGGCATTTGTGCCTGTGTACAATGTGTGGGTCCACCCTTCTCAATTGCCCTGTATGTAACTCTGTCATGAATGCCAGTGTGCATGTTAATTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

330

Amino Acids

36.28

Weight (kDa)

6.09

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	322
Acc16I	TGCGCA	1 cut(s)	732
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	2 cut(s)	629, 716
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	630
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	3 cut(s)	109, 170, 910
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	11, 292, 560
AjnI	CCWGG	2 cut(s)	483, 663
AluBI	AGCT	5 cut(s)	14, 200, 544, 692, 741
AluI	AGCT	5 cut(s)	14, 200, 544, 692, 741
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	3 cut(s)	233, 264, 597
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	4 cut(s)	124, 263, 630, 700
ApeKI	GCWGC	3 cut(s)	454, 741, 747
AspLEI	GCGC	3 cut(s)	613, 670, 733
AspS9I	GGNCC	3 cut(s)	553, 701, 921
AsuHPI	GGTGA	2 cut(s)	800, 871
AvaII	GGWCC	2 cut(s)	553, 921
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	466, 728, 759
BccI	CCATC	3 cut(s)	52, 529, 776
BciT130I	CCWGG	2 cut(s)	485, 665
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	233, 264, 597
BfaI	CTAG	2 cut(s)	255, 267
BglI	GCCNNNNNGGC	2 cut(s)	719, 892
BlpI	GCTNAGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	485, 665
Bme18I	GGWCC	2 cut(s)	553, 921
BmgT120I	GGNCC	3 cut(s)	553, 701, 921
BmiI	GGNNCC	4 cut(s)	334, 554, 703, 922
BmrFI	CCNGG	2 cut(s)	485, 665
BmsI	GCATC	2 cut(s)	718, 781
BpiI	GAAGAC	1 cut(s)	320
Bpu1102I	GCTNAGC	1 cut(s)	15
Bsa29I	ATCGAT	1 cut(s)	393
BsaI	GGTCTC	2 cut(s)	233, 264
BsaJI	CCNNGG	3 cut(s)	85, 627, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	485, 665
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	85, 627, 714
BseGI	GGATG	3 cut(s)	540, 772, 846
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	6 cut(s)	29, 62, 315, 323, 378, 408
BseNI	ACTGG	1 cut(s)	966
BseRI	GAGGAG	2 cut(s)	536, 695
BseXI	GCAGC	3 cut(s)	466, 728, 759
BseYI	CCCAGC	1 cut(s)	706
Bsh1236I	CGCG	2 cut(s)	629, 716
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	4 cut(s)	126, 265, 632, 702
BshNI	GGYRCC	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	233, 264, 597
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	967
BsnI	GGCC	4 cut(s)	126, 265, 632, 702
Bso31I	GGTCTC	2 cut(s)	233, 264
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	908
Bsp143I	GATC	4 cut(s)	279, 369, 390, 394
Bsp1720I	GCTNAGC	1 cut(s)	15
BspANI	GGCC	4 cut(s)	126, 265, 632, 702
BspCNI	CTCAG	6 cut(s)	28, 61, 314, 322, 379, 409
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	629, 716
BspHI	TCATGA	1 cut(s)	957
BspLI	GGNNCC	4 cut(s)	334, 554, 703, 922
BspPI	GGATC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	2 cut(s)	233, 264
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	908
BsrI	ACTGG	1 cut(s)	966
BssECI	CCNNGG	3 cut(s)	85, 627, 714
BssMI	GATC	4 cut(s)	279, 369, 390, 394
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	485, 665
Bst4CI	ACNGT	2 cut(s)	107, 818
Bst6I	CTCTTC	2 cut(s)	435, 765
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstAUI	TGTACA	1 cut(s)	908
BstC8I	GCNNGC	2 cut(s)	216, 893
BstDEI	CTNAG	7 cut(s)	15, 48, 301, 309, 387, 417, 987
BstDSI	CCRYGG	2 cut(s)	627, 714
BstF5I	GGATG	3 cut(s)	540, 772, 846
BstFNI	CGCG	2 cut(s)	629, 716
BstHHI	GCGC	3 cut(s)	613, 670, 733
BstKTI	GATC	4 cut(s)	282, 372, 393, 397
BstMAI	GTCTC	3 cut(s)	233, 264, 597
BstMBI	GATC	4 cut(s)	279, 369, 390, 394
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 197, 451, 719, 728, 747, 892
BstNI	CCWGG	2 cut(s)	485, 665
BstNSI	RCATGY	1 cut(s)	977
BstSCI	CCNGG	2 cut(s)	483, 663
BstUI	CGCG	2 cut(s)	629, 716
BstV1I	GCAGC	3 cut(s)	466, 728, 759
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	126, 265, 632, 702
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	2 cut(s)	627, 714
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	3 cut(s)	540, 772, 846
BtsIMutI	CAGTG	1 cut(s)	973
Cac8I	GCNNGC	2 cut(s)	216, 893
CciI	TCATGA	1 cut(s)	957
CfoI	GCGC	3 cut(s)	613, 670, 733
Cfr13I	GGNCC	3 cut(s)	553, 701, 921
Cfr42I	CCGCGG	2 cut(s)	630, 717
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	108, 169, 909
CviAII	CATG	6 cut(s)	29, 166, 607, 888, 958, 974
CviQI	GTAC	3 cut(s)	108, 169, 909
DdeI	CTNAG	7 cut(s)	15, 48, 301, 309, 387, 417, 987
DpnI	GATC	4 cut(s)	281, 371, 392, 396
DpnII	GATC	4 cut(s)	279, 369, 390, 394
DrdI	GACNNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	435, 765
EarI	CTCTTC	2 cut(s)	435, 765
EciI	GGCGGA	2 cut(s)	233, 825
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	2 cut(s)	233, 264
Eco47I	GGWCC	2 cut(s)	553, 921
Eco57I	CTGAAG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	483, 663
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	6 cut(s)	32, 169, 610, 891, 961, 977
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	6 cut(s)	28, 165, 606, 887, 957, 973
FauI	CCCGC	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	279
FokI	GGATG	3 cut(s)	547, 779, 853
FspBI	CTAG	2 cut(s)	255, 267
FspI	TGCGCA	1 cut(s)	732
GlaI	GCGC	3 cut(s)	612, 669, 732
GsaI	CCCAGC	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	126, 265, 632, 702
HhaI	GCGC	3 cut(s)	613, 670, 733
Hin1II	CATG	6 cut(s)	32, 169, 610, 891, 961, 977
Hin6I	GCGC	3 cut(s)	611, 668, 731
HinP1I	GCGC	3 cut(s)	611, 668, 731
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	4 cut(s)	119, 492, 567, 866
HphI	GGTGA	2 cut(s)	800, 871
Hpy166II	GTNNAC	3 cut(s)	110, 909, 924
Hpy188I	TCNGA	3 cut(s)	312, 369, 388
Hpy188III	TCNNGA	4 cut(s)	462, 496, 560, 958
Hpy8I	GTNNAC	3 cut(s)	110, 909, 924
HpyAV	CCTTC	3 cut(s)	502, 566, 938
HpyCH4III	ACNGT	2 cut(s)	107, 818
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	2 cut(s)	891, 973
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 197, 451, 719, 728, 747, 892
HpyF3I	CTNAG	7 cut(s)	15, 48, 301, 309, 387, 417, 987
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	6 cut(s)	32, 169, 610, 891, 961, 977
HspAI	GCGC	3 cut(s)	611, 668, 731
Ksp22I	TGATCA	1 cut(s)	279
KspI	CCGCGG	2 cut(s)	630, 717
Kzo9I	GATC	4 cut(s)	279, 369, 390, 394
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	256, 682
Lsp1109I	GCAGC	3 cut(s)	466, 728, 759
LweI	GCATC	2 cut(s)	718, 781
MaeI	CTAG	2 cut(s)	255, 267
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	2 cut(s)	879, 947
MalI	GATC	4 cut(s)	281, 371, 392, 396
MboI	GATC	4 cut(s)	279, 369, 390, 394
MboII	GAAGA	4 cut(s)	325, 452, 511, 782
MfeI	CAATTG	3 cut(s)	275, 547, 934
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	8 cut(s)	54, 275, 295, 547, 634, 649, 934, 979
MlyI	GAGTC	3 cut(s)	113, 576, 875
MmeI	TCCRAC	2 cut(s)	397, 781
MseI	TTAA	2 cut(s)	53, 978
MspA1I	CMGCKG	2 cut(s)	629, 716
MspR9I	CCNGG	2 cut(s)	485, 665
MunI	CAATTG	3 cut(s)	275, 547, 934
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	2 cut(s)	485, 665
MvnI	CGCG	2 cut(s)	629, 716
MwoI	GCNNNNNNNGC	7 cut(s)	11, 197, 451, 719, 728, 747, 892
NdeII	GATC	4 cut(s)	279, 369, 390, 394
NlaIII	CATG	6 cut(s)	32, 169, 610, 891, 961, 977
NlaIV	GGNNCC	4 cut(s)	334, 554, 703, 922
NsbI	TGCGCA	1 cut(s)	732
NspI	RCATGY	1 cut(s)	977
PagI	TCATGA	1 cut(s)	957
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	483
Ple19I	CGATCG	1 cut(s)	397
PleI	GAGTC	3 cut(s)	113, 575, 874
PpsI	GAGTC	3 cut(s)	113, 575, 874
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	483, 663
PspFI	CCCAGC	1 cut(s)	706
PspGI	CCWGG	2 cut(s)	483, 663
PspN4I	GGNNCC	4 cut(s)	334, 554, 703, 922
PspPI	GGNCC	3 cut(s)	553, 701, 921
PspPPI	RGGWCCY	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	369
PvuI	CGATCG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	109, 170, 910
RsaNI	GTAC	3 cut(s)	108, 169, 909
SacII	CCGCGG	2 cut(s)	630, 717
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	53, 978
Sau3AI	GATC	4 cut(s)	279, 369, 390, 394
Sau96I	GGNCC	3 cut(s)	553, 701, 921
SchI	GAGTC	3 cut(s)	113, 576, 875
ScrFI	CCNGG	2 cut(s)	485, 665
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	8 cut(s)	16, 24, 202, 546, 675, 694, 743, 854
SfaNI	GCATC	2 cut(s)	718, 781
Sfr303I	CCGCGG	2 cut(s)	630, 717
SgrBI	CCGCGG	2 cut(s)	630, 717
SinI	GGWCC	2 cut(s)	553, 921
Sse9I	AATT	8 cut(s)	54, 275, 295, 547, 634, 649, 934, 979
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	255, 267
StyD4I	CCNGG	2 cut(s)	483, 663
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	107, 818
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	6 cut(s)	203, 348, 393, 438, 461, 737
TasI	AATT	8 cut(s)	54, 275, 295, 547, 634, 649, 934, 979
TatI	WGTACW	2 cut(s)	107, 908
TauI	GCSGC	9 cut(s)	35, 265, 629, 632, 702, 713, 716, 747, 810
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	2 cut(s)	53, 978
Tru9I	TTAA	2 cut(s)	53, 978
TscAI	CASTG	1 cut(s)	973
TseI	GCWGC	3 cut(s)	454, 741, 747
TspDTI	ATGAA	5 cut(s)	61, 221, 391, 783, 974
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	1 cut(s)	973
VpaK11BI	GGWCC	2 cut(s)	553, 921
XceI	RCATGY	1 cut(s)	977
XspI	CTAG	2 cut(s)	255, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.