Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Reverse (-)

7123566 .. 7125868

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGTTGAGGCTCAGCATCATCACCCCTCTGTGTTTGTTCCATCTCAGTTGATGCCGAATAGAGATTTCATTAAGAGTAATCAAGCAAACGGCAATATGTACAATAACCAGATGGATTCCGGTCTGCTATCAATGCCGGAAAATAATCTTATGGCGTTGTATCAGTCGCACATATGTGATCAAGCTAAGACGTCGATGAACCAAGCGGAGAGTGGTCTCACATACAACAACATCATATCTGCTCCGAGAAAGAGGTCGAGAGATTCGTTCATGAATGAGTTTAACAATTTTACGGTTCCTCAGCAGAAGAAACTATCTTCCGGTCTTACGTCACCGTTTCTCGACCAAGACATTGCCTTTCAGATCCAACAGCAGCAATCGGAGATCGACCGATTCATTGCCCATCATACGGAAAAAGTGAGACTAGAACTCGAAGAACAAAGAAGACGAGAATCACGAATGTTAGTGTCGGCAATCCAAGACAGAATCGTCAAGAAACTACAAGAAAAAGATGACGAGATACAGAGGATGGGCAAGCTCAATTGGGTTCTACAAGAAAGGGTGAAGAGCCTATTCGTGGAGAATCAAATATGGAGGGACTTGGCTCAATCAAACGAAGCCGCGGCCAATTCTCTGCGCTCCAATCTAGAGCAAGTCCTAGCGCACGTCAGCGAAGAAGGGCACCACACCGGAAACTTTGGTACTGCCCCAGCTGCGCCCGAAGATGATGCAGAGTCATGTTGCGGTAGCAATGATTACGGACATGAAACCGAAGCTGAAGGGCGGTTACGGTTAGGTGGTTGCACCGACACGGTGGTTGGCGGTGGCGATAGGATGTGCAAGAGGTGTGGCGTGAGGGAGTCAAAGGTGTTGTTGCTGCCATGCAGGCATCTTTGCCTATGTACAATGTGCGGGTCCACCCTTCAGAATTGTCCAGTATGTGATTCTGTCATGAATGCCAGCGTGCATGTTAATTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

329

Amino Acids

36.9

Weight (kDa)

5.96

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	245 - 286	4.2e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	491
AatII	GACGTC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	684
AccII	CGCG	1 cut(s)	626
AciI	CCGC	8 cut(s)	5, 209, 624, 626, 747, 787, 825, 915
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	801, 911
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	3 cut(s)	104, 706, 907
AfiI	CCNNNNNNNGG	2 cut(s)	412, 580
AjiI	CACGTC	1 cut(s)	670
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	4 cut(s)	188, 541, 716, 779
AluI	AGCT	4 cut(s)	188, 541, 716, 779
Alw26I	GTCTC	2 cut(s)	224, 418
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	376, 716, 880
AspLEI	GCGC	3 cut(s)	642, 667, 721
AspS9I	GGNCC	1 cut(s)	918
AsuHPI	GGTGA	3 cut(s)	17, 327, 577
AvaII	GGWCC	1 cut(s)	918
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	684
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbsI	GAAGAC	1 cut(s)	454
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	388, 703, 867
BccI	CCATC	4 cut(s)	52, 109, 414, 526
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	224, 418
BfaI	CTAG	3 cut(s)	428, 650, 662
BglI	GCCNNNNNGGC	1 cut(s)	889
BisI	GCNGC	5 cut(s)	377, 624, 627, 717, 881
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	5 cut(s)	378, 625, 628, 718, 882
Bme18I	GGWCC	1 cut(s)	918
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	918
BmiI	GGNNCC	3 cut(s)	300, 686, 919
BmsI	GCATC	4 cut(s)	28, 45, 721, 901
BpiI	GAAGAC	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	624
BsaWI	WCCGGW	3 cut(s)	122, 323, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 580
Bse1I	ACTGG	1 cut(s)	938
Bse3DI	GCAATG	3 cut(s)	354, 399, 760
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	2 cut(s)	537, 843
BseLI	CCNNNNNNNGG	2 cut(s)	412, 580
BseMI	GCAATG	3 cut(s)	354, 399, 760
BseMII	CTCAG	3 cut(s)	29, 62, 317
BseNI	ACTGG	1 cut(s)	938
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	388, 703, 867
BseYI	CCCAGC	1 cut(s)	712
Bsh1236I	CGCG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	684
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	4 cut(s)	123, 140, 324, 693
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	412, 580
BsmAI	GTCTC	2 cut(s)	224, 418
BsmFI	GGGAC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	964
BsnI	GGCC	1 cut(s)	629
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp1407I	TGTACA	2 cut(s)	102, 905
Bsp143I	GATC	3 cut(s)	181, 366, 387
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	8 cut(s)	5, 209, 624, 626, 747, 787, 825, 915
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	3 cut(s)	28, 61, 316
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	2 cut(s)	273, 954
BspLI	GGNNCC	3 cut(s)	300, 686, 919
BspPI	GGATC	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	684
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	3 cut(s)	354, 399, 760
BsrGI	TGTACA	2 cut(s)	102, 905
BsrI	ACTGG	1 cut(s)	938
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	3 cut(s)	181, 366, 387
BssNI	GRCGYC	1 cut(s)	194
Bst4CI	ACNGT	4 cut(s)	298, 339, 795, 817
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	194
BstAUI	TGTACA	2 cut(s)	102, 905
BstC8I	GCNNGC	4 cut(s)	539, 890, 964, 968
BstDEI	CTNAG	5 cut(s)	15, 48, 189, 303, 984
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	2 cut(s)	537, 843
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	3 cut(s)	642, 667, 721
BstKTI	GATC	3 cut(s)	184, 369, 390
BstMAI	GTCTC	2 cut(s)	224, 418
BstMBI	GATC	3 cut(s)	181, 366, 387
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 136, 716, 889
BstNSI	RCATGY	1 cut(s)	974
BstSLI	GKGCMC	1 cut(s)	687
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	388, 703, 867
BstV2I	GAAGAC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	624
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	537, 843
Cac8I	GCNNGC	4 cut(s)	539, 890, 964, 968
CciI	TCATGA	2 cut(s)	273, 954
CfoI	GCGC	3 cut(s)	642, 667, 721
Cfr13I	GGNCC	1 cut(s)	918
Cfr42I	CCGCGG	1 cut(s)	627
Csp6I	GTAC	3 cut(s)	103, 705, 906
CspCI	CAANNNNNGTGG	2 cut(s)	832, 867
CviAII	CATG	6 cut(s)	274, 741, 767, 885, 955, 971
CviJI	RGCY	9 cut(s)	14, 188, 541, 573, 608, 623, 629, 716, 779
CviKI_1	RGCY	9 cut(s)	14, 188, 541, 573, 608, 623, 629, 716, 779
CviQI	GTAC	3 cut(s)	103, 705, 906
DdeI	CTNAG	5 cut(s)	15, 48, 189, 303, 984
DpnI	GATC	3 cut(s)	183, 368, 389
DpnII	GATC	3 cut(s)	181, 366, 387
DrdI	GACNNNNNNGTC	1 cut(s)	491
DseDI	GACNNNNNNGTC	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	918
Eco57I	CTGAAG	2 cut(s)	801, 911
FaeI	CATG	6 cut(s)	277, 744, 770, 888, 958, 974
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	6 cut(s)	273, 740, 766, 884, 954, 970
FauI	CCCGC	1 cut(s)	908
FauNDI	CATATG	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	377, 624, 627, 717, 881
FokI	GGATG	2 cut(s)	544, 850
Fsp4HI	GCNGC	5 cut(s)	377, 624, 627, 717, 881
FspBI	CTAG	3 cut(s)	428, 650, 662
GlaI	GCGC	3 cut(s)	641, 666, 720
GluI	GCNGC	5 cut(s)	377, 624, 627, 717, 881
GsaI	CCCAGC	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	4 cut(s)	123, 140, 324, 693
HhaI	GCGC	3 cut(s)	642, 667, 721
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	6 cut(s)	277, 744, 770, 888, 958, 974
Hin6I	GCGC	3 cut(s)	640, 665, 719
HinP1I	GCGC	3 cut(s)	640, 665, 719
HinfI	GANTC	9 cut(s)	119, 266, 396, 455, 489, 586, 737, 863, 947
HpaII	CCGG	4 cut(s)	123, 140, 324, 693
HphI	GGTGA	3 cut(s)	17, 327, 577
Hpy166II	GTNNAC	1 cut(s)	921
Hpy188I	TCNGA	4 cut(s)	249, 366, 385, 930
Hpy188III	TCNNGA	7 cut(s)	261, 274, 344, 459, 496, 650, 955
Hpy8I	GTNNAC	1 cut(s)	921
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	674, 776, 935
HpyCH4III	ACNGT	4 cut(s)	298, 339, 795, 817
HpyCH4IV	ACGT	3 cut(s)	194, 332, 669
HpyCH4V	TGCA	5 cut(s)	734, 807, 843, 888, 970
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 136, 716, 889
HpyF3I	CTNAG	5 cut(s)	15, 48, 189, 303, 984
HpySE526I	ACGT	3 cut(s)	194, 332, 669
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	6 cut(s)	277, 744, 770, 888, 958, 974
HspAI	GCGC	3 cut(s)	640, 665, 719
Ksp22I	TGATCA	1 cut(s)	181
KspI	CCGCGG	1 cut(s)	627
Kzo9I	GATC	3 cut(s)	181, 366, 387
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	2 cut(s)	250, 647
LpnPI	CCDG	9 cut(s)	125, 136, 153, 337, 706, 726, 874, 951, 976
Lsp1109I	GCAGC	3 cut(s)	388, 703, 867
LweI	GCATC	4 cut(s)	28, 45, 721, 901
MaeI	CTAG	3 cut(s)	428, 650, 662
MaeII	ACGT	3 cut(s)	194, 332, 669
MaeIII	GTNAC	2 cut(s)	333, 789
MalI	GATC	3 cut(s)	183, 368, 389
MboI	GATC	3 cut(s)	181, 366, 387
MboII	GAAGA	7 cut(s)	312, 322, 449, 459, 580, 689, 737
MfeI	CAATTG	1 cut(s)	544
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	5 cut(s)	289, 544, 631, 931, 976
MlyI	GAGTC	2 cut(s)	746, 872
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	8 cut(s)	4, 40, 249, 312, 522, 591, 840, 852
MseI	TTAA	3 cut(s)	75, 285, 975
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	2 cut(s)	626, 716
MspI	CCGG	4 cut(s)	123, 140, 324, 693
MunI	CAATTG	1 cut(s)	544
Mva1269I	GAATGC	1 cut(s)	964
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	4 cut(s)	11, 136, 716, 889
NdeI	CATATG	1 cut(s)	176
NdeII	GATC	3 cut(s)	181, 366, 387
NlaIII	CATG	6 cut(s)	277, 744, 770, 888, 958, 974
NlaIV	GGNNCC	3 cut(s)	300, 686, 919
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	974
OliI	CACNNNNGTG	1 cut(s)	177
PagI	TCATGA	2 cut(s)	273, 954
PciSI	GCTCTTC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	2 cut(s)	266, 457
PctI	GAATGC	1 cut(s)	964
PfeI	GAWTC	7 cut(s)	119, 266, 396, 455, 489, 586, 947
PkrI	GCNGC	5 cut(s)	378, 625, 628, 718, 882
PleI	GAGTC	2 cut(s)	745, 871
PpsI	GAGTC	2 cut(s)	745, 871
PspFI	CCCAGC	1 cut(s)	712
PspN4I	GGNNCC	3 cut(s)	300, 686, 919
PspPI	GGNCC	1 cut(s)	918
PsuI	RGATCY	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	104, 706, 907
RsaNI	GTAC	3 cut(s)	103, 705, 906
RseI	CAYNNNNRTG	1 cut(s)	177
SacII	CCGCGG	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	75, 285, 975
SatI	GCNGC	5 cut(s)	377, 624, 627, 717, 881
Sau3AI	GATC	3 cut(s)	181, 366, 387
Sau96I	GGNCC	1 cut(s)	918
SchI	GAGTC	2 cut(s)	746, 872
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	4 cut(s)	28, 45, 721, 901
Sfr303I	CCGCGG	1 cut(s)	627
SgrBI	CCGCGG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	918
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	289, 544, 631, 931, 976
SsiI	CCGC	8 cut(s)	5, 209, 624, 626, 747, 787, 825, 915
SspMI	CTAG	3 cut(s)	428, 650, 662
TaaI	ACNGT	4 cut(s)	298, 339, 795, 817
TaiI	ACGT	3 cut(s)	197, 335, 672
TaqI	TCGA	5 cut(s)	197, 260, 345, 390, 435
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	5 cut(s)	289, 544, 631, 931, 976
TatI	WGTACW	2 cut(s)	102, 905
TauI	GCSGC	2 cut(s)	626, 629
TfiI	GAWTC	7 cut(s)	119, 266, 396, 455, 489, 586, 947
Tru1I	TTAA	3 cut(s)	75, 285, 975
Tru9I	TTAA	3 cut(s)	75, 285, 975
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	3 cut(s)	376, 716, 880
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	7 cut(s)	61, 215, 262, 290, 388, 783, 971
TspGWI	ACGGA	2 cut(s)	428, 777
VpaK11BI	GGWCC	1 cut(s)	918
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XspI	CTAG	3 cut(s)	428, 650, 662
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.