Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009010

Physical Location & Seq

Genomic Coordinates Forward (+)

22755305 .. 22756760

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTGGGACACTCCCTCGTGGGCCCCACTCCCTCCCCCTAATCCCATAATAGAAGTCACGTACTCAACGAGCGCTGCCTCCAATTTCGGGAAAAGTCCTCTCGGACTGTACCTTGTTGCTGACGTGGGGGACCTCTGCGGAGGGCACCAACGCATCGGATACGTGGCGGGGGTTGCCATCAACCGCAGAAAATCACAGGCCCTCCATTTTCTTTGCTGGCACTTTCCTAAAATTCCGTTAAAGTCCCTGGAAGTTTGGTCCAATTACGGAAAAAATCCCAGGACGAAATCCCCAAGAGTGAATGGGGAGGTTACTGTGTGGATTTTCTTTTTTCTTGTTGGAACACCTTTAACTTTTGCTCCTCTCTTTCTCTCTCCTCTCTCTCTGCCTAATAAATTAGATGCAAGCTCTCCAGTCGCCACCTCTATTGCGTGCTATCTCCCTTCATCGCATCCTCGTTCTCTTCAAAAGCTCTCTCGTTTTATTTCTCTCCTACCTTCTTCCTCTCACAAGAAAAACTACACCACGAGTCTACTCCGTGTTTCCATGGCAGTTGAAGCTCAGCACCACCACCATGCAGTTCTAATCCCATCGCAACTAATCCCCAACAGAGATTTCATCAAAACGAACCTAGGAAATCCAAATTTCTACAGTACCCAGATGGATTCCGGCCTTCTTTTGTCGACAACAATGCCGGAAAATCTCCTTCCGATGTATCAGTCTCCTTTCTGTGATGCAAATAAGGCTTCCATGAACAAGGACGCGACAGACAGTGGCCTCACATACAACAACATCTCCGCTCCTCGGAAGCGGCCGAGAGACCAATTAAGCAATGACTTCAACAATTTCTCGGCCCCTCACAAGAACAAAATCTCCTCTTTTTTCGACCAAGACATTGCTTTTCAGATCCAACAACAGCAATCTGATCGATCGACCGGTTCATTGCCCAACATTCGGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009739 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0030162 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

322

Amino Acids

35.74

Weight (kDa)

9.67

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19700 AT5G45100 AT5G45100
fragaria_vesca	FvH4_3g12030 FvH4_3g12030
malus_domestica	MD05G1255400.v1.1 MD10G1235500.v1.1
prunus_persica	Prupe.4G108500_v2.0.a1
pyrus_communis	pycom05g23380 pycom10g19700 pycom10g19710
rosa_chinensis	RchiOBHm_Chr5g0019721
rosa_laevigata	RLG00000032464
rosa_multiflora	Rmu_ssc0000062.1_g000019
rosa_roxburghii	Rroxscaffold_1G00058390
rosa_rugosa	Rorug05G0053500
rosa_samantha	Rh5AG143800 Rh5BG142700 Rh5CG154100 Rh5CG154200 Rh5DG142800
rosa_wichuraiana	Rw5G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	800
AccI	GTMKAC	2 cut(s)	532, 683
AccII	CGCG	1 cut(s)	764
AciI	CCGC	5 cut(s)	138, 167, 184, 798, 811
AclWI	GGATC	1 cut(s)	901
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	2 cut(s)	231, 643
AfaI	GTAC	3 cut(s)	62, 110, 655
AfeI	AGCGCT	1 cut(s)	73
AfiI	CCNNNNNNNGG	3 cut(s)	87, 804, 954
AgeI	ACCGGT	1 cut(s)	935
AgsI	TTSAA	3 cut(s)	467, 557, 841
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	246, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AloI	GAACNNNNNNTCC	2 cut(s)	857, 889
AluBI	AGCT	3 cut(s)	408, 472, 560
AluI	AGCT	3 cut(s)	408, 472, 560
Alw26I	GTCTC	2 cut(s)	726, 813
AlwI	GGATC	1 cut(s)	901
Aor51HI	AGCGCT	1 cut(s)	73
AoxI	GGCC	6 cut(s)	21, 198, 670, 775, 812, 852
ApaI	GGGCCC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	231, 643
AsiGI	ACCGGT	1 cut(s)	935
AspA2I	CCTAGG	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	6 cut(s)	21, 22, 130, 199, 258, 853
AvaII	GGWCC	2 cut(s)	130, 258
AvrII	CCTAGG	1 cut(s)	631
BaeGI	GKGCMC	2 cut(s)	25, 147
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	25
BauI	CACGAG	2 cut(s)	16, 526
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	185, 598, 655
BcgI	CGANNNNNNTGC	4 cut(s)	673, 707, 908, 942
BciT130I	CCWGG	2 cut(s)	248, 280
BciVI	GTATCC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	726, 813
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	75, 812
BlnI	CCTAGG	1 cut(s)	631
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	2 cut(s)	76, 813
Bme1390I	CCNGG	2 cut(s)	248, 280
Bme18I	GGWCC	2 cut(s)	130, 258
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	6 cut(s)	21, 22, 130, 199, 258, 853
BmiI	GGNNCC	5 cut(s)	23, 24, 131, 146, 855
BmrFI	CCNGG	2 cut(s)	248, 280
BmsI	GCATC	4 cut(s)	162, 391, 460, 724
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	928
BsaAI	YACGTR	2 cut(s)	60, 163
BsaI	GGTCTC	1 cut(s)	813
BsaJI	CCNNGG	5 cut(s)	246, 278, 546, 631, 803
BsaWI	WCCGGW	1 cut(s)	935
BsaXI	ACNNNNNCTCC	8 cut(s)	186, 216, 343, 373, 779, 809, 857, 887
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 804, 954
Bse118I	RCCGGY	1 cut(s)	935
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	3 cut(s)	838, 894, 941
BseBI	CCWGG	2 cut(s)	248, 280
BseCI	ATCGAT	1 cut(s)	928
BseDI	CCNNGG	5 cut(s)	246, 278, 546, 631, 803
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	87, 804, 954
BseMI	GCAATG	3 cut(s)	838, 894, 941
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	4 cut(s)	351, 366, 792, 865
BseSI	GKGCMC	2 cut(s)	25, 147
BseX3I	CGGCCG	1 cut(s)	812
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	764
Bsh1285I	CGRYCG	3 cut(s)	815, 932, 936
BshFI	GGCC	6 cut(s)	23, 200, 672, 777, 814, 854
BshNI	GGYRCC	1 cut(s)	144
BshTI	ACCGGT	1 cut(s)	935
BshVI	ATCGAT	1 cut(s)	928
BsiEI	CGRYCG	3 cut(s)	815, 932, 936
BsiSI	CCGG	3 cut(s)	669, 695, 936
BslFI	GGGAC	3 cut(s)	20, 143, 229
BslI	CCNNNNNNNGG	3 cut(s)	87, 804, 954
BsmAI	GTCTC	2 cut(s)	726, 813
BsmFI	GGGAC	3 cut(s)	20, 143, 229
BsnI	GGCC	6 cut(s)	23, 200, 672, 777, 814, 854
Bso31I	GGTCTC	1 cut(s)	813
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	2 cut(s)	25, 147
Bsp143I	GATC	3 cut(s)	906, 925, 929
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	5 cut(s)	138, 167, 184, 798, 811
BspANI	GGCC	6 cut(s)	23, 200, 672, 777, 814, 854
BspCNI	CTCAG	1 cut(s)	574
BspDI	ATCGAT	1 cut(s)	928
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	5 cut(s)	23, 24, 131, 146, 855
BspPI	GGATC	1 cut(s)	901
BspT107I	GGYRCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	813
BsrBI	CCGCTC	1 cut(s)	800
BsrDI	GCAATG	3 cut(s)	838, 894, 941
BsrFI	RCCGGY	1 cut(s)	935
BsrI	ACTGG	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	935
BssECI	CCNNGG	5 cut(s)	246, 278, 546, 631, 803
BssMI	GATC	3 cut(s)	906, 925, 929
BssSI	CACGAG	2 cut(s)	16, 526
BssT1I	CCWWGG	2 cut(s)	546, 631
Bst2BI	CACGAG	2 cut(s)	16, 526
Bst2UI	CCWGG	2 cut(s)	248, 280
Bst4CI	ACNGT	4 cut(s)	108, 316, 653, 773
Bst6I	CTCTTC	1 cut(s)	468
BstBAI	YACGTR	2 cut(s)	60, 163
BstC8I	GCNNGC	3 cut(s)	218, 406, 433
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	764
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	909, 928, 932
BstMAI	GTCTC	2 cut(s)	726, 813
BstMBI	GATC	3 cut(s)	906, 925, 929
BstMCI	CGRYCG	3 cut(s)	815, 932, 936
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 557, 743
BstNI	CCWGG	2 cut(s)	248, 280
BstSCI	CCNGG	2 cut(s)	246, 278
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	2 cut(s)	25, 147
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
BstZI	CGGCCG	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	928
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	6 cut(s)	23, 200, 672, 777, 814, 854
BsuTUI	ATCGAT	1 cut(s)	928
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	2 cut(s)	432, 576
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	3 cut(s)	218, 406, 433
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	935
Cfr13I	GGNCC	6 cut(s)	21, 22, 130, 199, 258, 853
ClaI	ATCGAT	1 cut(s)	928
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	3 cut(s)	61, 109, 654
CspAI	ACCGGT	1 cut(s)	935
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	3 cut(s)	547, 575, 751
CviQI	GTAC	3 cut(s)	61, 109, 654
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	908, 927, 931
DpnII	GATC	3 cut(s)	906, 925, 929
EaeI	YGGCCR	1 cut(s)	812
EagI	CGGCCG	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EclXI	CGGCCG	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	546, 631
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	813
Eco47I	GGWCC	2 cut(s)	130, 258
Eco47III	AGCGCT	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	812
EcoO109I	RGGNCCY	3 cut(s)	22, 130, 199
EcoRII	CCWGG	2 cut(s)	246, 278
EcoT14I	CCWWGG	2 cut(s)	546, 631
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	546, 631
FaeI	CATG	3 cut(s)	550, 578, 754
FaiI	YATR	5 cut(s)	47, 548, 576, 752, 784
FaqI	GGGAC	3 cut(s)	20, 143, 229
FatI	CATG	3 cut(s)	546, 574, 750
FauI	CCCGC	1 cut(s)	160
FblI	GTMKAC	2 cut(s)	532, 683
Fnu4HI	GCNGC	2 cut(s)	75, 812
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	75, 812
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	75, 812
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	6 cut(s)	23, 200, 672, 777, 814, 854
HapII	CCGG	3 cut(s)	669, 695, 936
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	550, 578, 754
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	2 cut(s)	529, 665
HpaII	CCGG	3 cut(s)	669, 695, 936
Hpy166II	GTNNAC	2 cut(s)	533, 684
Hpy188I	TCNGA	7 cut(s)	104, 158, 711, 807, 906, 925, 957
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	533, 684
HpyAV	CCTTC	4 cut(s)	453, 507, 683, 716
HpyCH4III	ACNGT	4 cut(s)	108, 316, 653, 773
HpyCH4IV	ACGT	3 cut(s)	59, 123, 162
HpyCH4V	TGCA	3 cut(s)	404, 578, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 557, 743
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	3 cut(s)	59, 123, 162
Hsp92II	CATG	3 cut(s)	550, 578, 754
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	906, 925, 929
LmnI	GCTCC	2 cut(s)	364, 805
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	4 cut(s)	162, 391, 460, 724
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	3 cut(s)	59, 123, 162
MaeIII	GTNAC	2 cut(s)	55, 310
MalI	GATC	3 cut(s)	908, 927, 931
MbiI	CCGCTC	1 cut(s)	800
MboI	GATC	3 cut(s)	906, 925, 929
MboII	GAAGA	2 cut(s)	455, 492
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	2 cut(s)	25, 147
MluCI	AATT	7 cut(s)	82, 231, 262, 395, 643, 824, 844
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	2 cut(s)	319, 934
MseI	TTAA	3 cut(s)	239, 350, 827
MslI	CAYNNNNRTG	1 cut(s)	573
MspI	CCGG	3 cut(s)	669, 695, 936
MspR9I	CCNGG	2 cut(s)	248, 280
MvaI	CCWGG	2 cut(s)	248, 280
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	3 cut(s)	173, 557, 743
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	3 cut(s)	906, 925, 929
NlaIII	CATG	3 cut(s)	550, 578, 754
NlaIV	GGNNCC	5 cut(s)	23, 24, 131, 146, 855
NmeAIII	GCCGAG	2 cut(s)	830, 840
NmuCI	GTSAC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	665
PinAI	ACCGGT	1 cut(s)	935
PkrI	GCNGC	2 cut(s)	76, 813
Ple19I	CGATCG	1 cut(s)	932
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
Ppu21I	YACGTR	2 cut(s)	60, 163
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	246, 278
PspGI	CCWGG	2 cut(s)	246, 278
PspN4I	GGNNCC	5 cut(s)	23, 24, 131, 146, 855
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	6 cut(s)	21, 22, 130, 199, 258, 853
PspPPI	RGGWCCY	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	906
PvuI	CGATCG	1 cut(s)	932
RsaI	GTAC	3 cut(s)	62, 110, 655
RsaNI	GTAC	3 cut(s)	61, 109, 654
RseI	CAYNNNNRTG	1 cut(s)	573
SalI	GTCGAC	1 cut(s)	682
SaqAI	TTAA	3 cut(s)	239, 350, 827
SatI	GCNGC	2 cut(s)	75, 812
Sau3AI	GATC	3 cut(s)	906, 925, 929
Sau96I	GGNCC	6 cut(s)	21, 22, 130, 199, 258, 853
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	248, 280
SduI	GDGCHC	2 cut(s)	25, 147
SfaNI	GCATC	4 cut(s)	162, 391, 460, 724
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	2 cut(s)	130, 258
SmiMI	CAYNNNNRTG	1 cut(s)	573
Sse9I	AATT	7 cut(s)	82, 231, 262, 395, 643, 824, 844
SsiI	CCGC	5 cut(s)	138, 167, 184, 798, 811
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	246, 278
StyI	CCWWGG	2 cut(s)	546, 631
TaaI	ACNGT	4 cut(s)	108, 316, 653, 773
TaiI	ACGT	3 cut(s)	62, 126, 165
TaqI	TCGA	4 cut(s)	683, 885, 928, 932
TasI	AATT	7 cut(s)	82, 231, 262, 395, 643, 824, 844
TauI	GCSGC	1 cut(s)	814
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	239, 350, 827
Tru9I	TTAA	3 cut(s)	239, 350, 827
TscAI	CASTG	1 cut(s)	778
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	435, 607, 767, 930
TspGWI	ACGGA	3 cut(s)	225, 282, 527
TspRI	CASTG	1 cut(s)	778
VpaK11BI	GGWCC	2 cut(s)	130, 258
XapI	RAATTY	2 cut(s)	231, 643
XmaJI	CCTAGG	1 cut(s)	631
XmiI	GTMKAC	2 cut(s)	532, 683
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.