Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Reverse (-)

14324085 .. 14324531

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG154100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAGCAAGCTTAATTGGGTTCTTCAGGAAAGGGTGAAAAGCCTATTCGTTGAAAATCAGATATGGAGAGACTTGGCTCAATCAAACGAAGCCGCGGCCAATTCTCTGCGCTCCAATTTAGAGCAAGTCCTAGCGCACGTCAGCGAAGAAGGCCACCAGATGGGAAATTTTGCTGCTGCAGCTGCGCCCGAAGATGAGGCGGAGTCATGTTGCGGTAGCAACGATTGCGGGCATGAAAACGAAGCTGATGGGGGGTTAGTTGGTTGCACCGACACGGTGGTTGGCGGTGGCGATAGGATGTGCAAGAGGTGTGGCGTGAGAGAGTCAAAGGTGTTATTGTTGCCATGCAGGCATCTTTGCCTTTGTACAATGTGTGGGTCCACCCTTCAGAATTGTCCAGTATGTGATTCTGTCATGAATGCCAGCGTGCATGTTAATTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

148

Amino Acids

15.92

Weight (kDa)

4.99

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	98 - 139	1.3e-10	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccII	CGCG	1 cut(s)	95
AciI	CCGC	6 cut(s)	93, 95, 200, 213, 228, 285
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	166
AcuI	CTGAAG	2 cut(s)	8, 371
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	10, 182, 245
AluI	AGCT	3 cut(s)	10, 182, 245
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	96, 151
ApeKI	GCWGC	4 cut(s)	173, 176, 179, 182
ApoI	RAATTY	1 cut(s)	166
AspLEI	GCGC	3 cut(s)	111, 136, 187
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	378
BbvI	GCAGC	4 cut(s)	160, 163, 169, 191
BccI	CCATC	2 cut(s)	154, 242
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	6 cut(s)	93, 96, 174, 177, 180, 183
BlsI	GCNGC	6 cut(s)	94, 97, 175, 178, 181, 184
Bme18I	GGWCC	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	379
BmsI	GCATC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	160, 163, 169, 191
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	98, 153
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	2 cut(s)	98, 153
Bsp1407I	TGTACA	1 cut(s)	365
BspACI	CCGC	6 cut(s)	93, 95, 200, 213, 228, 285
BspANI	GGCC	2 cut(s)	98, 153
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	365
BstC8I	GCNNGC	5 cut(s)	8, 230, 350, 424, 428
BstDEI	CTNAG	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	111, 136, 187
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 179, 182, 225, 349
BstNSI	RCATGY	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	160, 163, 169, 191
BsuRI	GGCC	2 cut(s)	98, 153
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	5 cut(s)	8, 230, 350, 424, 428
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	3 cut(s)	111, 136, 187
Cfr13I	GGNCC	1 cut(s)	378
Cfr42I	CCGCGG	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	5 cut(s)	207, 233, 345, 415, 431
CviJI	RGCY	8 cut(s)	10, 42, 77, 92, 98, 153, 182, 245
CviKI_1	RGCY	8 cut(s)	10, 42, 77, 92, 98, 153, 182, 245
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	8, 371
FaeI	CATG	5 cut(s)	210, 236, 348, 418, 434
FaiI	YATR	7 cut(s)	64, 208, 234, 346, 403, 416, 432
FatI	CATG	5 cut(s)	206, 232, 344, 414, 430
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	6 cut(s)	93, 96, 174, 177, 180, 183
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	6 cut(s)	93, 96, 174, 177, 180, 183
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	3 cut(s)	110, 135, 186
GluI	GCNGC	6 cut(s)	93, 96, 174, 177, 180, 183
HaeIII	GGCC	2 cut(s)	98, 153
HhaI	GCGC	3 cut(s)	111, 136, 187
Hin1II	CATG	5 cut(s)	210, 236, 348, 418, 434
Hin6I	GCGC	3 cut(s)	109, 134, 185
HinP1I	GCGC	3 cut(s)	109, 134, 185
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	203, 323, 407
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	2 cut(s)	60, 390
Hpy188III	TCNNGA	2 cut(s)	26, 415
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	2 cut(s)	143, 395
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	179, 267, 303, 348, 430
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 179, 182, 225, 349
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	210, 236, 348, 418, 434
HspAI	GCGC	3 cut(s)	109, 134, 185
KspI	CCGCGG	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	11, 170, 334, 411, 436
Lsp1109I	GCAGC	4 cut(s)	160, 163, 169, 191
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	138
MboII	GAAGA	3 cut(s)	14, 158, 203
MluCI	AATT	6 cut(s)	13, 100, 115, 166, 391, 436
MlyI	GAGTC	2 cut(s)	212, 332
MnlI	CCTC	2 cut(s)	190, 300
MseI	TTAA	2 cut(s)	12, 435
MspA1I	CMGCKG	2 cut(s)	95, 182
Mva1269I	GAATGC	1 cut(s)	424
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	5 cut(s)	150, 179, 182, 225, 349
NlaIII	CATG	5 cut(s)	210, 236, 348, 418, 434
NlaIV	GGNNCC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	434
PagI	TCATGA	1 cut(s)	414
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	6 cut(s)	94, 97, 175, 178, 181, 184
PleI	GAGTC	2 cut(s)	211, 331
PpsI	GAGTC	2 cut(s)	211, 331
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacII	CCGCGG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	12, 435
SatI	GCNGC	6 cut(s)	93, 96, 174, 177, 180, 183
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	212, 332
SetI	ASST	6 cut(s)	12, 141, 184, 247, 311, 333
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	378
Sse9I	AATT	6 cut(s)	13, 100, 115, 166, 391, 436
SsiI	CCGC	6 cut(s)	93, 95, 200, 213, 228, 285
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	141
TasI	AATT	6 cut(s)	13, 100, 115, 166, 391, 436
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	2 cut(s)	95, 98
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	12, 435
Tru9I	TTAA	2 cut(s)	12, 435
TseI	GCWGC	4 cut(s)	173, 176, 179, 182
TspDTI	ATGAA	2 cut(s)	249, 431
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	166
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.