Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Forward (+)

18218586 .. 18220047

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G45100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTGTTGAAGCAAGACACATGAATCTCTTCTCTTCTCAATACATTACCAACAGAGAATGTGTTAAATCTCAAACGAATATGAACAACGGACAACAAATCGCCGGCGGTGGTTTTCCGGTAACAATCGGTGATCGGAATTTACAGTACATAGATCCGATTAACAGCTTCAACAAATCAGAAAGCGAGCTCACAGCTATTTCAAAACGTCAGAGAGATTCAACGTTTGATTCAGACGCTTTAATCGCATCTCAGAAACGCAGAGCAATCGCGTTTTCTCCGGCGTCATTAATCGACGCAGAGTTAGTTTCACAGATCCAACAGCAAAACTCAGAAATCGATAGATTCGTAGCGCAACAAACGGAAACGTTGAGAATCGAATTAGAAGCGAGACAAAGAACGCAAACGCGGATGTTAGCGTCAGCGGTACAAAACGCGATATTGAAAAAGCTGAAAGCGAAAGACGAAGAGATTATAAGAATGGGGAAATTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTAGAGAATCAGATCTGGCGTGATTTAGCACAAACTAATGAAGCTACTGCGAATAATCTCAGATCAAATCTCGAACAAGTTTTGGCTCAAGTTGATGATTTAGATGCGTTTCGTCGTCCTTTGGTTGAAGAAGCTGATGATGCAGAATCTAGCTGTGGAAGCTGTGACGGAGGTGATGTAACGGCGGTTGTTAACGGAGGATGTAAACGGTGCGGTGAGTTAACGGCGAGTGTGTTGGTGTTGCCTTGTCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGTCGGCTTTGTTGCGGACGTGTCCTGTATGTGATATGGTCATGACTGCTAGTGTACATGTTAACATGTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

294

Amino Acids

32.55

Weight (kDa)

5.56

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	243 - 284	1.6e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccII	CGCG	3 cut(s)	272, 409, 437
AciI	CCGC	6 cut(s)	108, 409, 425, 713, 741, 823
AclI	AACGTT	2 cut(s)	224, 368
AclWI	GGATC	3 cut(s)	149, 310, 814
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	4 cut(s)	149, 429, 796, 864
AflIII	ACRYGT	4 cut(s)	511, 827, 865, 873
AgsI	TTSAA	6 cut(s)	11, 172, 204, 222, 445, 656
AjiI	CACGTC	1 cut(s)	828
AluBI	AGCT	8 cut(s)	168, 190, 197, 451, 572, 662, 681, 690
AluI	AGCT	8 cut(s)	168, 190, 197, 451, 572, 662, 681, 690
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	3 cut(s)	149, 310, 814
ApoI	RAATTY	1 cut(s)	139
AseI	ATTAAT	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	143, 713, 755
BanII	GRGCYC	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
Bbv12I	GWGCWC	1 cut(s)	192
BceAI	ACGGC	2 cut(s)	726, 768
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	2 cut(s)	678, 858
BglII	AGATCT	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	828
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	3 cut(s)	257, 622, 658
BmuI	ACTGGG	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	529
BsaHI	GRCGYC	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	339
BseGI	GGATG	2 cut(s)	417, 734
BseMII	CTCAG	3 cut(s)	266, 345, 601
BseNI	ACTGG	1 cut(s)	500
Bsh1236I	CGCG	3 cut(s)	272, 409, 437
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	105, 119, 281
BsmAI	GTCTC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	862
Bsp143I	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
BspACI	CCGC	6 cut(s)	108, 409, 425, 713, 741, 823
BspCNI	CTCAG	3 cut(s)	265, 344, 600
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	3 cut(s)	272, 409, 437
BspHI	TCATGA	2 cut(s)	849, 881
BspPI	GGATC	3 cut(s)	149, 310, 814
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	862
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
BssNI	GRCGYC	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	147, 738, 799
Bst6I	CTCTTC	3 cut(s)	35, 40, 462
BstACI	GRCGYC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	862
BstBAI	YACGTR	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	106, 188
BstDEI	CTNAG	3 cut(s)	252, 331, 587
BstF5I	GGATG	2 cut(s)	417, 734
BstFNI	CGCG	3 cut(s)	272, 409, 437
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	6 cut(s)	136, 157, 318, 543, 593, 809
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 245, 668, 687
BstNSI	RCATGY	2 cut(s)	869, 877
BstSNI	TACGTA	1 cut(s)	529
BstUI	CGCG	3 cut(s)	272, 409, 437
BstX2I	RGATCY	3 cut(s)	154, 315, 540
BstYI	RGATCY	3 cut(s)	154, 315, 540
Bsu15I	ATCGAT	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	339
BtrI	CACGTC	1 cut(s)	828
BtsCI	GGATG	2 cut(s)	417, 734
Cac8I	GCNNGC	2 cut(s)	106, 188
CciI	TCATGA	2 cut(s)	849, 881
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	4 cut(s)	245, 273, 305, 408
Csp6I	GTAC	4 cut(s)	148, 428, 795, 863
CviAII	CATG	5 cut(s)	22, 850, 866, 874, 882
CviQI	GTAC	4 cut(s)	148, 428, 795, 863
DdeI	CTNAG	3 cut(s)	252, 331, 587
DpnI	GATC	6 cut(s)	135, 156, 317, 542, 592, 808
DpnII	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
Eam1104I	CTCTTC	3 cut(s)	35, 40, 462
EarI	CTCTTC	3 cut(s)	35, 40, 462
Ecl136II	GAGCTC	1 cut(s)	190
Eco105I	TACGTA	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
FaeI	CATG	5 cut(s)	25, 853, 869, 877, 885
FatI	CATG	5 cut(s)	21, 849, 865, 873, 881
FokI	GGATG	2 cut(s)	424, 741
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	678, 858
GlaI	GCGC	1 cut(s)	354
HapII	CCGG	3 cut(s)	105, 119, 281
HgaI	GACGC	4 cut(s)	245, 273, 305, 408
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	5 cut(s)	25, 853, 869, 877, 885
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	3 cut(s)	721, 750, 871
HindII	GTYRAC	3 cut(s)	721, 750, 871
HinfI	GANTC	8 cut(s)	25, 218, 230, 345, 375, 520, 535, 674
HpaI	GTTAAC	3 cut(s)	721, 750, 871
HpaII	CCGG	3 cut(s)	105, 119, 281
HphI	GGTGA	3 cut(s)	143, 713, 755
Hpy166II	GTNNAC	6 cut(s)	721, 734, 750, 795, 863, 871
Hpy188I	TCNGA	9 cut(s)	138, 159, 181, 213, 235, 255, 334, 540, 590
Hpy188III	TCNNGA	3 cut(s)	599, 850, 882
Hpy8I	GTNNAC	6 cut(s)	721, 734, 750, 795, 863, 871
Hpy99I	CGWCG	3 cut(s)	299, 645, 814
HpyCH4III	ACNGT	3 cut(s)	147, 738, 799
HpyCH4IV	ACGT	6 cut(s)	208, 224, 368, 511, 528, 827
HpyCH4V	TGCA	1 cut(s)	671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 245, 668, 687
HpyF3I	CTNAG	3 cut(s)	252, 331, 587
HpySE526I	ACGT	6 cut(s)	208, 224, 368, 511, 528, 827
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	5 cut(s)	25, 853, 869, 877, 885
HspAI	GCGC	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
KspAI	GTTAAC	3 cut(s)	721, 750, 871
Kzo9I	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
LpnPI	CCDG	6 cut(s)	118, 132, 294, 481, 529, 846
LweI	GCATC	3 cut(s)	257, 622, 658
MaeI	CTAG	2 cut(s)	678, 858
MaeII	ACGT	6 cut(s)	208, 224, 368, 511, 528, 827
MaeIII	GTNAC	3 cut(s)	121, 692, 706
MalI	GATC	6 cut(s)	135, 156, 317, 542, 592, 808
MboI	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
MboII	GAAGA	5 cut(s)	22, 27, 479, 529, 668
MflI	RGATCY	3 cut(s)	154, 315, 540
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	3 cut(s)	139, 380, 488
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	2 cut(s)	692, 719
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	8 cut(s)	66, 162, 242, 290, 491, 720, 749, 870
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	105, 119, 281
MvnI	CGCG	3 cut(s)	272, 409, 437
MwoI	GCNNNNNNNGC	4 cut(s)	11, 245, 668, 687
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	5 cut(s)	25, 853, 869, 877, 885
NmuCI	GTSAC	1 cut(s)	692
NspI	RCATGY	2 cut(s)	869, 877
PagI	TCATGA	2 cut(s)	849, 881
PciI	ACATGT	2 cut(s)	865, 873
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	8 cut(s)	25, 218, 230, 345, 375, 520, 535, 674
Ppu21I	YACGTR	1 cut(s)	529
PscI	ACATGT	2 cut(s)	865, 873
PshBI	ATTAAT	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	192
Psp1406I	AACGTT	2 cut(s)	224, 368
PsuI	RGATCY	3 cut(s)	154, 315, 540
RsaI	GTAC	4 cut(s)	149, 429, 796, 864
RsaNI	GTAC	4 cut(s)	148, 428, 795, 863
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	8 cut(s)	66, 162, 242, 290, 491, 720, 749, 870
Sau3AI	GATC	6 cut(s)	133, 154, 315, 540, 590, 806
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	3 cut(s)	257, 622, 658
SgrAI	CRCCGGYG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SnaBI	TACGTA	1 cut(s)	529
Sse9I	AATT	3 cut(s)	139, 380, 488
SsiI	CCGC	6 cut(s)	108, 409, 425, 713, 741, 823
SspMI	CTAG	2 cut(s)	678, 858
SstI	GAGCTC	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	147, 738, 799
TaiI	ACGT	6 cut(s)	211, 227, 371, 514, 531, 830
TaqI	TCGA	4 cut(s)	294, 339, 378, 600
TasI	AATT	3 cut(s)	139, 380, 488
TatI	WGTACW	2 cut(s)	147, 862
TfiI	GAWTC	8 cut(s)	25, 218, 230, 345, 375, 520, 535, 674
Tru1I	TTAA	8 cut(s)	66, 162, 242, 290, 491, 720, 749, 870
Tru9I	TTAA	8 cut(s)	66, 162, 242, 290, 491, 720, 749, 870
TseFI	GTSAC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	3 cut(s)	38, 98, 582
TspGWI	ACGGA	4 cut(s)	105, 377, 711, 738
VspI	ATTAAT	1 cut(s)	290
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	869, 877
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	2 cut(s)	678, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.