Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Reverse (-)

14324765 .. 14325396

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGGTTGAAGCTCAGCATCACCACCACTCTGTTTTTGTTCCATCTCAGTTGATGGCGAATAGAGATTTCATTAAGGCTAATCAAGCAAACGGCAATATGTACAATAGCCAGATGGATTCCGGTATGCTTTTGGCGGCAGCAACAATGCCGGAAAATAATCATATGCCGTTGTATCAGTCGGCTATCTGTGATCAAGCTAAGACATCGATGAACCAAGCGGAAAGCGGTCTCACGTACAACAACATCATATCTGCTCCGAGAAAGCGGTCGAGAGACTCGTTAATGAATGAGTTTAACAATTTTACGGTTCCTCAGCCAAAGAAACTCTCGTCCGGTCTTTCATCATCGTTTCTCGACCAAGACATTGCCTTTCAGATCCAACAGCAGCAGTCGGAGATTGATCGATTCATTGCCCAACACGTAAGTTTTAAGTCCCTGCCATTTCTAATATGTTATTCCTCTGTTTTAGGCGTGCTGGTATTGAAAAATTCACTGTTTTGTTTTCGTTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

172

Amino Acids

19.31

Weight (kDa)

7.78

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 137, 221, 228, 268
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	490
AfaI	GTAC	2 cut(s)	104, 239
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	11, 487
AluBI	AGCT	2 cut(s)	14, 200
AluI	AGCT	2 cut(s)	14, 200
Alw26I	GTCTC	2 cut(s)	236, 270
AlwI	GGATC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	140, 388
ApoI	RAATTY	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	152, 400
BccI	CCATC	3 cut(s)	49, 52, 109
BceAI	ACGGC	2 cut(s)	109, 154
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	236, 270
BisI	GCNGC	3 cut(s)	138, 141, 389
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	139, 142, 390
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	15
Bsa29I	ATCGAT	2 cut(s)	209, 406
BsaAI	YACGTR	2 cut(s)	237, 424
BsaI	GGTCTC	1 cut(s)	236
BsaWI	WCCGGW	2 cut(s)	122, 335
Bse3DI	GCAATG	2 cut(s)	366, 411
BseCI	ATCGAT	2 cut(s)	209, 406
BseMI	GCAATG	2 cut(s)	366, 411
BseMII	CTCAG	3 cut(s)	29, 62, 329
BseXI	GCAGC	2 cut(s)	152, 400
Bsh1285I	CGRYCG	1 cut(s)	272
BshVI	ATCGAT	2 cut(s)	209, 406
BsiEI	CGRYCG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	123, 152, 336
BslFI	GGGAC	1 cut(s)	421
BsmAI	GTCTC	2 cut(s)	236, 270
BsmFI	GGGAC	1 cut(s)	421
Bso31I	GGTCTC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	193, 378, 403
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	5, 137, 221, 228, 268
BspCNI	CTCAG	3 cut(s)	28, 61, 328
BspDI	ATCGAT	2 cut(s)	209, 406
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	366, 411
BsrGI	TGTACA	1 cut(s)	102
BssMI	GATC	3 cut(s)	193, 378, 403
Bst4CI	ACNGT	2 cut(s)	310, 498
BstAUI	TGTACA	1 cut(s)	102
BstBAI	YACGTR	2 cut(s)	237, 424
BstC8I	GCNNGC	1 cut(s)	476
BstDEI	CTNAG	4 cut(s)	15, 48, 201, 315
BstKTI	GATC	3 cut(s)	196, 381, 406
BstMAI	GTCTC	2 cut(s)	236, 270
BstMBI	GATC	3 cut(s)	193, 378, 403
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 86
BstV1I	GCAGC	2 cut(s)	152, 400
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	2 cut(s)	209, 406
BsuTUI	ATCGAT	2 cut(s)	209, 406
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	476
ClaI	ATCGAT	2 cut(s)	209, 406
Csp6I	GTAC	2 cut(s)	103, 238
CviJI	RGCY	6 cut(s)	14, 80, 111, 185, 200, 319
CviKI_1	RGCY	6 cut(s)	14, 80, 111, 185, 200, 319
CviQI	GTAC	2 cut(s)	103, 238
DdeI	CTNAG	4 cut(s)	15, 48, 201, 315
DpnI	GATC	3 cut(s)	195, 380, 405
DpnII	GATC	3 cut(s)	193, 378, 403
Eco31I	GGTCTC	1 cut(s)	236
FaiI	YATR	6 cut(s)	101, 128, 165, 167, 251, 454
FaqI	GGGAC	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	138, 141, 389
Fsp4HI	GCNGC	3 cut(s)	138, 141, 389
GluI	GCNGC	3 cut(s)	138, 141, 389
HapII	CCGG	3 cut(s)	123, 152, 336
HinfI	GANTC	3 cut(s)	119, 278, 408
HpaII	CCGG	3 cut(s)	123, 152, 336
HphI	GGTGA	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	261, 378, 397
Hpy188III	TCNNGA	2 cut(s)	273, 356
HpyCH4III	ACNGT	2 cut(s)	310, 498
HpyCH4IV	ACGT	2 cut(s)	236, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 86
HpyF3I	CTNAG	4 cut(s)	15, 48, 201, 315
HpySE526I	ACGT	2 cut(s)	236, 423
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	193, 378, 403
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	6 cut(s)	125, 136, 165, 349, 452, 464
Lsp1109I	GCAGC	2 cut(s)	152, 400
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	2 cut(s)	236, 423
MalI	GATC	3 cut(s)	195, 380, 405
MboI	GATC	3 cut(s)	193, 378, 403
MflI	RGATCY	1 cut(s)	378
MluCI	AATT	2 cut(s)	301, 490
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	375, 406
MnlI	CCTC	2 cut(s)	324, 472
MseI	TTAA	4 cut(s)	75, 284, 297, 432
MspI	CCGG	3 cut(s)	123, 152, 336
MwoI	GCNNNNNNNGC	2 cut(s)	11, 86
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	3 cut(s)	193, 378, 403
NlaIV	GGNNCC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	119, 408
PkrI	GCNGC	3 cut(s)	139, 142, 390
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	2 cut(s)	237, 424
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	2 cut(s)	104, 239
RsaNI	GTAC	2 cut(s)	103, 238
SaqAI	TTAA	4 cut(s)	75, 284, 297, 432
SatI	GCNGC	3 cut(s)	138, 141, 389
Sau3AI	GATC	3 cut(s)	193, 378, 403
SchI	GAGTC	1 cut(s)	272
SetI	ASST	4 cut(s)	16, 202, 239, 426
SfaNI	GCATC	1 cut(s)	28
Sse9I	AATT	2 cut(s)	301, 490
SsiI	CCGC	5 cut(s)	5, 137, 221, 228, 268
TaaI	ACNGT	2 cut(s)	310, 498
TaiI	ACGT	2 cut(s)	239, 426
TaqI	TCGA	4 cut(s)	209, 272, 357, 406
TasI	AATT	2 cut(s)	301, 490
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	119, 408
Tru1I	TTAA	4 cut(s)	75, 284, 297, 432
Tru9I	TTAA	4 cut(s)	75, 284, 297, 432
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	140, 388
TspDTI	ATGAA	5 cut(s)	61, 227, 302, 333, 400
TspRI	CASTG	1 cut(s)	501
XapI	RAATTY	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.